Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 SLC3A2-205ENST00000457660 873 ntTSL 510.76□□□□□ -0.692e-10■■□□□ 12.1
SMNDC1O75940 SLC3A2-209ENST00000537508 583 ntTSL 28.46□□□□□ -1.062e-10■■□□□ 12.1
SMNDC1O75940 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.83■□□□□ 0.63e-7■■□□□ 12.1
SMNDC1O75940 SEMA3B-208ENST00000456210 2065 ntTSL 220.4■□□□□ 0.864e-6■■□□□ 12
SMNDC1O75940 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.854e-6■■□□□ 12
SMNDC1O75940 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC18.88■□□□□ 0.614e-6■■□□□ 12
SMNDC1O75940 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.454e-6■■□□□ 12
SMNDC1O75940 SEMA3B-214ENST00000619119 3158 ntTSL 517.49■□□□□ 0.394e-6■■□□□ 12
SMNDC1O75940 SEMA3B-207ENST00000441915 2710 ntTSL 1 (best)17.14■□□□□ 0.334e-6■■□□□ 12
SMNDC1O75940 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.03■□□□□ 0.324e-6■■□□□ 12
SMNDC1O75940 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC16.43■□□□□ 0.224e-6■■□□□ 12
SMNDC1O75940 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.144e-6■■□□□ 12
SMNDC1O75940 RPSA-203ENST00000444512 701 ntTSL 216.92■□□□□ 0.31e-323■■□□□ 12
SMNDC1O75940 RPSA-206ENST00000477325 596 ntTSL 28.47□□□□□ -1.051e-323■■□□□ 12
SMNDC1O75940 SNORA6-201ENST00000384033 151 ntBASIC2.35□□□□□ -2.031e-323■■□□□ 12
SMNDC1O75940 SGSM3-210ENST00000480830 997 ntTSL 516.07■□□□□ 0.161e-6■■□□□ 12
SMNDC1O75940 SGSM3-212ENST00000481408 951 ntTSL 514.77□□□□□ -0.051e-6■■□□□ 12
SMNDC1O75940 AP4B1-205ENST00000369571 980 ntTSL 318.23■□□□□ 0.512e-8■■□□□ 12
SMNDC1O75940 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.272e-8■■□□□ 12
SMNDC1O75940 AP4B1-212ENST00000484201 981 ntTSL 516.06■□□□□ 0.162e-8■■□□□ 12
SMNDC1O75940 AP4B1-201ENST00000256658 2742 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.032e-8■■□□□ 12
SMNDC1O75940 AP4B1-202ENST00000369564 1225 ntTSL 514.9□□□□□ -0.022e-8■■□□□ 12
SMNDC1O75940 AP4B1-206ENST00000432415 681 ntTSL 314.67□□□□□ -0.062e-8■■□□□ 12
SMNDC1O75940 AP4B1-214ENST00000489499 1044 ntTSL 210.51□□□□□ -0.732e-8■■□□□ 12
SMNDC1O75940 AP4B1-203ENST00000369567 2144 ntTSL 2 BASIC10.47□□□□□ -0.732e-8■■□□□ 12
SMNDC1O75940 AP4B1-213ENST00000489092 955 ntTSL 38.33□□□□□ -1.082e-8■■□□□ 12
SMNDC1O75940 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.311e-6■■□□□ 12
SMNDC1O75940 SUN1-222ENST00000457861 2975 ntTSL 217.08■□□□□ 0.321e-6■■□□□ 12
SMNDC1O75940 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.111e-6■■□□□ 12
SMNDC1O75940 TIMM23B-204ENST00000483296 1156 ntTSL 214.93□□□□□ -0.021e-15■■□□□ 12
SMNDC1O75940 TIMM23B-203ENST00000478381 2623 ntTSL 211.99□□□□□ -0.491e-15■■□□□ 12
SMNDC1O75940 TIMM23B-201ENST00000374098 1142 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.681e-15■■□□□ 12
SMNDC1O75940 TIMM23B-202ENST00000451577 1152 ntTSL 2 BASIC10.75□□□□□ -0.691e-15■■□□□ 12
SMNDC1O75940 SNORA74C-2-201ENST00000411179 201 ntBASIC4.14□□□□□ -1.751e-15■■□□□ 12
SMNDC1O75940 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.161e-8■■□□□ 12
SMNDC1O75940 MSH5-206ENST00000423982 2706 ntTSL 515.26■□□□□ 0.031e-8■■□□□ 12
SMNDC1O75940 MSH5-201ENST00000375703 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.011e-8■■□□□ 12
SMNDC1O75940 MSH5-202ENST00000375740 2669 ntTSL 1 (best) BASIC14.73□□□□□ -0.051e-8■■□□□ 12
SMNDC1O75940 MSH5-204ENST00000375755 3094 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.171e-8■■□□□ 12
SMNDC1O75940 MSH5-SAPCD1-207ENST00000493662 3991 ntAPPRIS P5 TSL 1 (best) BASIC11.23□□□□□ -0.611e-8■■□□□ 12
SMNDC1O75940 ZNF692-215ENST00000483791 681 ntTSL 316.47■□□□□ 0.239e-8■■□□□ 12
SMNDC1O75940 ZNF692-230ENST00000534660 552 ntTSL 312.77□□□□□ -0.379e-8■■□□□ 12
SMNDC1O75940 HNRNPH1-243ENST00000522958 580 ntTSL 212.08□□□□□ -0.484e-37■■□□□ 11.9
SMNDC1O75940 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC21.05■□□□□ 0.962e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-213ENST00000475268 2183 ntTSL 1 (best)17.49■□□□□ 0.392e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-205ENST00000565110 575 ntTSL 517.33■□□□□ 0.362e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-208ENST00000566401 522 ntTSL 317.32■□□□□ 0.362e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC17.32■□□□□ 0.362e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-206ENST00000565479 865 ntTSL 517.12■□□□□ 0.332e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.292e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-210ENST00000568674 371 ntTSL 216.79■□□□□ 0.282e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.252e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC16.6■□□□□ 0.252e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-209ENST00000441368 691 ntTSL 516.58■□□□□ 0.242e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.182e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.12e-8■■□□□ 11.9
SMNDC1O75940 SLC2A4RG-208ENST00000496425 502 ntTSL 215.62■□□□□ 0.092e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-214ENST00000495368 2311 ntTSL 215.16■□□□□ 0.022e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.1■□□□□ 0.012e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-212ENST00000472221 850 ntTSL 215.08■□□□□ 02e-8■■□□□ 11.9
SMNDC1O75940 YPEL3-211ENST00000568681 1739 ntTSL 213.94□□□□□ -0.182e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-208ENST00000419021 778 ntTSL 58.86□□□□□ -0.992e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-204ENST00000379020 2252 ntTSL 5 BASIC8.71□□□□□ -1.012e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-211ENST00000466451 427 ntTSL 27.07□□□□□ -1.282e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.81□□□□□ -1.322e-8■■□□□ 11.9
SMNDC1O75940 SEC61A2-207ENST00000418772 434 ntTSL 56.79□□□□□ -1.322e-8■■□□□ 11.9
SMNDC1O75940 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.1■□□□□ 0.651e-8■■□□□ 11.9
SMNDC1O75940 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.01■□□□□ 0.631e-8■■□□□ 11.9
SMNDC1O75940 TPM1-228ENST00000560975 2855 ntTSL 517.9■□□□□ 0.461e-8■■□□□ 11.9
SMNDC1O75940 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.78■□□□□ 0.281e-8■■□□□ 11.9
SMNDC1O75940 TPM1-224ENST00000560615 570 ntTSL 316.77■□□□□ 0.281e-8■■□□□ 11.9
SMNDC1O75940 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.01■□□□□ 0.151e-8■■□□□ 11.9
SMNDC1O75940 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.01■□□□□ 0.151e-8■■□□□ 11.9
SMNDC1O75940 TPM1-214ENST00000558544 1399 ntTSL 515.51■□□□□ 0.071e-8■■□□□ 11.9
SMNDC1O75940 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC15.5■□□□□ 0.071e-8■■□□□ 11.9
SMNDC1O75940 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.1■□□□□ 0.011e-8■■□□□ 11.9
SMNDC1O75940 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.1■□□□□ 0.011e-8■■□□□ 11.9
SMNDC1O75940 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.21e-8■■□□□ 11.9
SMNDC1O75940 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC13.53□□□□□ -0.241e-8■■□□□ 11.9
SMNDC1O75940 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC12.75□□□□□ -0.371e-8■■□□□ 11.9
SMNDC1O75940 TPM1-223ENST00000560445 485 ntTSL 3 BASIC12.72□□□□□ -0.371e-8■■□□□ 11.9
SMNDC1O75940 TPM1-230ENST00000561266 671 ntTSL 312.38□□□□□ -0.431e-8■■□□□ 11.9
SMNDC1O75940 SRSF1-202ENST00000578430 689 ntTSL 211.95□□□□□ -0.51e-8■■□□□ 11.9
SMNDC1O75940 TPM1-220ENST00000559556 977 ntAPPRIS ALT1 TSL 2 BASIC11.82□□□□□ -0.521e-8■■□□□ 11.9
SMNDC1O75940 TPM1-209ENST00000558072 525 ntTSL 210.93□□□□□ -0.661e-8■■□□□ 11.9
SMNDC1O75940 TPM1-210ENST00000558264 2687 ntTSL 210.42□□□□□ -0.741e-8■■□□□ 11.9
SMNDC1O75940 TPM1-212ENST00000558347 1525 ntTSL 510.12□□□□□ -0.791e-8■■□□□ 11.9
SMNDC1O75940 TPM1-227ENST00000560970 1039 ntTSL 1 (best)9.66□□□□□ -0.861e-8■■□□□ 11.9
SMNDC1O75940 TPM1-229ENST00000561242 673 ntTSL 29.66□□□□□ -0.861e-8■■□□□ 11.9
SMNDC1O75940 TPM1-217ENST00000559108 437 ntTSL 29.64□□□□□ -0.871e-8■■□□□ 11.9
SMNDC1O75940 TPM1-221ENST00000559831 573 ntTSL 59.27□□□□□ -0.931e-8■■□□□ 11.9
SMNDC1O75940 ITPA-205ENST00000460676 488 ntTSL 38.58□□□□□ -1.041e-8■■□□□ 11.9
SMNDC1O75940 TPM1-231ENST00000561395 673 ntTSL 56.88□□□□□ -1.311e-8■■□□□ 11.9
SMNDC1O75940 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.811e-5■■□□□ 11.9
SMNDC1O75940 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.981e-5■■□□□ 11.9
SMNDC1O75940 RNASEH2A-203ENST00000590279 696 ntTSL 320.81■□□□□ 0.921e-5■■□□□ 11.9
SMNDC1O75940 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.791e-5■■□□□ 11.9
SMNDC1O75940 SYNGR2-204ENST00000589168 2125 ntTSL 219.58■□□□□ 0.721e-5■■□□□ 11.9
SMNDC1O75940 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.31■□□□□ 0.681e-5■■□□□ 11.9
SMNDC1O75940 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.661e-5■■□□□ 11.9
Retrieved 100 of 11,362 protein–RNA pairs in 55.8 ms