RNA–Protein interactions for RNA: ENST00000625423.2

VARS2-213, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 2 BASIC

Gene VARS2, Length 3,362 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-213ENST00000625423 NISCHQ9Y2I1 1504 aa23.21■■□□□ 1.31
VARS2-213ENST00000625423 SHROOM4Q9ULL8 1493 aa19.89■□□□□ 0.77
VARS2-213ENST00000625423 CCDC180Q9P1Z9 1646 aa19.66■□□□□ 0.74
VARS2-213ENST00000625423 ZCCHC6Q5VYS8 1495 aaKnown RBP19.64■□□□□ 0.73
VARS2-213ENST00000625423 SUPT5HO00267 1087 aaKnown RBP19.54■□□□□ 0.72
VARS2-213ENST00000625423 DCAF8L2P0C7V8 631 aa19.37■□□□□ 0.69
VARS2-213ENST00000625423 DCAF1Q9Y4B6 1507 aa19.02■□□□□ 0.63
VARS2-213ENST00000625423 CHIC1Q5VXU3 224 aa19.01■□□□□ 0.63
VARS2-213ENST00000625423 MYO15BQ96JP2 1530 aa18.93■□□□□ 0.62
VARS2-213ENST00000625423 ABCC9O60706 1549 aa18.53■□□□□ 0.56
VARS2-213ENST00000625423 HRCP23327 699 aa18.5■□□□□ 0.55
VARS2-213ENST00000625423 SCRIBQ14160 1630 aa18.49■□□□□ 0.55
VARS2-213ENST00000625423 PCGF6Q9BYE7 350 aa18.48■□□□□ 0.55
VARS2-213ENST00000625423 LOC105371045A0A1W2PR82 267 aa18.47■□□□□ 0.55
VARS2-213ENST00000625423 RSF1Q96T23 1441 aaPredicted RBP18.41■□□□□ 0.54
VARS2-213ENST00000625423 RB1CC1Q8TDY2 1594 aa18.21■□□□□ 0.5
VARS2-213ENST00000625423 NACADO15069 1562 aa18.19■□□□□ 0.5
VARS2-213ENST00000625423 TRIM41Q8WV44 630 aa18.18■□□□□ 0.5
VARS2-213ENST00000625423 PPARGC1BQ86YN6 1023 aaKnown RBP18.14■□□□□ 0.49
VARS2-213ENST00000625423 CECR2Q9BXF3 1484 aa18.13■□□□□ 0.49
VARS2-213ENST00000625423 TRIM26Q12899 539 aaPredicted RBP18.1■□□□□ 0.49
VARS2-213ENST00000625423 MROH2BQ7Z745 1585 aa18.06■□□□□ 0.48
VARS2-213ENST00000625423 FAM9AQ8IZU1 332 aaPredicted RBP18.06■□□□□ 0.48
VARS2-213ENST00000625423 WIZO95785 1651 aa17.96■□□□□ 0.46
VARS2-213ENST00000625423 EHMT2Q96KQ7 1210 aa17.92■□□□□ 0.46
VARS2-213ENST00000625423 BAZ1AQ9NRL2 1556 aaPredicted RBP17.83■□□□□ 0.44
VARS2-213ENST00000625423 EIF4G1Q04637 1599 aaKnown RBP17.71■□□□□ 0.43
VARS2-213ENST00000625423 ZEB1P37275 1124 aaPredicted RBP17.71■□□□□ 0.43
VARS2-213ENST00000625423 PABPN1Q86U42 306 aaKnown RBP eCLIP17.7■□□□□ 0.422e-7■■■■□ 25.2
VARS2-213ENST00000625423 TOP2AP11388 1531 aaKnown RBP17.67■□□□□ 0.42
VARS2-213ENST00000625423 SMARCA4P51532 1647 aa17.65■□□□□ 0.42
VARS2-213ENST00000625423 CCDC88BA6NC98 1476 aa17.62■□□□□ 0.41
VARS2-213ENST00000625423 ABCC8Q09428 1581 aa17.59■□□□□ 0.41
VARS2-213ENST00000625423 UNC13AQ9UPW8 1703 aa17.59■□□□□ 0.41
VARS2-213ENST00000625423 SMARCA2P51531 1590 aa17.58■□□□□ 0.4
VARS2-213ENST00000625423 SOGA1O94964 1423 aa17.46■□□□□ 0.39
VARS2-213ENST00000625423 BICRAQ9NZM4 1560 aa17.41■□□□□ 0.38
VARS2-213ENST00000625423 CEP162Q5TB80 1403 aa17.39■□□□□ 0.38
VARS2-213ENST00000625423 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.39■□□□□ 0.37
VARS2-213ENST00000625423 CSRNP3Q8WYN3 585 aa17.37■□□□□ 0.37
VARS2-213ENST00000625423 WRNQ14191 1432 aaPredicted RBP eCLIP17.37■□□□□ 0.37
VARS2-213ENST00000625423 RUSC2Q8N2Y8 1516 aa17.37■□□□□ 0.37
VARS2-213ENST00000625423 TTBK1Q5TCY1 1321 aaPredicted RBP17.36■□□□□ 0.37
VARS2-213ENST00000625423 TNIKQ9UKE5 1360 aa17.36■□□□□ 0.37
VARS2-213ENST00000625423 CCER1Q8TC90 406 aaPredicted RBP17.34■□□□□ 0.37
VARS2-213ENST00000625423 EEA1Q15075 1411 aa17.34■□□□□ 0.37
VARS2-213ENST00000625423 UBTFP17480 764 aaKnown RBP17.32■□□□□ 0.36
VARS2-213ENST00000625423 PEG3Q9GZU2 1588 aa17.3■□□□□ 0.36
VARS2-213ENST00000625423 GOLGA3Q08378 1498 aa17.24■□□□□ 0.35
VARS2-213ENST00000625423 ATAD2BQ9ULI0 1458 aa17.22■□□□□ 0.35
VARS2-213ENST00000625423 SYNJ1O43426 1573 aa17.19■□□□□ 0.34
VARS2-213ENST00000625423 BAZ1BQ9UIG0 1483 aaKnown RBP17.17■□□□□ 0.34
VARS2-213ENST00000625423 CEP164Q9UPV0 1460 aa17.14■□□□□ 0.33
VARS2-213ENST00000625423 KIF21BO75037 1637 aa17.09■□□□□ 0.33
VARS2-213ENST00000625423 SCAF1Q9H7N4 1312 aaKnown RBP17.08■□□□□ 0.32
VARS2-213ENST00000625423 CLIP1P30622 1438 aa17.06■□□□□ 0.32
VARS2-213ENST00000625423 RAPGEF2Q9Y4G8 1499 aa17.02■□□□□ 0.32
VARS2-213ENST00000625423 DIEXFQ68CQ4 756 aaKnown RBP17.02■□□□□ 0.32
VARS2-213ENST00000625423 RANGAP1P46060 587 aaPredicted RBP16.99■□□□□ 0.31
VARS2-213ENST00000625423 VPS8Q8N3P4 1428 aa16.99■□□□□ 0.31
VARS2-213ENST00000625423 HNRNPUL2Q1KMD3 747 aaKnown RBP16.97■□□□□ 0.31
VARS2-213ENST00000625423 TOP2BQ02880 1626 aa16.96■□□□□ 0.31
VARS2-213ENST00000625423 APLP2Q06481 763 aa16.94■□□□□ 0.3
VARS2-213ENST00000625423 ACIN1Q9UKV3 1341 aaKnown RBP16.91■□□□□ 0.3
VARS2-213ENST00000625423 NEUROD1Q13562 356 aa16.89■□□□□ 0.29
VARS2-213ENST00000625423 ZNF316A6NFI3 1004 aaPredicted RBP16.88■□□□□ 0.29
VARS2-213ENST00000625423 BIVM-ERCC5R4GMW8 1640 aa16.88■□□□□ 0.29
VARS2-213ENST00000625423 NCAPD3P42695 1498 aa16.86■□□□□ 0.29
VARS2-213ENST00000625423 HMGXB3Q12766 1538 aa16.84■□□□□ 0.29
VARS2-213ENST00000625423 PRXQ9BXM0 1461 aa16.83■□□□□ 0.29
VARS2-213ENST00000625423 ERICH3Q5RHP9 1530 aa16.81■□□□□ 0.28
VARS2-213ENST00000625423 CUX1P39880 1505 aa16.81■□□□□ 0.28
VARS2-213ENST00000625423 CENPBP07199 599 aaPredicted RBP16.8■□□□□ 0.28
VARS2-213ENST00000625423 ARAP1Q96P48 1450 aa16.77■□□□□ 0.27
VARS2-213ENST00000625423 KIF27Q86VH2 1401 aa16.75■□□□□ 0.27
VARS2-213ENST00000625423 CFTRP13569 1480 aa16.75■□□□□ 0.27
VARS2-213ENST00000625423 KANK4Q5T7N3 995 aaPredicted RBP16.73■□□□□ 0.27
VARS2-213ENST00000625423 PELP1Q8IZL8 1130 aaKnown RBP16.72■□□□□ 0.27
VARS2-213ENST00000625423 GTF3C3Q9Y5Q9 886 aa16.72■□□□□ 0.27
VARS2-213ENST00000625423 MIER1Q8N108 512 aa16.66■□□□□ 0.26
VARS2-213ENST00000625423 YTHDC1Q96MU7 727 aaKnown RBP16.64■□□□□ 0.25
VARS2-213ENST00000625423 DHX57Q6P158 1386 aaKnown RBP16.63■□□□□ 0.25
VARS2-213ENST00000625423 ARHGAP35Q9NRY4 1499 aa16.62■□□□□ 0.25
VARS2-213ENST00000625423 CLSPNQ9HAW4 1339 aa16.59■□□□□ 0.25
VARS2-213ENST00000625423 RRBP1Q9P2E9 1410 aaKnown RBP16.59■□□□□ 0.25
VARS2-213ENST00000625423 CUX2O14529 1486 aa16.59■□□□□ 0.25
VARS2-213ENST00000625423 IGF1RP08069 1367 aa16.58■□□□□ 0.25
VARS2-213ENST00000625423 CADPSQ9ULU8 1353 aa16.56■□□□□ 0.24
VARS2-213ENST00000625423 CCNB3Q8WWL7 1395 aa16.53■□□□□ 0.24
VARS2-213ENST00000625423 PRDM2Q13029 1718 aa16.53■□□□□ 0.24
VARS2-213ENST00000625423 ITGAEP38570 1179 aa16.52■□□□□ 0.23
VARS2-213ENST00000625423 CARMIL1Q5VZK9 1371 aa16.51■□□□□ 0.23
VARS2-213ENST00000625423 FGD5Q6ZNL6 1462 aa16.5■□□□□ 0.23
VARS2-213ENST00000625423 TIAM1Q13009 1591 aa16.43■□□□□ 0.22
VARS2-213ENST00000625423 MAP3K1Q13233 1512 aa16.4■□□□□ 0.22
VARS2-213ENST00000625423 FANCD2Q9BXW9 1451 aa16.4■□□□□ 0.22
VARS2-213ENST00000625423 P3H3Q8IVL6 736 aa16.4■□□□□ 0.22
VARS2-213ENST00000625423 RAB3GAP2Q9H2M9 1393 aa16.4■□□□□ 0.22
VARS2-213ENST00000625423 CC2D2AQ9P2K1 1620 aa16.39■□□□□ 0.22
VARS2-213ENST00000625423 LRRC9Q6ZRR7 1453 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms