RNA–Protein interactions for RNA: ENST00000321897.9

VARS2-201, Transcript of valyl-tRNA synthetase 2, mitochondrial, humanhuman

TSL 1 (best) BASIC

Gene VARS2, Length 4,073 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS2-201ENST00000321897 NISCHQ9Y2I1 1504 aa27.78■■■□□ 2.04
VARS2-201ENST00000321897 DCAF8L2P0C7V8 631 aa27.06■■□□□ 1.92
VARS2-201ENST00000321897 SHROOM4Q9ULL8 1493 aa26.45■■□□□ 1.83
VARS2-201ENST00000321897 SUPT5HO00267 1087 aaKnown RBP26.42■■□□□ 1.82
VARS2-201ENST00000321897 EHMT2Q96KQ7 1210 aa25.45■■□□□ 1.67
VARS2-201ENST00000321897 FAM9AQ8IZU1 332 aaPredicted RBP24.85■■□□□ 1.57
VARS2-201ENST00000321897 PCGF6Q9BYE7 350 aa24.81■■□□□ 1.56
VARS2-201ENST00000321897 TTBK1Q5TCY1 1321 aaPredicted RBP24.5■■□□□ 1.51
VARS2-201ENST00000321897 LOC105371045A0A1W2PR82 267 aa24.3■■□□□ 1.48
VARS2-201ENST00000321897 PPARGC1BQ86YN6 1023 aaKnown RBP24.29■■□□□ 1.48
VARS2-201ENST00000321897 HRCP23327 699 aa24.25■■□□□ 1.47
VARS2-201ENST00000321897 CHIC1Q5VXU3 224 aa24.21■■□□□ 1.47
VARS2-201ENST00000321897 TRIM41Q8WV44 630 aa24.13■■□□□ 1.45
VARS2-201ENST00000321897 RANGAP1P46060 587 aaPredicted RBP24.01■■□□□ 1.43
VARS2-201ENST00000321897 PELP1Q8IZL8 1130 aaKnown RBP23.9■■□□□ 1.42
VARS2-201ENST00000321897 CCER1Q8TC90 406 aaPredicted RBP23.56■■□□□ 1.36
VARS2-201ENST00000321897 UBTFP17480 764 aaKnown RBP23.53■■□□□ 1.36
VARS2-201ENST00000321897 TRIM26Q12899 539 aaPredicted RBP23.48■■□□□ 1.35
VARS2-201ENST00000321897 APLP2Q06481 763 aa23.42■■□□□ 1.34
VARS2-201ENST00000321897 YTHDC1Q96MU7 727 aaKnown RBP23.41■■□□□ 1.34
VARS2-201ENST00000321897 ZEB1P37275 1124 aaPredicted RBP23.4■■□□□ 1.34
VARS2-201ENST00000321897 CENPBP07199 599 aaPredicted RBP23.38■■□□□ 1.33
VARS2-201ENST00000321897 ABCC9O60706 1549 aa23.37■■□□□ 1.33
VARS2-201ENST00000321897 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.24■■□□□ 1.31
VARS2-201ENST00000321897 PABPN1Q86U42 306 aaKnown RBP eCLIP23.22■■□□□ 1.312e-7■■■■□ 25.2
VARS2-201ENST00000321897 MYO15BQ96JP2 1530 aa23.18■■□□□ 1.3
VARS2-201ENST00000321897 ZCCHC6Q5VYS8 1495 aaKnown RBP23.15■■□□□ 1.3
VARS2-201ENST00000321897 ATP1B4Q9UN42 357 aaPredicted RBP23.15■■□□□ 1.3
VARS2-201ENST00000321897 MYT1Q01538 1121 aa23.08■■□□□ 1.29
VARS2-201ENST00000321897 HNRNPUL2Q1KMD3 747 aaKnown RBP23.06■■□□□ 1.28
VARS2-201ENST00000321897 ITGAEP38570 1179 aa22.97■■□□□ 1.27
VARS2-201ENST00000321897 GTF3C3Q9Y5Q9 886 aa22.95■■□□□ 1.26
VARS2-201ENST00000321897 SCAF1Q9H7N4 1312 aaKnown RBP22.91■■□□□ 1.26
VARS2-201ENST00000321897 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
VARS2-201ENST00000321897 DIEXFQ68CQ4 756 aaKnown RBP22.77■■□□□ 1.23
VARS2-201ENST00000321897 ACIN1Q9UKV3 1341 aaKnown RBP22.67■■□□□ 1.22
VARS2-201ENST00000321897 NEUROD1Q13562 356 aa22.6■■□□□ 1.21
VARS2-201ENST00000321897 CCDC180Q9P1Z9 1646 aa22.45■■□□□ 1.18
VARS2-201ENST00000321897 RSF1Q96T23 1441 aaPredicted RBP22.44■■□□□ 1.18
VARS2-201ENST00000321897 ERICH6Q7L0X2 663 aa22.43■■□□□ 1.18
VARS2-201ENST00000321897 CSRNP3Q8WYN3 585 aa22.4■■□□□ 1.18
VARS2-201ENST00000321897 CNGB1Q14028 1251 aaPredicted RBP22.38■■□□□ 1.17
VARS2-201ENST00000321897 DCAF1Q9Y4B6 1507 aa22.36■■□□□ 1.17
VARS2-201ENST00000321897 P3H3Q8IVL6 736 aa22.28■■□□□ 1.16
VARS2-201ENST00000321897 CECR2Q9BXF3 1484 aa22.26■■□□□ 1.15
VARS2-201ENST00000321897 BCANQ96GW7 911 aa22.26■■□□□ 1.15
VARS2-201ENST00000321897 FAM50AQ14320 339 aaKnown RBP22.21■■□□□ 1.15
VARS2-201ENST00000321897 NEFLP07196 543 aa22.2■■□□□ 1.14
VARS2-201ENST00000321897 ARID3CA6NKF2 412 aa22.1■■□□□ 1.13
VARS2-201ENST00000321897 POLR3GLQ9BT43 218 aa22.1■■□□□ 1.13
VARS2-201ENST00000321897 ZNF316A6NFI3 1004 aaPredicted RBP22.07■■□□□ 1.12
VARS2-201ENST00000321897 RB1CC1Q8TDY2 1594 aa22■■□□□ 1.11
VARS2-201ENST00000321897 MIER1Q8N108 512 aa21.87■■□□□ 1.09
VARS2-201ENST00000321897 MROH2BQ7Z745 1585 aa21.86■■□□□ 1.09
VARS2-201ENST00000321897 SOGA1O94964 1423 aa21.84■■□□□ 1.09
VARS2-201ENST00000321897 HIRIP3Q9BW71 556 aaPredicted RBP21.83■■□□□ 1.09
VARS2-201ENST00000321897 CEP162Q5TB80 1403 aa21.82■■□□□ 1.08
VARS2-201ENST00000321897 TRIM52Q96A61 297 aa21.79■■□□□ 1.08
VARS2-201ENST00000321897 ABCC8Q09428 1581 aa21.74■■□□□ 1.07
VARS2-201ENST00000321897 CLIP1P30622 1438 aa21.69■■□□□ 1.06
VARS2-201ENST00000321897 FBLN2P98095 1184 aa21.68■■□□□ 1.06
VARS2-201ENST00000321897 CCDC88BA6NC98 1476 aa21.68■■□□□ 1.06
VARS2-201ENST00000321897 ZNF326Q5BKZ1 582 aaKnown RBP21.68■■□□□ 1.06
VARS2-201ENST00000321897 DDX10Q13206 875 aaKnown RBP21.64■■□□□ 1.05
VARS2-201ENST00000321897 WRNQ14191 1432 aaPredicted RBP eCLIP21.62■■□□□ 1.05
VARS2-201ENST00000321897 FKBP8Q14318 412 aa21.6■■□□□ 1.05
VARS2-201ENST00000321897 WIZO95785 1651 aa21.6■■□□□ 1.05
VARS2-201ENST00000321897 NACADO15069 1562 aa21.57■■□□□ 1.04
VARS2-201ENST00000321897 CHIC2Q9UKJ5 165 aa21.56■■□□□ 1.04
VARS2-201ENST00000321897 MYT1LQ9UL68 1186 aa21.53■■□□□ 1.04
VARS2-201ENST00000321897 TNIKQ9UKE5 1360 aa21.5■■□□□ 1.03
VARS2-201ENST00000321897 RUSC2Q8N2Y8 1516 aa21.49■■□□□ 1.03
VARS2-201ENST00000321897 GOLGA3Q08378 1498 aa21.46■■□□□ 1.03
VARS2-201ENST00000321897 BAZ1AQ9NRL2 1556 aaPredicted RBP21.46■■□□□ 1.03
VARS2-201ENST00000321897 SENP3-EIF4A1A0A087X0R7 540 aa21.45■■□□□ 1.03
VARS2-201ENST00000321897 ZNF777Q9ULD5 760 aaPredicted RBP21.45■■□□□ 1.02
VARS2-201ENST00000321897 ANP32CO43423 234 aa21.45■■□□□ 1.02
VARS2-201ENST00000321897 ANP32EQ9BTT0 268 aa21.45■■□□□ 1.02
VARS2-201ENST00000321897 BCL11AQ9H165 835 aa21.44■■□□□ 1.02
VARS2-201ENST00000321897 KANK4Q5T7N3 995 aaPredicted RBP21.43■■□□□ 1.02
VARS2-201ENST00000321897 SIN3AQ96ST3 1273 aa21.4■■□□□ 1.02
VARS2-201ENST00000321897 BAZ1BQ9UIG0 1483 aaKnown RBP21.38■■□□□ 1.01
VARS2-201ENST00000321897 CDK11AQ9UQ88 783 aaPredicted RBP21.34■■□□□ 1.01
VARS2-201ENST00000321897 RTL5Q5HYW3 569 aaPredicted RBP21.34■■□□□ 1.01
VARS2-201ENST00000321897 SUPT16HQ9Y5B9 1047 aaKnown RBP21.34■■□□□ 1.01
VARS2-201ENST00000321897 RRP7BPQ9NSQ0 103 aa21.3■■□□□ 1
VARS2-201ENST00000321897 IRX6P78412 446 aaPredicted RBP21.3■■□□□ 1
VARS2-201ENST00000321897 EEA1Q15075 1411 aa21.25■□□□□ 0.99
VARS2-201ENST00000321897 CEP164Q9UPV0 1460 aa21.25■□□□□ 0.99
VARS2-201ENST00000321897 TONSLQ96HA7 1378 aa21.23■□□□□ 0.99
VARS2-201ENST00000321897 HNRNPUQ00839 825 aaKnown RBP eCLIP21.22■□□□□ 0.99
VARS2-201ENST00000321897 NBR1Q14596 966 aa21.22■□□□□ 0.99
VARS2-201ENST00000321897 FAM9BQ8IZU0 186 aa21.21■□□□□ 0.99
VARS2-201ENST00000321897 SLC4A1APQ9BWU0 796 aaKnown RBP21.19■□□□□ 0.98
VARS2-201ENST00000321897 SALL2Q9Y467 1007 aaPredicted RBP21.19■□□□□ 0.98
VARS2-201ENST00000321897 MTUS2Q5JR59 1369 aa21.16■□□□□ 0.98
VARS2-201ENST00000321897 CLSPNQ9HAW4 1339 aa21.13■□□□□ 0.97
VARS2-201ENST00000321897 TSHZ2Q9NRE2 1034 aa21.12■□□□□ 0.97
VARS2-201ENST00000321897 KIF27Q86VH2 1401 aa21.11■□□□□ 0.97
VARS2-201ENST00000321897 RAPGEF2Q9Y4G8 1499 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms