RNA–Protein interactions for RNA: ENST00000558072.5

TPM1-209, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-209ENST00000558072 NISCHQ9Y2I1 1504 aa29.09■■■□□ 2.25
TPM1-209ENST00000558072 CCDC180Q9P1Z9 1646 aa25.67■■□□□ 1.7
TPM1-209ENST00000558072 ABCC9O60706 1549 aa24.88■■□□□ 1.57
TPM1-209ENST00000558072 ZCCHC6Q5VYS8 1495 aaKnown RBP24.35■■□□□ 1.49
TPM1-209ENST00000558072 DCAF8L2P0C7V8 631 aa24.19■■□□□ 1.46
TPM1-209ENST00000558072 NACADO15069 1562 aa23.98■■□□□ 1.43
TPM1-209ENST00000558072 DCAF1Q9Y4B6 1507 aa23.97■■□□□ 1.43
TPM1-209ENST00000558072 RB1CC1Q8TDY2 1594 aa23.95■■□□□ 1.43
TPM1-209ENST00000558072 MYO15BQ96JP2 1530 aa23.87■■□□□ 1.41
TPM1-209ENST00000558072 SCRIBQ14160 1630 aa23.64■■□□□ 1.38
TPM1-209ENST00000558072 UNC13AQ9UPW8 1703 aa23.62■■□□□ 1.37
TPM1-209ENST00000558072 SHROOM4Q9ULL8 1493 aa23.43■■□□□ 1.34
TPM1-209ENST00000558072 BICRAQ9NZM4 1560 aa23.35■■□□□ 1.33
TPM1-209ENST00000558072 PABPN1Q86U42 306 aaKnown RBP eCLIP23.31■■□□□ 1.32
TPM1-209ENST00000558072 CECR2Q9BXF3 1484 aa22.73■■□□□ 1.23
TPM1-209ENST00000558072 EIF4G1Q04637 1599 aaKnown RBP22.64■■□□□ 1.22
TPM1-209ENST00000558072 SMARCA4P51532 1647 aa22.55■■□□□ 1.2
TPM1-209ENST00000558072 MROH2BQ7Z745 1585 aa22.53■■□□□ 1.2
TPM1-209ENST00000558072 BAZ1AQ9NRL2 1556 aaPredicted RBP22.49■■□□□ 1.19
TPM1-209ENST00000558072 CC2D2AQ9P2K1 1620 aa22.49■■□□□ 1.19
TPM1-209ENST00000558072 DNAJC5BQ9UF47 199 aa22.47■■□□□ 1.19
TPM1-209ENST00000558072 WIZO95785 1651 aa22.35■■□□□ 1.17
TPM1-209ENST00000558072 RSF1Q96T23 1441 aaPredicted RBP22.33■■□□□ 1.17
TPM1-209ENST00000558072 ATAD2BQ9ULI0 1458 aa22.28■■□□□ 1.16
TPM1-209ENST00000558072 PEG3Q9GZU2 1588 aa22.21■■□□□ 1.15
TPM1-209ENST00000558072 SMARCA2P51531 1590 aa22.21■■□□□ 1.15
TPM1-209ENST00000558072 SUPT5HO00267 1087 aaKnown RBP22.13■■□□□ 1.13
TPM1-209ENST00000558072 BAZ1BQ9UIG0 1483 aaKnown RBP22.12■■□□□ 1.13
TPM1-209ENST00000558072 NCAPD3P42695 1498 aa22.11■■□□□ 1.13
TPM1-209ENST00000558072 HMGXB3Q12766 1538 aa22.1■■□□□ 1.13
TPM1-209ENST00000558072 TOP2AP11388 1531 aaKnown RBP22.03■■□□□ 1.12
TPM1-209ENST00000558072 CCDC88BA6NC98 1476 aa21.77■■□□□ 1.08
TPM1-209ENST00000558072 NESP48681 1621 aa21.69■■□□□ 1.06
TPM1-209ENST00000558072 LAMC3Q9Y6N6 1575 aa21.51■■□□□ 1.03
TPM1-209ENST00000558072 CADPSQ9ULU8 1353 aa21.5■■□□□ 1.03
TPM1-209ENST00000558072 CFTRP13569 1480 aa21.48■■□□□ 1.03
TPM1-209ENST00000558072 PRDM2Q13029 1718 aa21.46■■□□□ 1.03
TPM1-209ENST00000558072 KIF21AQ7Z4S6 1674 aa21.45■■□□□ 1.02
TPM1-209ENST00000558072 FANCD2Q9BXW9 1451 aa21.34■■□□□ 1.01
TPM1-209ENST00000558072 ERCC6Q03468 1493 aa21.32■■□□□ 1
TPM1-209ENST00000558072 PDS5BQ9NTI5 1447 aa21.29■■□□□ 1
TPM1-209ENST00000558072 CEP164Q9UPV0 1460 aa21.26■□□□□ 0.99
TPM1-209ENST00000558072 ABCC8Q09428 1581 aa21.23■□□□□ 0.99
TPM1-209ENST00000558072 THOC2Q8NI27 1593 aaKnown RBP21.23■□□□□ 0.99
TPM1-209ENST00000558072 URB2Q14146 1524 aaKnown RBP21.17■□□□□ 0.98
TPM1-209ENST00000558072 MRC2Q9UBG0 1479 aa21.15■□□□□ 0.98
TPM1-209ENST00000558072 CUX1P39880 1505 aa21.1■□□□□ 0.97
TPM1-209ENST00000558072 SYNJ1O43426 1573 aa21.09■□□□□ 0.97
TPM1-209ENST00000558072 WDR62O43379 1518 aa21.08■□□□□ 0.96
TPM1-209ENST00000558072 TOPBP1Q92547 1522 aa21.07■□□□□ 0.96
TPM1-209ENST00000558072 DNMBPQ6XZF7 1577 aa21.06■□□□□ 0.96
TPM1-209ENST00000558072 WRNQ14191 1432 aaPredicted RBP eCLIP21.03■□□□□ 0.96
TPM1-209ENST00000558072 BIVM-ERCC5R4GMW8 1640 aa20.99■□□□□ 0.95
TPM1-209ENST00000558072 TOP2BQ02880 1626 aa20.96■□□□□ 0.95
TPM1-209ENST00000558072 FGD5Q6ZNL6 1462 aa20.94■□□□□ 0.94
TPM1-209ENST00000558072 POLA1P09884 1462 aaPredicted RBP20.91■□□□□ 0.94
TPM1-209ENST00000558072 CUX2O14529 1486 aa20.9■□□□□ 0.94
TPM1-209ENST00000558072 RAD54L2Q9Y4B4 1467 aa20.88■□□□□ 0.93
TPM1-209ENST00000558072 CHIC1Q5VXU3 224 aa20.88■□□□□ 0.93
TPM1-209ENST00000558072 TRIM41Q8WV44 630 aa20.85■□□□□ 0.93
TPM1-209ENST00000558072 TARBP1Q13395 1621 aaKnown RBP20.82■□□□□ 0.92
TPM1-209ENST00000558072 WDR97A6NE52 1622 aa20.81■□□□□ 0.92
TPM1-209ENST00000558072 ZNF608Q9ULD9 1512 aaPredicted RBP20.78■□□□□ 0.92
TPM1-209ENST00000558072 SOGA1O94964 1423 aa20.78■□□□□ 0.92
TPM1-209ENST00000558072 IFT140Q96RY7 1462 aa20.75■□□□□ 0.91
TPM1-209ENST00000558072 EIF4G3O43432 1585 aaKnown RBP20.71■□□□□ 0.91
TPM1-209ENST00000558072 ABCA10Q8WWZ4 1543 aa20.68■□□□□ 0.9
TPM1-209ENST00000558072 TDRD9Q8NDG6 1382 aaKnown RBP20.68■□□□□ 0.9
TPM1-209ENST00000558072 AQRO60306 1485 aaKnown RBP eCLIP20.66■□□□□ 0.9
TPM1-209ENST00000558072 ABCA5Q8WWZ7 1642 aa20.65■□□□□ 0.9
TPM1-209ENST00000558072 RUSC2Q8N2Y8 1516 aa20.65■□□□□ 0.9
TPM1-209ENST00000558072 PBRM1Q86U86 1689 aa20.61■□□□□ 0.89
TPM1-209ENST00000558072 GAPVD1Q14C86 1478 aa20.56■□□□□ 0.88
TPM1-209ENST00000558072 EEA1Q15075 1411 aa20.53■□□□□ 0.88
TPM1-209ENST00000558072 FAM9AQ8IZU1 332 aaPredicted RBP20.51■□□□□ 0.87
TPM1-209ENST00000558072 SNAPC4Q5SXM2 1469 aa20.5■□□□□ 0.87
TPM1-209ENST00000558072 KIF27Q86VH2 1401 aa20.5■□□□□ 0.87
TPM1-209ENST00000558072 GRIN2BQ13224 1484 aa20.48■□□□□ 0.87
TPM1-209ENST00000558072 ADAMTS12P58397 1594 aa20.45■□□□□ 0.86
TPM1-209ENST00000558072 ERICH3Q5RHP9 1530 aa20.42■□□□□ 0.86
TPM1-209ENST00000558072 CHD1O14646 1710 aa20.41■□□□□ 0.86
TPM1-209ENST00000558072 IGF1RP08069 1367 aa20.39■□□□□ 0.85
TPM1-209ENST00000558072 MAGI1Q96QZ7 1491 aaPredicted RBP20.36■□□□□ 0.85
TPM1-209ENST00000558072 CSRNP3Q8WYN3 585 aa20.35■□□□□ 0.85
TPM1-209ENST00000558072 CUL7Q14999 1698 aa20.35■□□□□ 0.85
TPM1-209ENST00000558072 EHMT2Q96KQ7 1210 aa20.33■□□□□ 0.85
TPM1-209ENST00000558072 FBLN2P98095 1184 aa20.3■□□□□ 0.84
TPM1-209ENST00000558072 SYNJ2O15056 1496 aa20.3■□□□□ 0.84
TPM1-209ENST00000558072 FHAD1B1AJZ9 1412 aa20.29■□□□□ 0.84
TPM1-209ENST00000558072 CARMIL1Q5VZK9 1371 aa20.28■□□□□ 0.84
TPM1-209ENST00000558072 GRIN2AQ12879 1464 aa20.26■□□□□ 0.83
TPM1-209ENST00000558072 PRXQ9BXM0 1461 aa20.24■□□□□ 0.83
TPM1-209ENST00000558072 RAPGEF2Q9Y4G8 1499 aa20.24■□□□□ 0.83
TPM1-209ENST00000558072 CEP170Q5SW79 1584 aa20.23■□□□□ 0.83
TPM1-209ENST00000558072 CHMP7Q8WUX9 453 aaPredicted RBP20.22■□□□□ 0.83
TPM1-209ENST00000558072 KIF21BO75037 1637 aa20.21■□□□□ 0.83
TPM1-209ENST00000558072 NUP160Q12769 1436 aa20.12■□□□□ 0.81
TPM1-209ENST00000558072 CTTNBP2Q8WZ74 1663 aa20.12■□□□□ 0.81
TPM1-209ENST00000558072 CLASP1Q7Z460 1538 aa20.12■□□□□ 0.81
TPM1-209ENST00000558072 GOLGA3Q08378 1498 aa20.11■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms