RNA–Protein interactions for RNA: ENST00000477288.5

VARS2-209, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2

Gene VARS2, Length 6,054 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-209ENST00000477288 DCAF8L2P0C7V8 631 aa32.37■■■□□ 2.77
VARS2-209ENST00000477288 NISCHQ9Y2I1 1504 aa30.63■■■□□ 2.49
VARS2-209ENST00000477288 SUPT5HO00267 1087 aaKnown RBP30.33■■■□□ 2.45
VARS2-209ENST00000477288 EHMT2Q96KQ7 1210 aa29.9■■■□□ 2.38
VARS2-209ENST00000477288 SHROOM4Q9ULL8 1493 aa29.67■■■□□ 2.34
VARS2-209ENST00000477288 PELP1Q8IZL8 1130 aaKnown RBP29.64■■■□□ 2.34
VARS2-209ENST00000477288 APLP2Q06481 763 aa29.28■■■□□ 2.28
VARS2-209ENST00000477288 FAM9AQ8IZU1 332 aaPredicted RBP29.01■■■□□ 2.24
VARS2-209ENST00000477288 TTBK1Q5TCY1 1321 aaPredicted RBP28.87■■■□□ 2.21
VARS2-209ENST00000477288 ERICH6Q7L0X2 663 aa28.68■■■□□ 2.18
VARS2-209ENST00000477288 RANGAP1P46060 587 aaPredicted RBP28.61■■■□□ 2.17
VARS2-209ENST00000477288 ATP1B4Q9UN42 357 aaPredicted RBP28.45■■■□□ 2.15
VARS2-209ENST00000477288 PCGF6Q9BYE7 350 aa28.42■■■□□ 2.14
VARS2-209ENST00000477288 CCER1Q8TC90 406 aaPredicted RBP28.35■■■□□ 2.13
VARS2-209ENST00000477288 CENPBP07199 599 aaPredicted RBP28.18■■■□□ 2.1
VARS2-209ENST00000477288 TRIM41Q8WV44 630 aa27.99■■■□□ 2.07
VARS2-209ENST00000477288 UBTFP17480 764 aaKnown RBP27.93■■■□□ 2.06
VARS2-209ENST00000477288 NEFLP07196 543 aa27.87■■■□□ 2.05
VARS2-209ENST00000477288 YTHDC1Q96MU7 727 aaKnown RBP27.83■■■□□ 2.05
VARS2-209ENST00000477288 ZEB1P37275 1124 aaPredicted RBP27.77■■■□□ 2.04
VARS2-209ENST00000477288 MYT1LQ9UL68 1186 aa27.61■■■□□ 2.01
VARS2-209ENST00000477288 MYT1Q01538 1121 aa27.47■■□□□ 1.99
VARS2-209ENST00000477288 PPARGC1BQ86YN6 1023 aaKnown RBP27.43■■□□□ 1.98
VARS2-209ENST00000477288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.4■■□□□ 1.98
VARS2-209ENST00000477288 HNRNPUL2Q1KMD3 747 aaKnown RBP27.4■■□□□ 1.98
VARS2-209ENST00000477288 DAXXQ9UER7 740 aaPredicted RBP27.37■■□□□ 1.97
VARS2-209ENST00000477288 POLR3GLQ9BT43 218 aa27.37■■□□□ 1.97
VARS2-209ENST00000477288 ITGAEP38570 1179 aa27.24■■□□□ 1.95
VARS2-209ENST00000477288 CHIC1Q5VXU3 224 aa27.19■■□□□ 1.94
VARS2-209ENST00000477288 CNGB1Q14028 1251 aaPredicted RBP27.17■■□□□ 1.94
VARS2-209ENST00000477288 SLC4A1APQ9BWU0 796 aaKnown RBP27■■□□□ 1.91
VARS2-209ENST00000477288 TRIM26Q12899 539 aaPredicted RBP26.8■■□□□ 1.88
VARS2-209ENST00000477288 CLSPNQ9HAW4 1339 aa26.72■■□□□ 1.87
VARS2-209ENST00000477288 ZNF316A6NFI3 1004 aaPredicted RBP26.7■■□□□ 1.86
VARS2-209ENST00000477288 HRCP23327 699 aa26.6■■□□□ 1.85
VARS2-209ENST00000477288 RTL5Q5HYW3 569 aaPredicted RBP26.56■■□□□ 1.84
VARS2-209ENST00000477288 LOC105371045A0A1W2PR82 267 aa26.51■■□□□ 1.83
VARS2-209ENST00000477288 FAM50AQ14320 339 aaKnown RBP26.43■■□□□ 1.82
VARS2-209ENST00000477288 TRIM52Q96A61 297 aa26.4■■□□□ 1.82
VARS2-209ENST00000477288 ABCC9O60706 1549 aa26.3■■□□□ 1.8
VARS2-209ENST00000477288 NEUROD1Q13562 356 aa26.21■■□□□ 1.79
VARS2-209ENST00000477288 BCL11AQ9H165 835 aa26.21■■□□□ 1.79
VARS2-209ENST00000477288 ZNF326Q5BKZ1 582 aaKnown RBP26.19■■□□□ 1.78
VARS2-209ENST00000477288 SLC24A1O60721 1099 aa26.18■■□□□ 1.78
VARS2-209ENST00000477288 ZBTB47Q9UFB7 747 aaPredicted RBP26.17■■□□□ 1.78
VARS2-209ENST00000477288 FBLN2P98095 1184 aa26.16■■□□□ 1.78
VARS2-209ENST00000477288 BCANQ96GW7 911 aa26.14■■□□□ 1.78
VARS2-209ENST00000477288 PABPN1Q86U42 306 aaKnown RBP eCLIP26.14■■□□□ 1.772e-7■■■■□ 25.2
VARS2-209ENST00000477288 DIEXFQ68CQ4 756 aaKnown RBP26.13■■□□□ 1.77
VARS2-209ENST00000477288 CANXP27824 592 aaKnown RBP25.94■■□□□ 1.74
VARS2-209ENST00000477288 ANP32CO43423 234 aa25.86■■□□□ 1.73
VARS2-209ENST00000477288 CDK11AQ9UQ88 783 aaPredicted RBP25.86■■□□□ 1.73
VARS2-209ENST00000477288 ARID3CA6NKF2 412 aa25.85■■□□□ 1.73
VARS2-209ENST00000477288 NEFMP07197 916 aa25.84■■□□□ 1.73
VARS2-209ENST00000477288 P3H3Q8IVL6 736 aa25.71■■□□□ 1.71
VARS2-209ENST00000477288 GTF3C3Q9Y5Q9 886 aa25.68■■□□□ 1.7
VARS2-209ENST00000477288 ZNF777Q9ULD5 760 aaPredicted RBP25.68■■□□□ 1.7
VARS2-209ENST00000477288 PLPPR3Q6T4P5 718 aa25.65■■□□□ 1.7
VARS2-209ENST00000477288 ESF1Q9H501 851 aaKnown RBP25.64■■□□□ 1.7
VARS2-209ENST00000477288 NPM2Q86SE8 214 aaKnown RBP25.57■■□□□ 1.68
VARS2-209ENST00000477288 STAG3Q9UJ98 1225 aa25.51■■□□□ 1.67
VARS2-209ENST00000477288 CHGAP10645 457 aaKnown RBP25.5■■□□□ 1.67
VARS2-209ENST00000477288 ANP32AP39687 249 aaKnown RBP25.49■■□□□ 1.67
VARS2-209ENST00000477288 HSP90AA1P07900 732 aaKnown RBP25.37■■□□□ 1.65
VARS2-209ENST00000477288 ZCCHC6Q5VYS8 1495 aaKnown RBP25.35■■□□□ 1.65
VARS2-209ENST00000477288 ANP32BQ92688 251 aaKnown RBP25.35■■□□□ 1.65
VARS2-209ENST00000477288 EIF5BO60841 1220 aaKnown RBP25.31■■□□□ 1.64
VARS2-209ENST00000477288 CSRNP3Q8WYN3 585 aa25.3■■□□□ 1.64
VARS2-209ENST00000477288 NPM1P06748 294 aaKnown RBP eCLIP25.29■■□□□ 1.64
VARS2-209ENST00000477288 SCRIBQ14160 1630 aa25.26■■□□□ 1.63
VARS2-209ENST00000477288 SCAF1Q9H7N4 1312 aaKnown RBP25.17■■□□□ 1.62
VARS2-209ENST00000477288 UPF2Q9HAU5 1272 aaKnown RBP25.15■■□□□ 1.62
VARS2-209ENST00000477288 SALL2Q9Y467 1007 aaPredicted RBP25.15■■□□□ 1.62
VARS2-209ENST00000477288 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.13■■□□□ 1.611e-7■■□□□ 12.9
VARS2-209ENST00000477288 A0A0G2JS52 829 aa25.1■■□□□ 1.61
VARS2-209ENST00000477288 FKBP8Q14318 412 aa25.1■■□□□ 1.61
VARS2-209ENST00000477288 TONSLQ96HA7 1378 aa25.1■■□□□ 1.61
VARS2-209ENST00000477288 CCDC180Q9P1Z9 1646 aa25.07■■□□□ 1.6
VARS2-209ENST00000477288 ARXQ96QS3 562 aa25.06■■□□□ 1.6
VARS2-209ENST00000477288 FAM9BQ8IZU0 186 aa25.05■■□□□ 1.6
VARS2-209ENST00000477288 ACIN1Q9UKV3 1341 aaKnown RBP25.03■■□□□ 1.6
VARS2-209ENST00000477288 HNRNPUQ00839 825 aaKnown RBP eCLIP25■■□□□ 1.59
VARS2-209ENST00000477288 CHIC2Q9UKJ5 165 aa24.99■■□□□ 1.59
VARS2-209ENST00000477288 PLEKHG5O94827 1062 aa24.97■■□□□ 1.59
VARS2-209ENST00000477288 ZBTB7CA1YPR0 619 aa24.96■■□□□ 1.59
VARS2-209ENST00000477288 SENP3Q9H4L4 574 aaPredicted RBP24.92■■□□□ 1.58
VARS2-209ENST00000477288 NBR1Q14596 966 aa24.9■■□□□ 1.58
VARS2-209ENST00000477288 KDM2AQ9Y2K7 1162 aa24.9■■□□□ 1.58
VARS2-209ENST00000477288 WDR43Q15061 677 aaKnown RBP eCLIP24.9■■□□□ 1.58
VARS2-209ENST00000477288 DDX10Q13206 875 aaKnown RBP24.89■■□□□ 1.57
VARS2-209ENST00000477288 CDK11BP21127 795 aaKnown RBP24.89■■□□□ 1.57
VARS2-209ENST00000477288 TMC1Q8TDI8 760 aa24.88■■□□□ 1.57
VARS2-209ENST00000477288 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.87■■□□□ 1.57
VARS2-209ENST00000477288 C14orf37Q86TY3 774 aa24.85■■□□□ 1.57
VARS2-209ENST00000477288 CCDC136Q96JN2 1154 aa24.83■■□□□ 1.57
VARS2-209ENST00000477288 TSPY4P0CV99 314 aa24.82■■□□□ 1.56
VARS2-209ENST00000477288 TSPY10P0CW01 314 aa24.82■■□□□ 1.56
VARS2-209ENST00000477288 GLIPR1L2Q4G1C9 344 aa24.81■■□□□ 1.56
VARS2-209ENST00000477288 PPP1R15AO75807 674 aaPredicted RBP24.74■■□□□ 1.55
VARS2-209ENST00000477288 MYH16Q9H6N6 1097 aa24.74■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms