RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 NISCHQ9Y2I1 1504 aa39.16■■■■□ 3.86
SEMA3B-209ENST00000456560 CCDC180Q9P1Z9 1646 aa33.55■■■□□ 2.96
SEMA3B-209ENST00000456560 ZCCHC6Q5VYS8 1495 aaKnown RBP33.08■■■□□ 2.89
SEMA3B-209ENST00000456560 SHROOM4Q9ULL8 1493 aa32.82■■■□□ 2.84
SEMA3B-209ENST00000456560 DCAF1Q9Y4B6 1507 aa32.29■■■□□ 2.76
SEMA3B-209ENST00000456560 ABCC9O60706 1549 aa32.22■■■□□ 2.75
SEMA3B-209ENST00000456560 DCAF8L2P0C7V8 631 aa32.16■■■□□ 2.74
SEMA3B-209ENST00000456560 SUPT5HO00267 1087 aaKnown RBP32.07■■■□□ 2.72
SEMA3B-209ENST00000456560 MYO15BQ96JP2 1530 aa31.5■■■□□ 2.63
SEMA3B-209ENST00000456560 NACADO15069 1562 aa31.3■■■□□ 2.6
SEMA3B-209ENST00000456560 CHIC1Q5VXU3 224 aa31.21■■■□□ 2.59
SEMA3B-209ENST00000456560 SCRIBQ14160 1630 aa31.16■■■□□ 2.58
SEMA3B-209ENST00000456560 RB1CC1Q8TDY2 1594 aa31.14■■■□□ 2.58
SEMA3B-209ENST00000456560 RSF1Q96T23 1441 aaPredicted RBP30.82■■■□□ 2.53
SEMA3B-209ENST00000456560 UNC13AQ9UPW8 1703 aa30.56■■■□□ 2.48
SEMA3B-209ENST00000456560 CECR2Q9BXF3 1484 aa30.46■■■□□ 2.47
SEMA3B-209ENST00000456560 PABPN1Q86U42 306 aaKnown RBP eCLIP30.41■■■□□ 2.463e-8■■■■□ 20.2
SEMA3B-209ENST00000456560 MROH2BQ7Z745 1585 aa30.36■■■□□ 2.45
SEMA3B-209ENST00000456560 BICRAQ9NZM4 1560 aa30.28■■■□□ 2.44
SEMA3B-209ENST00000456560 WIZO95785 1651 aa30.17■■■□□ 2.42
SEMA3B-209ENST00000456560 LOC105371045A0A1W2PR82 267 aa30.13■■■□□ 2.41
SEMA3B-209ENST00000456560 BAZ1AQ9NRL2 1556 aaPredicted RBP30.11■■■□□ 2.41
SEMA3B-209ENST00000456560 TRIM41Q8WV44 630 aa30■■■□□ 2.39
SEMA3B-209ENST00000456560 SMARCA4P51532 1647 aa29.88■■■□□ 2.37
SEMA3B-209ENST00000456560 TOP2AP11388 1531 aaKnown RBP29.79■■■□□ 2.36
SEMA3B-209ENST00000456560 PCGF6Q9BYE7 350 aa29.77■■■□□ 2.36
SEMA3B-209ENST00000456560 EIF4G1Q04637 1599 aaKnown RBP29.76■■■□□ 2.35
SEMA3B-209ENST00000456560 HRCP23327 699 aa29.7■■■□□ 2.35
SEMA3B-209ENST00000456560 SMARCA2P51531 1590 aa29.59■■■□□ 2.33
SEMA3B-209ENST00000456560 CCDC88BA6NC98 1476 aa29.59■■■□□ 2.33
SEMA3B-209ENST00000456560 FAM9AQ8IZU1 332 aaPredicted RBP29.59■■■□□ 2.33
SEMA3B-209ENST00000456560 TRIM26Q12899 539 aaPredicted RBP29.43■■■□□ 2.3
SEMA3B-209ENST00000456560 PEG3Q9GZU2 1588 aa29.43■■■□□ 2.3
SEMA3B-209ENST00000456560 ABCC8Q09428 1581 aa29.32■■■□□ 2.28
SEMA3B-209ENST00000456560 ATAD2BQ9ULI0 1458 aa29.2■■■□□ 2.26
SEMA3B-209ENST00000456560 EHMT2Q96KQ7 1210 aa29.2■■■□□ 2.26
SEMA3B-209ENST00000456560 CC2D2AQ9P2K1 1620 aa29.06■■■□□ 2.24
SEMA3B-209ENST00000456560 BAZ1BQ9UIG0 1483 aaKnown RBP29.03■■■□□ 2.24
SEMA3B-209ENST00000456560 SOGA1O94964 1423 aa28.99■■■□□ 2.23
SEMA3B-209ENST00000456560 EEA1Q15075 1411 aa28.97■■■□□ 2.23
SEMA3B-209ENST00000456560 PPARGC1BQ86YN6 1023 aaKnown RBP28.96■■■□□ 2.23
SEMA3B-209ENST00000456560 WRNQ14191 1432 aaPredicted RBP eCLIP28.94■■■□□ 2.22
SEMA3B-209ENST00000456560 NCAPD3P42695 1498 aa28.94■■■□□ 2.22
SEMA3B-209ENST00000456560 RUSC2Q8N2Y8 1516 aa28.87■■■□□ 2.21
SEMA3B-209ENST00000456560 CSRNP3Q8WYN3 585 aa28.84■■■□□ 2.21
SEMA3B-209ENST00000456560 HMGXB3Q12766 1538 aa28.84■■■□□ 2.21
SEMA3B-209ENST00000456560 SYNJ1O43426 1573 aa28.82■■■□□ 2.2
SEMA3B-209ENST00000456560 TNIKQ9UKE5 1360 aa28.81■■■□□ 2.2
SEMA3B-209ENST00000456560 DNAJC5BQ9UF47 199 aa28.76■■■□□ 2.19
SEMA3B-209ENST00000456560 CEP162Q5TB80 1403 aa28.75■■■□□ 2.19
SEMA3B-209ENST00000456560 ZEB1P37275 1124 aaPredicted RBP28.71■■■□□ 2.19
SEMA3B-209ENST00000456560 GOLGA3Q08378 1498 aa28.67■■■□□ 2.18
SEMA3B-209ENST00000456560 KIF21BO75037 1637 aa28.58■■■□□ 2.17
SEMA3B-209ENST00000456560 UBTFP17480 764 aaKnown RBP28.57■■■□□ 2.16
SEMA3B-209ENST00000456560 CEP164Q9UPV0 1460 aa28.56■■■□□ 2.16
SEMA3B-209ENST00000456560 TOP2BQ02880 1626 aa28.56■■■□□ 2.16
SEMA3B-209ENST00000456560 BIVM-ERCC5R4GMW8 1640 aa28.5■■■□□ 2.15
SEMA3B-209ENST00000456560 CFTRP13569 1480 aa28.37■■■□□ 2.13
SEMA3B-209ENST00000456560 RAPGEF2Q9Y4G8 1499 aa28.33■■■□□ 2.13
SEMA3B-209ENST00000456560 CUX1P39880 1505 aa28.3■■■□□ 2.12
SEMA3B-209ENST00000456560 CLIP1P30622 1438 aa28.29■■■□□ 2.12
SEMA3B-209ENST00000456560 CADPSQ9ULU8 1353 aa28.23■■■□□ 2.11
SEMA3B-209ENST00000456560 NESP48681 1621 aa28.2■■■□□ 2.11
SEMA3B-209ENST00000456560 TTBK1Q5TCY1 1321 aaPredicted RBP28.2■■■□□ 2.1
SEMA3B-209ENST00000456560 PRDM2Q13029 1718 aa28.2■■■□□ 2.1
SEMA3B-209ENST00000456560 PRXQ9BXM0 1461 aa28.19■■■□□ 2.1
SEMA3B-209ENST00000456560 ERICH3Q5RHP9 1530 aa28.19■■■□□ 2.1
SEMA3B-209ENST00000456560 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.18■■■□□ 2.1
SEMA3B-209ENST00000456560 VPS8Q8N3P4 1428 aa28.17■■■□□ 2.1
SEMA3B-209ENST00000456560 CCER1Q8TC90 406 aaPredicted RBP28.12■■■□□ 2.09
SEMA3B-209ENST00000456560 KIF27Q86VH2 1401 aa28.09■■■□□ 2.09
SEMA3B-209ENST00000456560 LAMC3Q9Y6N6 1575 aa27.98■■■□□ 2.07
SEMA3B-209ENST00000456560 FANCD2Q9BXW9 1451 aa27.95■■■□□ 2.06
SEMA3B-209ENST00000456560 ARAP1Q96P48 1450 aa27.91■■■□□ 2.06
SEMA3B-209ENST00000456560 RANGAP1P46060 587 aaPredicted RBP27.91■■■□□ 2.06
SEMA3B-209ENST00000456560 APLP2Q06481 763 aa27.89■■■□□ 2.06
SEMA3B-209ENST00000456560 CUX2O14529 1486 aa27.84■■■□□ 2.05
SEMA3B-209ENST00000456560 FGD5Q6ZNL6 1462 aa27.82■■■□□ 2.04
SEMA3B-209ENST00000456560 IGF1RP08069 1367 aa27.82■■■□□ 2.04
SEMA3B-209ENST00000456560 PDS5BQ9NTI5 1447 aa27.81■■■□□ 2.04
SEMA3B-209ENST00000456560 KIF21AQ7Z4S6 1674 aa27.77■■■□□ 2.04
SEMA3B-209ENST00000456560 ARHGAP35Q9NRY4 1499 aa27.72■■■□□ 2.03
SEMA3B-209ENST00000456560 HNRNPUL2Q1KMD3 747 aaKnown RBP27.72■■■□□ 2.03
SEMA3B-209ENST00000456560 CARMIL1Q5VZK9 1371 aa27.66■■■□□ 2.02
SEMA3B-209ENST00000456560 DNMBPQ6XZF7 1577 aa27.66■■■□□ 2.02
SEMA3B-209ENST00000456560 URB2Q14146 1524 aaKnown RBP27.63■■■□□ 2.01
SEMA3B-209ENST00000456560 KANK4Q5T7N3 995 aaPredicted RBP27.61■■■□□ 2.01
SEMA3B-209ENST00000456560 TOPBP1Q92547 1522 aa27.6■■■□□ 2.01
SEMA3B-209ENST00000456560 ERCC6Q03468 1493 aa27.6■■■□□ 2.01
SEMA3B-209ENST00000456560 ABCA10Q8WWZ4 1543 aa27.56■■■□□ 2
SEMA3B-209ENST00000456560 SCAF1Q9H7N4 1312 aaKnown RBP27.55■■■□□ 2
SEMA3B-209ENST00000456560 POLA1P09884 1462 aaPredicted RBP27.54■■■□□ 2
SEMA3B-209ENST00000456560 PELP1Q8IZL8 1130 aaKnown RBP27.54■■■□□ 2
SEMA3B-209ENST00000456560 RAD54L2Q9Y4B4 1467 aa27.53■■■□□ 2
SEMA3B-209ENST00000456560 RRBP1Q9P2E9 1410 aaKnown RBP27.51■■□□□ 1.99
SEMA3B-209ENST00000456560 MRC2Q9UBG0 1479 aa27.49■■□□□ 1.99
SEMA3B-209ENST00000456560 MAP3K1Q13233 1512 aa27.45■■□□□ 1.99
SEMA3B-209ENST00000456560 DIEXFQ68CQ4 756 aaKnown RBP27.42■■□□□ 1.98
SEMA3B-209ENST00000456560 TIAM1Q13009 1591 aa27.39■■□□□ 1.97
SEMA3B-209ENST00000456560 CUL7Q14999 1698 aa27.38■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms