RNA–Protein interactions for RNA: ENST00000558264.5

TPM1-210, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 2,687 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-210ENST00000558264 NISCHQ9Y2I1 1504 aa22.71■■□□□ 1.23
TPM1-210ENST00000558264 CCDC180Q9P1Z9 1646 aa19.4■□□□□ 0.7
TPM1-210ENST00000558264 SHROOM4Q9ULL8 1493 aa19.29■□□□□ 0.68
TPM1-210ENST00000558264 ZCCHC6Q5VYS8 1495 aaKnown RBP19.13■□□□□ 0.65
TPM1-210ENST00000558264 DCAF8L2P0C7V8 631 aa19.09■□□□□ 0.65
TPM1-210ENST00000558264 SUPT5HO00267 1087 aaKnown RBP18.74■□□□□ 0.59
TPM1-210ENST00000558264 DCAF1Q9Y4B6 1507 aa18.55■□□□□ 0.56
TPM1-210ENST00000558264 ABCC9O60706 1549 aa18.4■□□□□ 0.54
TPM1-210ENST00000558264 SCRIBQ14160 1630 aa18.26■□□□□ 0.51
TPM1-210ENST00000558264 MYO15BQ96JP2 1530 aa18.12■□□□□ 0.49
TPM1-210ENST00000558264 NACADO15069 1562 aa18.03■□□□□ 0.48
TPM1-210ENST00000558264 CHIC1Q5VXU3 224 aa17.98■□□□□ 0.47
TPM1-210ENST00000558264 RSF1Q96T23 1441 aaPredicted RBP17.87■□□□□ 0.45
TPM1-210ENST00000558264 RB1CC1Q8TDY2 1594 aa17.83■□□□□ 0.45
TPM1-210ENST00000558264 CECR2Q9BXF3 1484 aa17.8■□□□□ 0.44
TPM1-210ENST00000558264 MROH2BQ7Z745 1585 aa17.68■□□□□ 0.42
TPM1-210ENST00000558264 UNC13AQ9UPW8 1703 aa17.57■□□□□ 0.4
TPM1-210ENST00000558264 WIZO95785 1651 aa17.57■□□□□ 0.4
TPM1-210ENST00000558264 PABPN1Q86U42 306 aaKnown RBP eCLIP17.57■□□□□ 0.41e-13■■■□□ 18.2
TPM1-210ENST00000558264 LOC105371045A0A1W2PR82 267 aa17.5■□□□□ 0.39
TPM1-210ENST00000558264 BAZ1AQ9NRL2 1556 aaPredicted RBP17.45■□□□□ 0.38
TPM1-210ENST00000558264 TRIM41Q8WV44 630 aa17.42■□□□□ 0.38
TPM1-210ENST00000558264 BICRAQ9NZM4 1560 aa17.38■□□□□ 0.37
TPM1-210ENST00000558264 SMARCA4P51532 1647 aa17.36■□□□□ 0.37
TPM1-210ENST00000558264 FAM9AQ8IZU1 332 aaPredicted RBP17.35■□□□□ 0.37
TPM1-210ENST00000558264 EHMT2Q96KQ7 1210 aa17.29■□□□□ 0.36
TPM1-210ENST00000558264 TOP2AP11388 1531 aaKnown RBP17.24■□□□□ 0.35
TPM1-210ENST00000558264 CCDC88BA6NC98 1476 aa17.2■□□□□ 0.34
TPM1-210ENST00000558264 SMARCA2P51531 1590 aa17.15■□□□□ 0.34
TPM1-210ENST00000558264 PCGF6Q9BYE7 350 aa17.14■□□□□ 0.33
TPM1-210ENST00000558264 EIF4G1Q04637 1599 aaKnown RBP17.13■□□□□ 0.33
TPM1-210ENST00000558264 ABCC8Q09428 1581 aa17.1■□□□□ 0.33
TPM1-210ENST00000558264 ATAD2BQ9ULI0 1458 aa17.01■□□□□ 0.31
TPM1-210ENST00000558264 PEG3Q9GZU2 1588 aa16.99■□□□□ 0.31
TPM1-210ENST00000558264 BAZ1BQ9UIG0 1483 aaKnown RBP16.96■□□□□ 0.31
TPM1-210ENST00000558264 SOGA1O94964 1423 aa16.86■□□□□ 0.29
TPM1-210ENST00000558264 HRCP23327 699 aa16.83■□□□□ 0.29
TPM1-210ENST00000558264 RUSC2Q8N2Y8 1516 aa16.81■□□□□ 0.28
TPM1-210ENST00000558264 TRIM26Q12899 539 aaPredicted RBP16.81■□□□□ 0.28
TPM1-210ENST00000558264 WRNQ14191 1432 aaPredicted RBP eCLIP16.8■□□□□ 0.28
TPM1-210ENST00000558264 PPARGC1BQ86YN6 1023 aaKnown RBP16.8■□□□□ 0.28
TPM1-210ENST00000558264 SYNJ1O43426 1573 aa16.74■□□□□ 0.27
TPM1-210ENST00000558264 CSRNP3Q8WYN3 585 aa16.7■□□□□ 0.26
TPM1-210ENST00000558264 NCAPD3P42695 1498 aa16.7■□□□□ 0.26
TPM1-210ENST00000558264 UBTFP17480 764 aaKnown RBP16.66■□□□□ 0.26
TPM1-210ENST00000558264 HMGXB3Q12766 1538 aa16.66■□□□□ 0.26
TPM1-210ENST00000558264 TTBK1Q5TCY1 1321 aaPredicted RBP16.64■□□□□ 0.25
TPM1-210ENST00000558264 EEA1Q15075 1411 aa16.6■□□□□ 0.25
TPM1-210ENST00000558264 CEP162Q5TB80 1403 aa16.6■□□□□ 0.25
TPM1-210ENST00000558264 TNIKQ9UKE5 1360 aa16.55■□□□□ 0.24
TPM1-210ENST00000558264 GOLGA3Q08378 1498 aa16.53■□□□□ 0.24
TPM1-210ENST00000558264 RANGAP1P46060 587 aaPredicted RBP16.53■□□□□ 0.24
TPM1-210ENST00000558264 TOP2BQ02880 1626 aa16.51■□□□□ 0.23
TPM1-210ENST00000558264 CC2D2AQ9P2K1 1620 aa16.51■□□□□ 0.23
TPM1-210ENST00000558264 CFTRP13569 1480 aa16.49■□□□□ 0.23
TPM1-210ENST00000558264 CUX1P39880 1505 aa16.47■□□□□ 0.23
TPM1-210ENST00000558264 CEP164Q9UPV0 1460 aa16.47■□□□□ 0.23
TPM1-210ENST00000558264 RAPGEF2Q9Y4G8 1499 aa16.45■□□□□ 0.22
TPM1-210ENST00000558264 BIVM-ERCC5R4GMW8 1640 aa16.44■□□□□ 0.22
TPM1-210ENST00000558264 KIF21BO75037 1637 aa16.41■□□□□ 0.22
TPM1-210ENST00000558264 CADPSQ9ULU8 1353 aa16.39■□□□□ 0.21
TPM1-210ENST00000558264 CLIP1P30622 1438 aa16.36■□□□□ 0.21
TPM1-210ENST00000558264 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
TPM1-210ENST00000558264 DNAJC5BQ9UF47 199 aa16.31■□□□□ 0.2
TPM1-210ENST00000558264 NESP48681 1621 aa16.3■□□□□ 0.2
TPM1-210ENST00000558264 KIF27Q86VH2 1401 aa16.3■□□□□ 0.2
TPM1-210ENST00000558264 PRDM2Q13029 1718 aa16.29■□□□□ 0.2
TPM1-210ENST00000558264 PRXQ9BXM0 1461 aa16.27■□□□□ 0.2
TPM1-210ENST00000558264 CUX2O14529 1486 aa16.25■□□□□ 0.19
TPM1-210ENST00000558264 FANCD2Q9BXW9 1451 aa16.25■□□□□ 0.19
TPM1-210ENST00000558264 FGD5Q6ZNL6 1462 aa16.24■□□□□ 0.19
TPM1-210ENST00000558264 VPS8Q8N3P4 1428 aa16.22■□□□□ 0.19
TPM1-210ENST00000558264 ZEB1P37275 1124 aaPredicted RBP16.22■□□□□ 0.19
TPM1-210ENST00000558264 CCER1Q8TC90 406 aaPredicted RBP16.21■□□□□ 0.18
TPM1-210ENST00000558264 ERICH3Q5RHP9 1530 aa16.2■□□□□ 0.18
TPM1-210ENST00000558264 APLP2Q06481 763 aa16.18■□□□□ 0.18
TPM1-210ENST00000558264 IGF1RP08069 1367 aa16.16■□□□□ 0.18
TPM1-210ENST00000558264 RAD54L2Q9Y4B4 1467 aa16.15■□□□□ 0.18
TPM1-210ENST00000558264 ARAP1Q96P48 1450 aa16.13■□□□□ 0.17
TPM1-210ENST00000558264 HNRNPUL2Q1KMD3 747 aaKnown RBP16.13■□□□□ 0.17
TPM1-210ENST00000558264 TOPBP1Q92547 1522 aa16.1■□□□□ 0.17
TPM1-210ENST00000558264 CARMIL1Q5VZK9 1371 aa16.1■□□□□ 0.17
TPM1-210ENST00000558264 POLA1P09884 1462 aaPredicted RBP16.08■□□□□ 0.17
TPM1-210ENST00000558264 DNMBPQ6XZF7 1577 aa16.08■□□□□ 0.17
TPM1-210ENST00000558264 KANK4Q5T7N3 995 aaPredicted RBP16.05■□□□□ 0.16
TPM1-210ENST00000558264 ARHGAP35Q9NRY4 1499 aa16.05■□□□□ 0.16
TPM1-210ENST00000558264 URB2Q14146 1524 aaKnown RBP16.04■□□□□ 0.16
TPM1-210ENST00000558264 LAMC3Q9Y6N6 1575 aa16.04■□□□□ 0.16
TPM1-210ENST00000558264 P3H3Q8IVL6 736 aa16.02■□□□□ 0.16
TPM1-210ENST00000558264 ABCA10Q8WWZ4 1543 aa15.99■□□□□ 0.15
TPM1-210ENST00000558264 TDRD9Q8NDG6 1382 aaKnown RBP15.99■□□□□ 0.15
TPM1-210ENST00000558264 PDS5BQ9NTI5 1447 aa15.97■□□□□ 0.15
TPM1-210ENST00000558264 KIF21AQ7Z4S6 1674 aa15.96■□□□□ 0.15
TPM1-210ENST00000558264 ATP1B4Q9UN42 357 aaPredicted RBP15.93■□□□□ 0.14
TPM1-210ENST00000558264 FHOD3Q2V2M9 1422 aa15.87■□□□□ 0.13
TPM1-210ENST00000558264 ITGAEP38570 1179 aa15.87■□□□□ 0.13
TPM1-210ENST00000558264 WDR97A6NE52 1622 aa15.86■□□□□ 0.13
TPM1-210ENST00000558264 GAPVD1Q14C86 1478 aa15.85■□□□□ 0.13
TPM1-210ENST00000558264 CUL7Q14999 1698 aa15.83■□□□□ 0.12
TPM1-210ENST00000558264 ABCA5Q8WWZ7 1642 aa15.82■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms