RNA–Protein interactions for RNA: ENST00000503742.5

UBE2D3-216, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 1 (best)

Gene UBE2D3, Length 1,977 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-216ENST00000503742 NISCHQ9Y2I1 1504 aa47.38■■■■■ 5.18
UBE2D3-216ENST00000503742 CCDC180Q9P1Z9 1646 aa41.05■■■■■ 4.16
UBE2D3-216ENST00000503742 ZCCHC6Q5VYS8 1495 aaKnown RBP39.91■■■■□ 3.98
UBE2D3-216ENST00000503742 DCAF1Q9Y4B6 1507 aa39.16■■■■□ 3.86
UBE2D3-216ENST00000503742 SHROOM4Q9ULL8 1493 aa39■■■■□ 3.83
UBE2D3-216ENST00000503742 DCAF8L2P0C7V8 631 aa38.93■■■■□ 3.82
UBE2D3-216ENST00000503742 MYO15BQ96JP2 1530 aa38.52■■■■□ 3.76
UBE2D3-216ENST00000503742 ABCC9O60706 1549 aa38.42■■■■□ 3.74
UBE2D3-216ENST00000503742 NACADO15069 1562 aa38.12■■■■□ 3.69
UBE2D3-216ENST00000503742 SCRIBQ14160 1630 aa37.85■■■■□ 3.65
UBE2D3-216ENST00000503742 SUPT5HO00267 1087 aaKnown RBP37.74■■■■□ 3.63
UBE2D3-216ENST00000503742 RB1CC1Q8TDY2 1594 aa37.67■■■■□ 3.62
UBE2D3-216ENST00000503742 UNC13AQ9UPW8 1703 aa37.01■■■■□ 3.52
UBE2D3-216ENST00000503742 RSF1Q96T23 1441 aaPredicted RBP36.96■■■■□ 3.51
UBE2D3-216ENST00000503742 CECR2Q9BXF3 1484 aa36.81■■■■□ 3.48
UBE2D3-216ENST00000503742 MROH2BQ7Z745 1585 aa36.65■■■■□ 3.46
UBE2D3-216ENST00000503742 BICRAQ9NZM4 1560 aa36.61■■■■□ 3.45
UBE2D3-216ENST00000503742 BAZ1AQ9NRL2 1556 aaPredicted RBP36.52■■■■□ 3.44
UBE2D3-216ENST00000503742 CHIC1Q5VXU3 224 aa36.42■■■■□ 3.42
UBE2D3-216ENST00000503742 WIZO95785 1651 aa36.37■■■■□ 3.41
UBE2D3-216ENST00000503742 PABPN1Q86U42 306 aaKnown RBP eCLIP36.35■■■■□ 3.41
UBE2D3-216ENST00000503742 SMARCA4P51532 1647 aa36.32■■■■□ 3.4
UBE2D3-216ENST00000503742 TOP2AP11388 1531 aaKnown RBP35.97■■■■□ 3.35
UBE2D3-216ENST00000503742 PEG3Q9GZU2 1588 aa35.86■■■■□ 3.33
UBE2D3-216ENST00000503742 SMARCA2P51531 1590 aa35.68■■■■□ 3.3
UBE2D3-216ENST00000503742 CCDC88BA6NC98 1476 aa35.64■■■■□ 3.3
UBE2D3-216ENST00000503742 EIF4G1Q04637 1599 aaKnown RBP35.61■■■■□ 3.29
UBE2D3-216ENST00000503742 ATAD2BQ9ULI0 1458 aa35.61■■■■□ 3.29
UBE2D3-216ENST00000503742 TRIM41Q8WV44 630 aa35.44■■■■□ 3.26
UBE2D3-216ENST00000503742 BAZ1BQ9UIG0 1483 aaKnown RBP35.4■■■■□ 3.26
UBE2D3-216ENST00000503742 NCAPD3P42695 1498 aa35.21■■■■□ 3.23
UBE2D3-216ENST00000503742 HMGXB3Q12766 1538 aa35.19■■■■□ 3.22
UBE2D3-216ENST00000503742 LOC105371045A0A1W2PR82 267 aa35.05■■■■□ 3.2
UBE2D3-216ENST00000503742 ABCC8Q09428 1581 aa35.05■■■■□ 3.2
UBE2D3-216ENST00000503742 FAM9AQ8IZU1 332 aaPredicted RBP34.82■■■■□ 3.16
UBE2D3-216ENST00000503742 CC2D2AQ9P2K1 1620 aa34.79■■■■□ 3.16
UBE2D3-216ENST00000503742 WRNQ14191 1432 aaPredicted RBP eCLIP34.74■■■■□ 3.155e-6■■■■■ 29.2
UBE2D3-216ENST00000503742 SYNJ1O43426 1573 aa34.61■■■■□ 3.13
UBE2D3-216ENST00000503742 CFTRP13569 1480 aa34.57■■■■□ 3.12
UBE2D3-216ENST00000503742 SOGA1O94964 1423 aa34.5■■■■□ 3.11
UBE2D3-216ENST00000503742 EEA1Q15075 1411 aa34.47■■■■□ 3.11
UBE2D3-216ENST00000503742 TOP2BQ02880 1626 aa34.42■■■■□ 3.1
UBE2D3-216ENST00000503742 PRDM2Q13029 1718 aa34.41■■■■□ 3.1
UBE2D3-216ENST00000503742 BIVM-ERCC5R4GMW8 1640 aa34.37■■■■□ 3.09
UBE2D3-216ENST00000503742 RUSC2Q8N2Y8 1516 aa34.37■■■■□ 3.09
UBE2D3-216ENST00000503742 CADPSQ9ULU8 1353 aa34.34■■■■□ 3.09
UBE2D3-216ENST00000503742 EHMT2Q96KQ7 1210 aa34.31■■■■□ 3.08
UBE2D3-216ENST00000503742 CSRNP3Q8WYN3 585 aa34.27■■■■□ 3.08
UBE2D3-216ENST00000503742 CUX1P39880 1505 aa34.23■■■■□ 3.07
UBE2D3-216ENST00000503742 TNIKQ9UKE5 1360 aa34.04■■■■□ 3.04
UBE2D3-216ENST00000503742 GOLGA3Q08378 1498 aa34.03■■■■□ 3.04
UBE2D3-216ENST00000503742 KIF21BO75037 1637 aa34.03■■■■□ 3.04
UBE2D3-216ENST00000503742 CEP164Q9UPV0 1460 aa33.99■■■■□ 3.03
UBE2D3-216ENST00000503742 FANCD2Q9BXW9 1451 aa33.96■■■■□ 3.03
UBE2D3-216ENST00000503742 PCGF6Q9BYE7 350 aa33.92■■■■□ 3.02
UBE2D3-216ENST00000503742 NESP48681 1621 aa33.92■■■■□ 3.02
UBE2D3-216ENST00000503742 LAMC3Q9Y6N6 1575 aa33.91■■■■□ 3.02
UBE2D3-216ENST00000503742 CEP162Q5TB80 1403 aa33.89■■■■□ 3.02
UBE2D3-216ENST00000503742 UBTFP17480 764 aaKnown RBP33.85■■■■□ 3.01
UBE2D3-216ENST00000503742 DNAJC5BQ9UF47 199 aa33.85■■■■□ 3.01
UBE2D3-216ENST00000503742 KIF27Q86VH2 1401 aa33.8■■■■□ 3
UBE2D3-216ENST00000503742 TRIM26Q12899 539 aaPredicted RBP33.79■■■■□ 3
UBE2D3-216ENST00000503742 RAPGEF2Q9Y4G8 1499 aa33.77■■■■□ 3
UBE2D3-216ENST00000503742 FGD5Q6ZNL6 1462 aa33.76■■■■□ 3
UBE2D3-216ENST00000503742 PRXQ9BXM0 1461 aa33.74■■■□□ 2.99
UBE2D3-216ENST00000503742 DNMBPQ6XZF7 1577 aa33.74■■■□□ 2.99
UBE2D3-216ENST00000503742 ERICH3Q5RHP9 1530 aa33.71■■■□□ 2.99
UBE2D3-216ENST00000503742 TOPBP1Q92547 1522 aa33.66■■■□□ 2.98
UBE2D3-216ENST00000503742 PDS5BQ9NTI5 1447 aa33.62■■■□□ 2.97
UBE2D3-216ENST00000503742 CUX2O14529 1486 aa33.62■■■□□ 2.97
UBE2D3-216ENST00000503742 URB2Q14146 1524 aaKnown RBP33.54■■■□□ 2.96
UBE2D3-216ENST00000503742 POLA1P09884 1462 aaPredicted RBP33.54■■■□□ 2.96
UBE2D3-216ENST00000503742 CLIP1P30622 1438 aa33.51■■■□□ 2.96
UBE2D3-216ENST00000503742 IGF1RP08069 1367 aa33.5■■■□□ 2.95
UBE2D3-216ENST00000503742 KIF21AQ7Z4S6 1674 aa33.49■■■□□ 2.95
UBE2D3-216ENST00000503742 ABCA10Q8WWZ4 1543 aa33.47■■■□□ 2.95
UBE2D3-216ENST00000503742 RAD54L2Q9Y4B4 1467 aa33.44■■■□□ 2.94
UBE2D3-216ENST00000503742 HRCP23327 699 aa33.34■■■□□ 2.93
UBE2D3-216ENST00000503742 PPARGC1BQ86YN6 1023 aaKnown RBP33.34■■■□□ 2.93
UBE2D3-216ENST00000503742 WDR97A6NE52 1622 aa33.33■■■□□ 2.93
UBE2D3-216ENST00000503742 CARMIL1Q5VZK9 1371 aa33.32■■■□□ 2.92
UBE2D3-216ENST00000503742 VPS8Q8N3P4 1428 aa33.29■■■□□ 2.92
UBE2D3-216ENST00000503742 MRC2Q9UBG0 1479 aa33.18■■■□□ 2.9
UBE2D3-216ENST00000503742 ABCA5Q8WWZ7 1642 aa33.17■■■□□ 2.9
UBE2D3-216ENST00000503742 CUL7Q14999 1698 aa33.16■■■□□ 2.9
UBE2D3-216ENST00000503742 ARAP1Q96P48 1450 aa33.16■■■□□ 2.9
UBE2D3-216ENST00000503742 RANGAP1P46060 587 aaPredicted RBP33.16■■■□□ 2.9
UBE2D3-216ENST00000503742 TARBP1Q13395 1621 aaKnown RBP33.13■■■□□ 2.89
UBE2D3-216ENST00000503742 ARHGAP35Q9NRY4 1499 aa33.06■■■□□ 2.88
UBE2D3-216ENST00000503742 TDRD9Q8NDG6 1382 aaKnown RBP33.06■■■□□ 2.88
UBE2D3-216ENST00000503742 GAPVD1Q14C86 1478 aa33.06■■■□□ 2.88
UBE2D3-216ENST00000503742 WDR62O43379 1518 aa33.01■■■□□ 2.87
UBE2D3-216ENST00000503742 TTBK1Q5TCY1 1321 aaPredicted RBP32.96■■■□□ 2.87
UBE2D3-216ENST00000503742 APLP2Q06481 763 aa32.9■■■□□ 2.86
UBE2D3-216ENST00000503742 CTTNBP2Q8WZ74 1663 aa32.87■■■□□ 2.85
UBE2D3-216ENST00000503742 ERCC6Q03468 1493 aa32.85■■■□□ 2.85
UBE2D3-216ENST00000503742 IFT140Q96RY7 1462 aa32.85■■■□□ 2.85
UBE2D3-216ENST00000503742 PBRM1Q86U86 1689 aa32.84■■■□□ 2.85
UBE2D3-216ENST00000503742 THOC2Q8NI27 1593 aaKnown RBP32.81■■■□□ 2.84
UBE2D3-216ENST00000503742 AQRO60306 1485 aaKnown RBP eCLIP32.78■■■□□ 2.842e-7■■■■□ 25.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms