RNA–Protein interactions for RNA: ENST00000394803.9

UBE2D3-208, Transcript of ubiquitin conjugating enzyme E2 D3, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene UBE2D3, Length 2,227 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE2D3-208ENST00000394803 NISCHQ9Y2I1 1504 aa20.4■□□□□ 0.86
UBE2D3-208ENST00000394803 CCDC180Q9P1Z9 1646 aa17.45■□□□□ 0.38
UBE2D3-208ENST00000394803 ZCCHC6Q5VYS8 1495 aaKnown RBP17.3■□□□□ 0.36
UBE2D3-208ENST00000394803 SHROOM4Q9ULL8 1493 aa17.21■□□□□ 0.35
UBE2D3-208ENST00000394803 SUPT5HO00267 1087 aaKnown RBP17■□□□□ 0.31
UBE2D3-208ENST00000394803 DCAF1Q9Y4B6 1507 aa16.9■□□□□ 0.3
UBE2D3-208ENST00000394803 CHIC1Q5VXU3 224 aa16.69■□□□□ 0.26
UBE2D3-208ENST00000394803 DCAF8L2P0C7V8 631 aa16.6■□□□□ 0.25
UBE2D3-208ENST00000394803 MYO15BQ96JP2 1530 aa16.57■□□□□ 0.24
UBE2D3-208ENST00000394803 HRCP23327 699 aa16.51■□□□□ 0.23
UBE2D3-208ENST00000394803 ABCC9O60706 1549 aa16.39■□□□□ 0.21
UBE2D3-208ENST00000394803 PCGF6Q9BYE7 350 aa16.27■□□□□ 0.19
UBE2D3-208ENST00000394803 RSF1Q96T23 1441 aaPredicted RBP16.12■□□□□ 0.17
UBE2D3-208ENST00000394803 SCRIBQ14160 1630 aa16.12■□□□□ 0.17
UBE2D3-208ENST00000394803 TRIM26Q12899 539 aaPredicted RBP16.11■□□□□ 0.17
UBE2D3-208ENST00000394803 RB1CC1Q8TDY2 1594 aa16.11■□□□□ 0.17
UBE2D3-208ENST00000394803 NACADO15069 1562 aa16.05■□□□□ 0.16
UBE2D3-208ENST00000394803 LOC105371045A0A1W2PR82 267 aa16.04■□□□□ 0.16
UBE2D3-208ENST00000394803 ZEB1P37275 1124 aaPredicted RBP16■□□□□ 0.15
UBE2D3-208ENST00000394803 TRIM41Q8WV44 630 aa15.96■□□□□ 0.15
UBE2D3-208ENST00000394803 PPARGC1BQ86YN6 1023 aaKnown RBP15.87■□□□□ 0.13
UBE2D3-208ENST00000394803 MROH2BQ7Z745 1585 aa15.76■□□□□ 0.11
UBE2D3-208ENST00000394803 BAZ1AQ9NRL2 1556 aaPredicted RBP15.76■□□□□ 0.11
UBE2D3-208ENST00000394803 CECR2Q9BXF3 1484 aa15.73■□□□□ 0.11
UBE2D3-208ENST00000394803 WIZO95785 1651 aa15.69■□□□□ 0.1
UBE2D3-208ENST00000394803 FAM9AQ8IZU1 332 aaPredicted RBP15.64■□□□□ 0.09
UBE2D3-208ENST00000394803 EIF4G1Q04637 1599 aaKnown RBP15.63■□□□□ 0.09
UBE2D3-208ENST00000394803 TOP2AP11388 1531 aaKnown RBP15.58■□□□□ 0.09
UBE2D3-208ENST00000394803 SMARCA4P51532 1647 aa15.52■□□□□ 0.07
UBE2D3-208ENST00000394803 UNC13AQ9UPW8 1703 aa15.5■□□□□ 0.07
UBE2D3-208ENST00000394803 EEA1Q15075 1411 aa15.49■□□□□ 0.07
UBE2D3-208ENST00000394803 PELP1Q8IZL8 1130 aaKnown RBP15.48■□□□□ 0.07
UBE2D3-208ENST00000394803 WRNQ14191 1432 aaPredicted RBP eCLIP15.47■□□□□ 0.075e-6■■■■■ 29.2
UBE2D3-208ENST00000394803 SMARCA2P51531 1590 aa15.44■□□□□ 0.06
UBE2D3-208ENST00000394803 CCDC88BA6NC98 1476 aa15.41■□□□□ 0.06
UBE2D3-208ENST00000394803 PABPN1Q86U42 306 aaKnown RBP eCLIP15.4■□□□□ 0.06
UBE2D3-208ENST00000394803 TNIKQ9UKE5 1360 aa15.37■□□□□ 0.05
UBE2D3-208ENST00000394803 EHMT2Q96KQ7 1210 aa15.37■□□□□ 0.05
UBE2D3-208ENST00000394803 CCER1Q8TC90 406 aaPredicted RBP15.35■□□□□ 0.05
UBE2D3-208ENST00000394803 ABCC8Q09428 1581 aa15.35■□□□□ 0.05
UBE2D3-208ENST00000394803 CEP162Q5TB80 1403 aa15.34■□□□□ 0.05
UBE2D3-208ENST00000394803 BICRAQ9NZM4 1560 aa15.32■□□□□ 0.04
UBE2D3-208ENST00000394803 PEG3Q9GZU2 1588 aa15.29■□□□□ 0.04
UBE2D3-208ENST00000394803 GOLGA3Q08378 1498 aa15.29■□□□□ 0.04
UBE2D3-208ENST00000394803 CSRNP3Q8WYN3 585 aa15.25■□□□□ 0.03
UBE2D3-208ENST00000394803 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.24■□□□□ 0.03
UBE2D3-208ENST00000394803 SOGA1O94964 1423 aa15.22■□□□□ 0.03
UBE2D3-208ENST00000394803 KIF21BO75037 1637 aa15.2■□□□□ 0.02
UBE2D3-208ENST00000394803 CEP164Q9UPV0 1460 aa15.2■□□□□ 0.02
UBE2D3-208ENST00000394803 SCAF1Q9H7N4 1312 aaKnown RBP15.19■□□□□ 0.02
UBE2D3-208ENST00000394803 CENPBP07199 599 aaPredicted RBP15.17■□□□□ 0.02
UBE2D3-208ENST00000394803 UBTFP17480 764 aaKnown RBP15.17■□□□□ 0.02
UBE2D3-208ENST00000394803 DIEXFQ68CQ4 756 aaKnown RBP15.13■□□□□ 0.01
UBE2D3-208ENST00000394803 BAZ1BQ9UIG0 1483 aaKnown RBP15.13■□□□□ 0.01
UBE2D3-208ENST00000394803 ACIN1Q9UKV3 1341 aaKnown RBP15.13■□□□□ 0.01
UBE2D3-208ENST00000394803 RUSC2Q8N2Y8 1516 aa15.09■□□□□ 0.01
UBE2D3-208ENST00000394803 SYNJ1O43426 1573 aa15.06■□□□□ 0
UBE2D3-208ENST00000394803 CLIP1P30622 1438 aa15.04■□□□□ -0
UBE2D3-208ENST00000394803 ATAD2BQ9ULI0 1458 aa15.03■□□□□ -0
UBE2D3-208ENST00000394803 VPS8Q8N3P4 1428 aa15.03■□□□□ -0
UBE2D3-208ENST00000394803 ZNF316A6NFI3 1004 aaPredicted RBP15.02■□□□□ -0
UBE2D3-208ENST00000394803 APLP2Q06481 763 aa15□□□□□ -0.01
UBE2D3-208ENST00000394803 TOP2BQ02880 1626 aa14.98□□□□□ -0.01
UBE2D3-208ENST00000394803 TTBK1Q5TCY1 1321 aaPredicted RBP14.97□□□□□ -0.01
UBE2D3-208ENST00000394803 NEUROD1Q13562 356 aa14.96□□□□□ -0.01
UBE2D3-208ENST00000394803 BIVM-ERCC5R4GMW8 1640 aa14.95□□□□□ -0.02
UBE2D3-208ENST00000394803 ERICH3Q5RHP9 1530 aa14.95□□□□□ -0.02
UBE2D3-208ENST00000394803 CLSPNQ9HAW4 1339 aa14.92□□□□□ -0.02
UBE2D3-208ENST00000394803 RAPGEF2Q9Y4G8 1499 aa14.89□□□□□ -0.03
UBE2D3-208ENST00000394803 GTF3C3Q9Y5Q9 886 aa14.88□□□□□ -0.03
UBE2D3-208ENST00000394803 HMGXB3Q12766 1538 aa14.86□□□□□ -0.03
UBE2D3-208ENST00000394803 MYT1Q01538 1121 aa14.85□□□□□ -0.03
UBE2D3-208ENST00000394803 HNRNPUL2Q1KMD3 747 aaKnown RBP14.84□□□□□ -0.03
UBE2D3-208ENST00000394803 PRXQ9BXM0 1461 aa14.82□□□□□ -0.04
UBE2D3-208ENST00000394803 NCAPD3P42695 1498 aa14.78□□□□□ -0.04
UBE2D3-208ENST00000394803 KIF27Q86VH2 1401 aa14.77□□□□□ -0.05
UBE2D3-208ENST00000394803 CC2D2AQ9P2K1 1620 aa14.74□□□□□ -0.05
UBE2D3-208ENST00000394803 ARAP1Q96P48 1450 aa14.74□□□□□ -0.05
UBE2D3-208ENST00000394803 RRBP1Q9P2E9 1410 aaKnown RBP14.71□□□□□ -0.05
UBE2D3-208ENST00000394803 PRDM2Q13029 1718 aa14.71□□□□□ -0.05
UBE2D3-208ENST00000394803 CUX1P39880 1505 aa14.7□□□□□ -0.06
UBE2D3-208ENST00000394803 CUX2O14529 1486 aa14.7□□□□□ -0.06
UBE2D3-208ENST00000394803 DNAJC5BQ9UF47 199 aa14.69□□□□□ -0.06
UBE2D3-208ENST00000394803 MIER1Q8N108 512 aa14.69□□□□□ -0.06
UBE2D3-208ENST00000394803 DHX57Q6P158 1386 aaKnown RBP14.68□□□□□ -0.06
UBE2D3-208ENST00000394803 CFTRP13569 1480 aa14.68□□□□□ -0.06
UBE2D3-208ENST00000394803 MAP3K1Q13233 1512 aa14.66□□□□□ -0.06
UBE2D3-208ENST00000394803 YTHDC1Q96MU7 727 aaKnown RBP14.65□□□□□ -0.06
UBE2D3-208ENST00000394803 RANGAP1P46060 587 aaPredicted RBP14.61□□□□□ -0.07
UBE2D3-208ENST00000394803 CCNB3Q8WWL7 1395 aa14.61□□□□□ -0.07
UBE2D3-208ENST00000394803 ARHGAP35Q9NRY4 1499 aa14.59□□□□□ -0.07
UBE2D3-208ENST00000394803 KANK4Q5T7N3 995 aaPredicted RBP14.56□□□□□ -0.08
UBE2D3-208ENST00000394803 TIAM1Q13009 1591 aa14.55□□□□□ -0.08
UBE2D3-208ENST00000394803 FHAD1B1AJZ9 1412 aa14.53□□□□□ -0.08
UBE2D3-208ENST00000394803 IGF1RP08069 1367 aa14.48□□□□□ -0.09
UBE2D3-208ENST00000394803 CFAP43Q8NDM7 1665 aa14.48□□□□□ -0.09
UBE2D3-208ENST00000394803 CADPSQ9ULU8 1353 aa14.46□□□□□ -0.09
UBE2D3-208ENST00000394803 LRRC9Q6ZRR7 1453 aa14.46□□□□□ -0.09
UBE2D3-208ENST00000394803 CARMIL1Q5VZK9 1371 aa14.46□□□□□ -0.09
UBE2D3-208ENST00000394803 TIMELESSQ9UNS1 1208 aa14.46□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms