RNA–Protein interactions for RNA: ENST00000508249.1

UBE2D3-223, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

TSL 4

Gene UBE2D3, Length 604 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-223ENST00000508249 NISCHQ9Y2I1 1504 aa23.84■■□□□ 1.41
UBE2D3-223ENST00000508249 ABCC9O60706 1549 aa22.01■■□□□ 1.11
UBE2D3-223ENST00000508249 CCDC180Q9P1Z9 1646 aa21.69■■□□□ 1.06
UBE2D3-223ENST00000508249 DNAJC5BQ9UF47 199 aa21.1■□□□□ 0.97
UBE2D3-223ENST00000508249 RB1CC1Q8TDY2 1594 aa20.76■□□□□ 0.91
UBE2D3-223ENST00000508249 UNC13AQ9UPW8 1703 aa20.53■□□□□ 0.88
UBE2D3-223ENST00000508249 NACADO15069 1562 aa20.52■□□□□ 0.88
UBE2D3-223ENST00000508249 BICRAQ9NZM4 1560 aa20.34■□□□□ 0.85
UBE2D3-223ENST00000508249 PABPN1Q86U42 306 aaKnown RBP eCLIP20.32■□□□□ 0.84
UBE2D3-223ENST00000508249 MYO15BQ96JP2 1530 aa20.12■□□□□ 0.81
UBE2D3-223ENST00000508249 DCAF8L2P0C7V8 631 aa19.98■□□□□ 0.79
UBE2D3-223ENST00000508249 CC2D2AQ9P2K1 1620 aa19.94■□□□□ 0.78
UBE2D3-223ENST00000508249 SHROOM4Q9ULL8 1493 aa19.9■□□□□ 0.78
UBE2D3-223ENST00000508249 CECR2Q9BXF3 1484 aa19.87■□□□□ 0.77
UBE2D3-223ENST00000508249 EIF4G1Q04637 1599 aaKnown RBP19.78■□□□□ 0.76
UBE2D3-223ENST00000508249 ZCCHC6Q5VYS8 1495 aaKnown RBP19.72■□□□□ 0.75
UBE2D3-223ENST00000508249 DCAF1Q9Y4B6 1507 aa19.7■□□□□ 0.74
UBE2D3-223ENST00000508249 SCRIBQ14160 1630 aa19.68■□□□□ 0.74
UBE2D3-223ENST00000508249 DNAJC5Q9H3Z4 198 aa19.62■□□□□ 0.73
UBE2D3-223ENST00000508249 CUX2O14529 1486 aa19.18■□□□□ 0.66
UBE2D3-223ENST00000508249 ERCC6Q03468 1493 aa18.95■□□□□ 0.62
UBE2D3-223ENST00000508249 NCAPD3P42695 1498 aa18.94■□□□□ 0.62
UBE2D3-223ENST00000508249 THOC2Q8NI27 1593 aaKnown RBP18.85■□□□□ 0.61
UBE2D3-223ENST00000508249 NESP48681 1621 aa18.84■□□□□ 0.61
UBE2D3-223ENST00000508249 ATAD2BQ9ULI0 1458 aa18.83■□□□□ 0.6
UBE2D3-223ENST00000508249 HMGXB3Q12766 1538 aa18.82■□□□□ 0.6
UBE2D3-223ENST00000508249 SMARCA4P51532 1647 aa18.75■□□□□ 0.59
UBE2D3-223ENST00000508249 SMARCA2P51531 1590 aa18.72■□□□□ 0.59
UBE2D3-223ENST00000508249 KIF21AQ7Z4S6 1674 aa18.66■□□□□ 0.58
UBE2D3-223ENST00000508249 PEG3Q9GZU2 1588 aa18.61■□□□□ 0.57
UBE2D3-223ENST00000508249 LAMC3Q9Y6N6 1575 aa18.61■□□□□ 0.57
UBE2D3-223ENST00000508249 BAZ1BQ9UIG0 1483 aaKnown RBP18.57■□□□□ 0.56
UBE2D3-223ENST00000508249 BAZ1AQ9NRL2 1556 aaPredicted RBP18.51■□□□□ 0.55
UBE2D3-223ENST00000508249 TRIM41Q8WV44 630 aa18.46■□□□□ 0.55
UBE2D3-223ENST00000508249 WDR62O43379 1518 aa18.41■□□□□ 0.54
UBE2D3-223ENST00000508249 MROH2BQ7Z745 1585 aa18.39■□□□□ 0.53
UBE2D3-223ENST00000508249 PDS5BQ9NTI5 1447 aa18.39■□□□□ 0.53
UBE2D3-223ENST00000508249 MRC2Q9UBG0 1479 aa18.36■□□□□ 0.53
UBE2D3-223ENST00000508249 CADPSQ9ULU8 1353 aa18.27■□□□□ 0.51
UBE2D3-223ENST00000508249 WIZO95785 1651 aa18.18■□□□□ 0.5
UBE2D3-223ENST00000508249 CEP164Q9UPV0 1460 aa18.17■□□□□ 0.5
UBE2D3-223ENST00000508249 RIMBP3CA6NJZ7 1639 aa18.12■□□□□ 0.49
UBE2D3-223ENST00000508249 RIMBP3BA6NNM3 1639 aa18.12■□□□□ 0.49
UBE2D3-223ENST00000508249 RIMBP3Q9UFD9 1639 aa18.12■□□□□ 0.49
UBE2D3-223ENST00000508249 FANCD2Q9BXW9 1451 aa18.11■□□□□ 0.49
UBE2D3-223ENST00000508249 URB2Q14146 1524 aaKnown RBP18.08■□□□□ 0.48
UBE2D3-223ENST00000508249 CFTRP13569 1480 aa18.04■□□□□ 0.48
UBE2D3-223ENST00000508249 OSCARQ8IYS5 282 aa18.03■□□□□ 0.48
UBE2D3-223ENST00000508249 PRDM2Q13029 1718 aa17.98■□□□□ 0.47
UBE2D3-223ENST00000508249 ARHGEF11O15085 1522 aa17.97■□□□□ 0.47
UBE2D3-223ENST00000508249 ZNF608Q9ULD9 1512 aaPredicted RBP17.91■□□□□ 0.46
UBE2D3-223ENST00000508249 TOP2AP11388 1531 aaKnown RBP17.88■□□□□ 0.45
UBE2D3-223ENST00000508249 EIF4G3O43432 1585 aaKnown RBP17.84■□□□□ 0.45
UBE2D3-223ENST00000508249 CHD1O14646 1710 aa17.82■□□□□ 0.44
UBE2D3-223ENST00000508249 IFT140Q96RY7 1462 aa17.81■□□□□ 0.44
UBE2D3-223ENST00000508249 ARAP1Q96P48 1450 aa17.79■□□□□ 0.44
UBE2D3-223ENST00000508249 RSF1Q96T23 1441 aaPredicted RBP17.79■□□□□ 0.44
UBE2D3-223ENST00000508249 TOPBP1Q92547 1522 aa17.76■□□□□ 0.43
UBE2D3-223ENST00000508249 TARBP1Q13395 1621 aaKnown RBP17.72■□□□□ 0.43
UBE2D3-223ENST00000508249 DNMBPQ6XZF7 1577 aa17.66■□□□□ 0.42
UBE2D3-223ENST00000508249 CYB5RLQ6IPT4 315 aa17.66■□□□□ 0.42
UBE2D3-223ENST00000508249 CCDC88BA6NC98 1476 aa17.63■□□□□ 0.41
UBE2D3-223ENST00000508249 AQRO60306 1485 aaKnown RBP eCLIP17.61■□□□□ 0.412e-7■■■■■ 32
UBE2D3-223ENST00000508249 CLASP1Q7Z460 1538 aa17.59■□□□□ 0.41
UBE2D3-223ENST00000508249 ABCC8Q09428 1581 aa17.57■□□□□ 0.4
UBE2D3-223ENST00000508249 POLA1P09884 1462 aaPredicted RBP17.56■□□□□ 0.4
UBE2D3-223ENST00000508249 TRHP20396 242 aaPredicted RBP17.54■□□□□ 0.4
UBE2D3-223ENST00000508249 RAD54L2Q9Y4B4 1467 aa17.47■□□□□ 0.39
UBE2D3-223ENST00000508249 SNAPC4Q5SXM2 1469 aa17.46■□□□□ 0.39
UBE2D3-223ENST00000508249 WDR97A6NE52 1622 aa17.45■□□□□ 0.38
UBE2D3-223ENST00000508249 SYNJ1O43426 1573 aa17.42■□□□□ 0.38
UBE2D3-223ENST00000508249 TDRD9Q8NDG6 1382 aaKnown RBP17.39■□□□□ 0.37
UBE2D3-223ENST00000508249 FBLN2P98095 1184 aa17.38■□□□□ 0.37
UBE2D3-223ENST00000508249 MAGI1Q96QZ7 1491 aaPredicted RBP17.37■□□□□ 0.37
UBE2D3-223ENST00000508249 FGD5Q6ZNL6 1462 aa17.36■□□□□ 0.37
UBE2D3-223ENST00000508249 PBRM1Q86U86 1689 aa17.35■□□□□ 0.37
UBE2D3-223ENST00000508249 SOGA1O94964 1423 aa17.34■□□□□ 0.37
UBE2D3-223ENST00000508249 CUX1P39880 1505 aa17.31■□□□□ 0.36
UBE2D3-223ENST00000508249 SYNJ2O15056 1496 aa17.31■□□□□ 0.36
UBE2D3-223ENST00000508249 AEBP2Q6ZN18 517 aaPredicted RBP17.31■□□□□ 0.36
UBE2D3-223ENST00000508249 GAPVD1Q14C86 1478 aa17.31■□□□□ 0.36
UBE2D3-223ENST00000508249 ERCC6L2Q5T890 1561 aa17.3■□□□□ 0.36
UBE2D3-223ENST00000508249 GRIN2BQ13224 1484 aa17.29■□□□□ 0.36
UBE2D3-223ENST00000508249 ABCA5Q8WWZ7 1642 aa17.26■□□□□ 0.35
UBE2D3-223ENST00000508249 KIF13AQ9H1H9 1805 aa17.24■□□□□ 0.35
UBE2D3-223ENST00000508249 CHMP7Q8WUX9 453 aaPredicted RBP17.21■□□□□ 0.35
UBE2D3-223ENST00000508249 SHROOM2Q13796 1616 aa17.18■□□□□ 0.34
UBE2D3-223ENST00000508249 CEP170Q5SW79 1584 aa17.16■□□□□ 0.34
UBE2D3-223ENST00000508249 ABCA10Q8WWZ4 1543 aa17.14■□□□□ 0.33
UBE2D3-223ENST00000508249 ADAMTS12P58397 1594 aa17.14■□□□□ 0.33
UBE2D3-223ENST00000508249 GRIN2AQ12879 1464 aa17.12■□□□□ 0.33
UBE2D3-223ENST00000508249 NUP160Q12769 1436 aa17.11■□□□□ 0.33
UBE2D3-223ENST00000508249 DIP2BQ9P265 1576 aa16.97■□□□□ 0.31
UBE2D3-223ENST00000508249 BIVM-ERCC5R4GMW8 1640 aa16.96■□□□□ 0.3
UBE2D3-223ENST00000508249 ABCC10Q5T3U5 1492 aa16.93■□□□□ 0.3
UBE2D3-223ENST00000508249 MAPKBP1O60336 1514 aa16.93■□□□□ 0.3
UBE2D3-223ENST00000508249 RUSC2Q8N2Y8 1516 aa16.93■□□□□ 0.3
UBE2D3-223ENST00000508249 FHAD1B1AJZ9 1412 aa16.92■□□□□ 0.3
UBE2D3-223ENST00000508249 ADCY10Q96PN6 1610 aa16.92■□□□□ 0.3
UBE2D3-223ENST00000508249 TOP2BQ02880 1626 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms