RNA–Protein interactions for RNA: ENST00000490699.1

VARS2-210, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 3

Gene VARS2, Length 719 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-210ENST00000490699 AEBP2Q6ZN18 517 aaPredicted RBP25.6■■□□□ 1.69
VARS2-210ENST00000490699 NISCHQ9Y2I1 1504 aa25.58■■□□□ 1.68
VARS2-210ENST00000490699 CHIC1Q5VXU3 224 aa23.9■■□□□ 1.42
VARS2-210ENST00000490699 CCDC180Q9P1Z9 1646 aa22.64■■□□□ 1.21
VARS2-210ENST00000490699 SENP3Q9H4L4 574 aaPredicted RBP21.98■■□□□ 1.11
VARS2-210ENST00000490699 ABCC9O60706 1549 aa21.69■■□□□ 1.06
VARS2-210ENST00000490699 PHF23Q9BUL5 403 aaPredicted RBP21.57■■□□□ 1.04
VARS2-210ENST00000490699 ZCCHC6Q5VYS8 1495 aaKnown RBP21.39■■□□□ 1.01
VARS2-210ENST00000490699 DCAF8L2P0C7V8 631 aa21.29■■□□□ 1
VARS2-210ENST00000490699 DCAF1Q9Y4B6 1507 aa21.2■□□□□ 0.98
VARS2-210ENST00000490699 NACADO15069 1562 aa21.17■□□□□ 0.98
VARS2-210ENST00000490699 MYO15BQ96JP2 1530 aa21.14■□□□□ 0.98
VARS2-210ENST00000490699 RB1CC1Q8TDY2 1594 aa21.11■□□□□ 0.97
VARS2-210ENST00000490699 SCRIBQ14160 1630 aa20.65■□□□□ 0.9
VARS2-210ENST00000490699 POTEDQ86YR6 584 aa20.61■□□□□ 0.89
VARS2-210ENST00000490699 FOXD1Q16676 465 aa20.59■□□□□ 0.89
VARS2-210ENST00000490699 UNC13AQ9UPW8 1703 aa20.55■□□□□ 0.88
VARS2-210ENST00000490699 SHROOM4Q9ULL8 1493 aa20.47■□□□□ 0.87
VARS2-210ENST00000490699 BICRAQ9NZM4 1560 aa20.32■□□□□ 0.84
VARS2-210ENST00000490699 PABPN1Q86U42 306 aaKnown RBP eCLIP20.3■□□□□ 0.842e-10■■■□□ 15.2
VARS2-210ENST00000490699 BAZ1AQ9NRL2 1556 aaPredicted RBP19.86■□□□□ 0.77
VARS2-210ENST00000490699 EIF4G1Q04637 1599 aaKnown RBP19.83■□□□□ 0.76
VARS2-210ENST00000490699 CECR2Q9BXF3 1484 aa19.81■□□□□ 0.76
VARS2-210ENST00000490699 SMARCA4P51532 1647 aa19.78■□□□□ 0.76
VARS2-210ENST00000490699 MROH2BQ7Z745 1585 aa19.68■□□□□ 0.74
VARS2-210ENST00000490699 CC2D2AQ9P2K1 1620 aa19.64■□□□□ 0.73
VARS2-210ENST00000490699 SMARCA2P51531 1590 aa19.62■□□□□ 0.73
VARS2-210ENST00000490699 RSF1Q96T23 1441 aaPredicted RBP19.61■□□□□ 0.73
VARS2-210ENST00000490699 MSH5O43196 834 aa19.61■□□□□ 0.73
VARS2-210ENST00000490699 PEG3Q9GZU2 1588 aa19.56■□□□□ 0.72
VARS2-210ENST00000490699 ATAD2BQ9ULI0 1458 aa19.54■□□□□ 0.72
VARS2-210ENST00000490699 WIZO95785 1651 aa19.52■□□□□ 0.71
VARS2-210ENST00000490699 SUPT5HO00267 1087 aaKnown RBP19.5■□□□□ 0.71
VARS2-210ENST00000490699 BAZ1BQ9UIG0 1483 aaKnown RBP19.48■□□□□ 0.71
VARS2-210ENST00000490699 NCAPD3P42695 1498 aa19.47■□□□□ 0.71
VARS2-210ENST00000490699 HMGXB3Q12766 1538 aa19.46■□□□□ 0.71
VARS2-210ENST00000490699 TOP2AP11388 1531 aaKnown RBP19.38■□□□□ 0.69
VARS2-210ENST00000490699 DNAJC5BQ9UF47 199 aa19.37■□□□□ 0.69
VARS2-210ENST00000490699 CCDC88BA6NC98 1476 aa19.09■□□□□ 0.65
VARS2-210ENST00000490699 PIAS4Q8N2W9 510 aaPredicted RBP19.03■□□□□ 0.64
VARS2-210ENST00000490699 LAMC3Q9Y6N6 1575 aa18.96■□□□□ 0.63
VARS2-210ENST00000490699 CADPSQ9ULU8 1353 aa18.94■□□□□ 0.62
VARS2-210ENST00000490699 CFTRP13569 1480 aa18.9■□□□□ 0.62
VARS2-210ENST00000490699 PRDM2Q13029 1718 aa18.88■□□□□ 0.61
VARS2-210ENST00000490699 PDS5BQ9NTI5 1447 aa18.83■□□□□ 0.61
VARS2-210ENST00000490699 NESP48681 1621 aa18.83■□□□□ 0.61
VARS2-210ENST00000490699 ERCC6Q03468 1493 aa18.77■□□□□ 0.59
VARS2-210ENST00000490699 FANCD2Q9BXW9 1451 aa18.74■□□□□ 0.59
VARS2-210ENST00000490699 CEP164Q9UPV0 1460 aa18.72■□□□□ 0.59
VARS2-210ENST00000490699 KIF21AQ7Z4S6 1674 aa18.69■□□□□ 0.58
VARS2-210ENST00000490699 ABCC8Q09428 1581 aa18.59■□□□□ 0.57
VARS2-210ENST00000490699 MRC2Q9UBG0 1479 aa18.58■□□□□ 0.57
VARS2-210ENST00000490699 PPP6R1Q9UPN7 881 aa18.58■□□□□ 0.56
VARS2-210ENST00000490699 WRNQ14191 1432 aaPredicted RBP eCLIP18.56■□□□□ 0.56
VARS2-210ENST00000490699 DNMBPQ6XZF7 1577 aa18.52■□□□□ 0.56
VARS2-210ENST00000490699 THOC2Q8NI27 1593 aaKnown RBP18.5■□□□□ 0.55
VARS2-210ENST00000490699 WDR62O43379 1518 aa18.49■□□□□ 0.55
VARS2-210ENST00000490699 URB2Q14146 1524 aaKnown RBP18.48■□□□□ 0.55
VARS2-210ENST00000490699 ADRA2BP18089 450 aa18.47■□□□□ 0.55
VARS2-210ENST00000490699 TOPBP1Q92547 1522 aa18.47■□□□□ 0.55
VARS2-210ENST00000490699 TOP2BQ02880 1626 aa18.45■□□□□ 0.54
VARS2-210ENST00000490699 CUX1P39880 1505 aa18.45■□□□□ 0.54
VARS2-210ENST00000490699 BIVM-ERCC5R4GMW8 1640 aa18.45■□□□□ 0.54
VARS2-210ENST00000490699 TRIM41Q8WV44 630 aa18.44■□□□□ 0.54
VARS2-210ENST00000490699 SYNJ1O43426 1573 aa18.43■□□□□ 0.54
VARS2-210ENST00000490699 CUX2O14529 1486 aa18.37■□□□□ 0.53
VARS2-210ENST00000490699 FGD5Q6ZNL6 1462 aa18.37■□□□□ 0.53
VARS2-210ENST00000490699 PLPPR3Q6T4P5 718 aa18.35■□□□□ 0.53
VARS2-210ENST00000490699 POLA1P09884 1462 aaPredicted RBP18.33■□□□□ 0.53
VARS2-210ENST00000490699 IFT140Q96RY7 1462 aa18.3■□□□□ 0.52
VARS2-210ENST00000490699 SOGA1O94964 1423 aa18.3■□□□□ 0.52
VARS2-210ENST00000490699 RAD54L2Q9Y4B4 1467 aa18.22■□□□□ 0.51
VARS2-210ENST00000490699 TARBP1Q13395 1621 aaKnown RBP18.21■□□□□ 0.51
VARS2-210ENST00000490699 ABCA10Q8WWZ4 1543 aa18.21■□□□□ 0.51
VARS2-210ENST00000490699 WDR97A6NE52 1622 aa18.2■□□□□ 0.5
VARS2-210ENST00000490699 KIF27Q86VH2 1401 aa18.17■□□□□ 0.5
VARS2-210ENST00000490699 EEA1Q15075 1411 aa18.13■□□□□ 0.49
VARS2-210ENST00000490699 TDRD9Q8NDG6 1382 aaKnown RBP18.11■□□□□ 0.49
VARS2-210ENST00000490699 EIF4G3O43432 1585 aaKnown RBP18.11■□□□□ 0.49
VARS2-210ENST00000490699 GAPVD1Q14C86 1478 aa18.1■□□□□ 0.49
VARS2-210ENST00000490699 ABCA5Q8WWZ7 1642 aa18.09■□□□□ 0.49
VARS2-210ENST00000490699 ZNF608Q9ULD9 1512 aaPredicted RBP18.08■□□□□ 0.49
VARS2-210ENST00000490699 AQRO60306 1485 aaKnown RBP eCLIP18.07■□□□□ 0.48
VARS2-210ENST00000490699 GRIN2BQ13224 1484 aa18.06■□□□□ 0.48
VARS2-210ENST00000490699 PBRM1Q86U86 1689 aa18.06■□□□□ 0.48
VARS2-210ENST00000490699 ERICH3Q5RHP9 1530 aa18.03■□□□□ 0.48
VARS2-210ENST00000490699 FAM9AQ8IZU1 332 aaPredicted RBP18.01■□□□□ 0.47
VARS2-210ENST00000490699 CUL7Q14999 1698 aa17.99■□□□□ 0.47
VARS2-210ENST00000490699 MAGI1Q96QZ7 1491 aaPredicted RBP17.98■□□□□ 0.47
VARS2-210ENST00000490699 RUSC2Q8N2Y8 1516 aa17.98■□□□□ 0.47
VARS2-210ENST00000490699 CSRNP3Q8WYN3 585 aa17.97■□□□□ 0.47
VARS2-210ENST00000490699 SNAPC4Q5SXM2 1469 aa17.95■□□□□ 0.46
VARS2-210ENST00000490699 IGF1RP08069 1367 aa17.93■□□□□ 0.46
VARS2-210ENST00000490699 ADAMTS12P58397 1594 aa17.91■□□□□ 0.46
VARS2-210ENST00000490699 FHAD1B1AJZ9 1412 aa17.91■□□□□ 0.46
VARS2-210ENST00000490699 CARMIL1Q5VZK9 1371 aa17.91■□□□□ 0.46
VARS2-210ENST00000490699 SYNJ2O15056 1496 aa17.88■□□□□ 0.45
VARS2-210ENST00000490699 CHMP7Q8WUX9 453 aaPredicted RBP17.88■□□□□ 0.45
VARS2-210ENST00000490699 FBLN2P98095 1184 aa17.87■□□□□ 0.45
VARS2-210ENST00000490699 RAPGEF2Q9Y4G8 1499 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms