RNA–Protein interactions for RNA: ENST00000542001.5

VARS2-212, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VARS2, Length 4,064 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-212ENST00000542001 NISCHQ9Y2I1 1504 aa29.42■■■□□ 2.3
VARS2-212ENST00000542001 DCAF8L2P0C7V8 631 aa28.67■■■□□ 2.18
VARS2-212ENST00000542001 SUPT5HO00267 1087 aaKnown RBP27.99■■■□□ 2.07
VARS2-212ENST00000542001 SHROOM4Q9ULL8 1493 aa27.98■■■□□ 2.07
VARS2-212ENST00000542001 EHMT2Q96KQ7 1210 aa26.92■■□□□ 1.9
VARS2-212ENST00000542001 FAM9AQ8IZU1 332 aaPredicted RBP26.31■■□□□ 1.8
VARS2-212ENST00000542001 PCGF6Q9BYE7 350 aa26.29■■□□□ 1.8
VARS2-212ENST00000542001 TTBK1Q5TCY1 1321 aaPredicted RBP25.93■■□□□ 1.74
VARS2-212ENST00000542001 LOC105371045A0A1W2PR82 267 aa25.72■■□□□ 1.71
VARS2-212ENST00000542001 CHIC1Q5VXU3 224 aa25.65■■□□□ 1.7
VARS2-212ENST00000542001 PPARGC1BQ86YN6 1023 aaKnown RBP25.62■■□□□ 1.69
VARS2-212ENST00000542001 TRIM41Q8WV44 630 aa25.6■■□□□ 1.69
VARS2-212ENST00000542001 RANGAP1P46060 587 aaPredicted RBP25.42■■□□□ 1.66
VARS2-212ENST00000542001 HRCP23327 699 aa25.19■■□□□ 1.62
VARS2-212ENST00000542001 CCER1Q8TC90 406 aaPredicted RBP25.01■■□□□ 1.59
VARS2-212ENST00000542001 UBTFP17480 764 aaKnown RBP24.97■■□□□ 1.59
VARS2-212ENST00000542001 TRIM26Q12899 539 aaPredicted RBP24.93■■□□□ 1.58
VARS2-212ENST00000542001 APLP2Q06481 763 aa24.9■■□□□ 1.58
VARS2-212ENST00000542001 ABCC9O60706 1549 aa24.72■■□□□ 1.55
VARS2-212ENST00000542001 ZEB1P37275 1124 aaPredicted RBP24.63■■□□□ 1.53
VARS2-212ENST00000542001 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.62■■□□□ 1.53
VARS2-212ENST00000542001 YTHDC1Q96MU7 727 aaKnown RBP24.6■■□□□ 1.53
VARS2-212ENST00000542001 PABPN1Q86U42 306 aaKnown RBP eCLIP24.56■■□□□ 1.522e-7■■■■□ 25.2
VARS2-212ENST00000542001 ATP1B4Q9UN42 357 aaPredicted RBP24.55■■□□□ 1.52
VARS2-212ENST00000542001 ZCCHC6Q5VYS8 1495 aaKnown RBP24.51■■□□□ 1.51
VARS2-212ENST00000542001 MYO15BQ96JP2 1530 aa24.49■■□□□ 1.51
VARS2-212ENST00000542001 HNRNPUL2Q1KMD3 747 aaKnown RBP24.45■■□□□ 1.5
VARS2-212ENST00000542001 ITGAEP38570 1179 aa24.34■■□□□ 1.49
VARS2-212ENST00000542001 CENPBP07199 599 aaPredicted RBP24.23■■□□□ 1.47
VARS2-212ENST00000542001 SCRIBQ14160 1630 aa24.13■■□□□ 1.45
VARS2-212ENST00000542001 DIEXFQ68CQ4 756 aaKnown RBP23.96■■□□□ 1.43
VARS2-212ENST00000542001 PELP1Q8IZL8 1130 aaKnown RBP23.9■■□□□ 1.42
VARS2-212ENST00000542001 CCDC180Q9P1Z9 1646 aa23.8■■□□□ 1.4
VARS2-212ENST00000542001 RSF1Q96T23 1441 aaPredicted RBP23.76■■□□□ 1.39
VARS2-212ENST00000542001 CSRNP3Q8WYN3 585 aa23.76■■□□□ 1.39
VARS2-212ENST00000542001 DCAF1Q9Y4B6 1507 aa23.73■■□□□ 1.39
VARS2-212ENST00000542001 CNGB1Q14028 1251 aaPredicted RBP23.69■■□□□ 1.38
VARS2-212ENST00000542001 GTF3C3Q9Y5Q9 886 aa23.65■■□□□ 1.38
VARS2-212ENST00000542001 P3H3Q8IVL6 736 aa23.59■■□□□ 1.37
VARS2-212ENST00000542001 FAM50AQ14320 339 aaKnown RBP23.56■■□□□ 1.36
VARS2-212ENST00000542001 NEUROD1Q13562 356 aa23.54■■□□□ 1.36
VARS2-212ENST00000542001 CECR2Q9BXF3 1484 aa23.53■■□□□ 1.36
VARS2-212ENST00000542001 POLR3GLQ9BT43 218 aa23.45■■□□□ 1.34
VARS2-212ENST00000542001 ZNF316A6NFI3 1004 aaPredicted RBP23.43■■□□□ 1.34
VARS2-212ENST00000542001 ARID3CA6NKF2 412 aa23.38■■□□□ 1.33
VARS2-212ENST00000542001 ACIN1Q9UKV3 1341 aaKnown RBP23.36■■□□□ 1.33
VARS2-212ENST00000542001 SCAF1Q9H7N4 1312 aaKnown RBP23.33■■□□□ 1.33
VARS2-212ENST00000542001 BCANQ96GW7 911 aa23.32■■□□□ 1.32
VARS2-212ENST00000542001 NEFLP07196 543 aa23.31■■□□□ 1.32
VARS2-212ENST00000542001 RB1CC1Q8TDY2 1594 aa23.25■■□□□ 1.31
VARS2-212ENST00000542001 MIER1Q8N108 512 aa23.13■■□□□ 1.29
VARS2-212ENST00000542001 TRIM52Q96A61 297 aa23.13■■□□□ 1.29
VARS2-212ENST00000542001 MROH2BQ7Z745 1585 aa23.13■■□□□ 1.29
VARS2-212ENST00000542001 CEP162Q5TB80 1403 aa23.13■■□□□ 1.29
VARS2-212ENST00000542001 SOGA1O94964 1423 aa23.1■■□□□ 1.29
VARS2-212ENST00000542001 HIRIP3Q9BW71 556 aaPredicted RBP23.1■■□□□ 1.29
VARS2-212ENST00000542001 MYT1Q01538 1121 aa23.08■■□□□ 1.29
VARS2-212ENST00000542001 ERICH6Q7L0X2 663 aa23.07■■□□□ 1.28
VARS2-212ENST00000542001 CLIP1P30622 1438 aa23■■□□□ 1.27
VARS2-212ENST00000542001 ZNF326Q5BKZ1 582 aaKnown RBP22.98■■□□□ 1.27
VARS2-212ENST00000542001 ABCC8Q09428 1581 aa22.98■■□□□ 1.27
VARS2-212ENST00000542001 FBLN2P98095 1184 aa22.97■■□□□ 1.27
VARS2-212ENST00000542001 DDX10Q13206 875 aaKnown RBP22.95■■□□□ 1.26
VARS2-212ENST00000542001 CCDC88BA6NC98 1476 aa22.93■■□□□ 1.26
VARS2-212ENST00000542001 WRNQ14191 1432 aaPredicted RBP eCLIP22.91■■□□□ 1.26
VARS2-212ENST00000542001 NACADO15069 1562 aa22.87■■□□□ 1.25
VARS2-212ENST00000542001 MYT1LQ9UL68 1186 aa22.86■■□□□ 1.25
VARS2-212ENST00000542001 CHIC2Q9UKJ5 165 aa22.85■■□□□ 1.25
VARS2-212ENST00000542001 WIZO95785 1651 aa22.84■■□□□ 1.25
VARS2-212ENST00000542001 TNIKQ9UKE5 1360 aa22.81■■□□□ 1.24
VARS2-212ENST00000542001 ANP32CO43423 234 aa22.79■■□□□ 1.24
VARS2-212ENST00000542001 GOLGA3Q08378 1498 aa22.77■■□□□ 1.24
VARS2-212ENST00000542001 ZNF777Q9ULD5 760 aaPredicted RBP22.74■■□□□ 1.23
VARS2-212ENST00000542001 BAZ1AQ9NRL2 1556 aaPredicted RBP22.74■■□□□ 1.23
VARS2-212ENST00000542001 RUSC2Q8N2Y8 1516 aa22.72■■□□□ 1.23
VARS2-212ENST00000542001 KANK4Q5T7N3 995 aaPredicted RBP22.68■■□□□ 1.22
VARS2-212ENST00000542001 SENP3-EIF4A1A0A087X0R7 540 aa22.67■■□□□ 1.22
VARS2-212ENST00000542001 SIN3AQ96ST3 1273 aa22.67■■□□□ 1.22
VARS2-212ENST00000542001 FKBP8Q14318 412 aa22.67■■□□□ 1.22
VARS2-212ENST00000542001 BAZ1BQ9UIG0 1483 aaKnown RBP22.66■■□□□ 1.22
VARS2-212ENST00000542001 EEA1Q15075 1411 aa22.58■■□□□ 1.2
VARS2-212ENST00000542001 RRP7BPQ9NSQ0 103 aa22.58■■□□□ 1.2
VARS2-212ENST00000542001 IRX6P78412 446 aaPredicted RBP22.57■■□□□ 1.2
VARS2-212ENST00000542001 CEP164Q9UPV0 1460 aa22.55■■□□□ 1.2
VARS2-212ENST00000542001 TONSLQ96HA7 1378 aa22.54■■□□□ 1.2
VARS2-212ENST00000542001 HNRNPUQ00839 825 aaKnown RBP eCLIP22.52■■□□□ 1.2
VARS2-212ENST00000542001 FAM9BQ8IZU0 186 aa22.5■■□□□ 1.19
VARS2-212ENST00000542001 SLC4A1APQ9BWU0 796 aaKnown RBP22.5■■□□□ 1.19
VARS2-212ENST00000542001 SALL2Q9Y467 1007 aaPredicted RBP22.45■■□□□ 1.18
VARS2-212ENST00000542001 MTUS2Q5JR59 1369 aa22.44■■□□□ 1.18
VARS2-212ENST00000542001 KIF27Q86VH2 1401 aa22.4■■□□□ 1.18
VARS2-212ENST00000542001 RAPGEF2Q9Y4G8 1499 aa22.34■■□□□ 1.17
VARS2-212ENST00000542001 VPS8Q8N3P4 1428 aa22.34■■□□□ 1.17
VARS2-212ENST00000542001 KDM2AQ9Y2K7 1162 aa22.32■■□□□ 1.16
VARS2-212ENST00000542001 CUX2O14529 1486 aa22.29■■□□□ 1.16
VARS2-212ENST00000542001 TOP2AP11388 1531 aaKnown RBP22.28■■□□□ 1.16
VARS2-212ENST00000542001 CCNB3Q8WWL7 1395 aa22.28■■□□□ 1.16
VARS2-212ENST00000542001 KCNH8Q96L42 1107 aa22.28■■□□□ 1.16
VARS2-212ENST00000542001 CDK11AQ9UQ88 783 aaPredicted RBP22.27■■□□□ 1.16
VARS2-212ENST00000542001 GRWD1Q9BQ67 446 aaKnown RBP eCLIP22.25■■□□□ 1.151e-7■■□□□ 14
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms