RNA–Protein interactions for RNA: ENST00000357980.8

TPM1-205, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 1,800 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-205ENST00000357980 NISCHQ9Y2I1 1504 aa39.29■■■■□ 3.88
TPM1-205ENST00000357980 CCDC180Q9P1Z9 1646 aa34.41■■■■□ 3.1
TPM1-205ENST00000357980 ZCCHC6Q5VYS8 1495 aaKnown RBP32.99■■■□□ 2.87
TPM1-205ENST00000357980 ABCC9O60706 1549 aa32.58■■■□□ 2.81
TPM1-205ENST00000357980 DCAF1Q9Y4B6 1507 aa32.53■■■□□ 2.8
TPM1-205ENST00000357980 DCAF8L2P0C7V8 631 aa32.31■■■□□ 2.76
TPM1-205ENST00000357980 MYO15BQ96JP2 1530 aa32.22■■■□□ 2.75
TPM1-205ENST00000357980 NACADO15069 1562 aa32.04■■■□□ 2.72
TPM1-205ENST00000357980 SHROOM4Q9ULL8 1493 aa31.8■■■□□ 2.68
TPM1-205ENST00000357980 RB1CC1Q8TDY2 1594 aa31.8■■■□□ 2.68
TPM1-205ENST00000357980 SCRIBQ14160 1630 aa31.55■■■□□ 2.64
TPM1-205ENST00000357980 UNC13AQ9UPW8 1703 aa31.23■■■□□ 2.59
TPM1-205ENST00000357980 BICRAQ9NZM4 1560 aa30.89■■■□□ 2.53
TPM1-205ENST00000357980 PABPN1Q86U42 306 aaKnown RBP eCLIP30.63■■■□□ 2.491e-13■■■□□ 18.2
TPM1-205ENST00000357980 CECR2Q9BXF3 1484 aa30.52■■■□□ 2.48
TPM1-205ENST00000357980 SUPT5HO00267 1087 aaKnown RBP30.47■■■□□ 2.47
TPM1-205ENST00000357980 RSF1Q96T23 1441 aaPredicted RBP30.39■■■□□ 2.45
TPM1-205ENST00000357980 BAZ1AQ9NRL2 1556 aaPredicted RBP30.35■■■□□ 2.45
TPM1-205ENST00000357980 MROH2BQ7Z745 1585 aa30.34■■■□□ 2.45
TPM1-205ENST00000357980 SMARCA4P51532 1647 aa30.26■■■□□ 2.44
TPM1-205ENST00000357980 WIZO95785 1651 aa30.09■■■□□ 2.41
TPM1-205ENST00000357980 EIF4G1Q04637 1599 aaKnown RBP29.94■■■□□ 2.38
TPM1-205ENST00000357980 PEG3Q9GZU2 1588 aa29.94■■■□□ 2.38
TPM1-205ENST00000357980 TOP2AP11388 1531 aaKnown RBP29.78■■■□□ 2.36
TPM1-205ENST00000357980 ATAD2BQ9ULI0 1458 aa29.78■■■□□ 2.36
TPM1-205ENST00000357980 SMARCA2P51531 1590 aa29.77■■■□□ 2.36
TPM1-205ENST00000357980 BAZ1BQ9UIG0 1483 aaKnown RBP29.59■■■□□ 2.33
TPM1-205ENST00000357980 NCAPD3P42695 1498 aa29.56■■■□□ 2.32
TPM1-205ENST00000357980 HMGXB3Q12766 1538 aa29.54■■■□□ 2.32
TPM1-205ENST00000357980 CC2D2AQ9P2K1 1620 aa29.53■■■□□ 2.32
TPM1-205ENST00000357980 CCDC88BA6NC98 1476 aa29.44■■■□□ 2.3
TPM1-205ENST00000357980 CHIC1Q5VXU3 224 aa29.13■■■□□ 2.25
TPM1-205ENST00000357980 DNAJC5BQ9UF47 199 aa28.87■■■□□ 2.21
TPM1-205ENST00000357980 CFTRP13569 1480 aa28.85■■■□□ 2.21
TPM1-205ENST00000357980 PRDM2Q13029 1718 aa28.79■■■□□ 2.2
TPM1-205ENST00000357980 ABCC8Q09428 1581 aa28.76■■■□□ 2.2
TPM1-205ENST00000357980 CADPSQ9ULU8 1353 aa28.76■■■□□ 2.19
TPM1-205ENST00000357980 TRIM41Q8WV44 630 aa28.68■■■□□ 2.18
TPM1-205ENST00000357980 LAMC3Q9Y6N6 1575 aa28.61■■■□□ 2.17
TPM1-205ENST00000357980 WRNQ14191 1432 aaPredicted RBP eCLIP28.59■■■□□ 2.17
TPM1-205ENST00000357980 NESP48681 1621 aa28.57■■■□□ 2.16
TPM1-205ENST00000357980 SYNJ1O43426 1573 aa28.53■■■□□ 2.16
TPM1-205ENST00000357980 FANCD2Q9BXW9 1451 aa28.45■■■□□ 2.14
TPM1-205ENST00000357980 TOP2BQ02880 1626 aa28.43■■■□□ 2.14
TPM1-205ENST00000357980 BIVM-ERCC5R4GMW8 1640 aa28.43■■■□□ 2.14
TPM1-205ENST00000357980 CUX1P39880 1505 aa28.39■■■□□ 2.14
TPM1-205ENST00000357980 PDS5BQ9NTI5 1447 aa28.33■■■□□ 2.13
TPM1-205ENST00000357980 CEP164Q9UPV0 1460 aa28.29■■■□□ 2.12
TPM1-205ENST00000357980 KIF21AQ7Z4S6 1674 aa28.29■■■□□ 2.12
TPM1-205ENST00000357980 DNMBPQ6XZF7 1577 aa28.2■■■□□ 2.1
TPM1-205ENST00000357980 SOGA1O94964 1423 aa28.17■■■□□ 2.1
TPM1-205ENST00000357980 TOPBP1Q92547 1522 aa28.14■■■□□ 2.1
TPM1-205ENST00000357980 URB2Q14146 1524 aaKnown RBP28.13■■■□□ 2.09
TPM1-205ENST00000357980 FAM9AQ8IZU1 332 aaPredicted RBP28.11■■■□□ 2.09
TPM1-205ENST00000357980 EEA1Q15075 1411 aa28.09■■■□□ 2.09
TPM1-205ENST00000357980 FGD5Q6ZNL6 1462 aa28.08■■■□□ 2.09
TPM1-205ENST00000357980 RUSC2Q8N2Y8 1516 aa28.07■■■□□ 2.08
TPM1-205ENST00000357980 MRC2Q9UBG0 1479 aa28■■■□□ 2.07
TPM1-205ENST00000357980 POLA1P09884 1462 aaPredicted RBP27.99■■■□□ 2.07
TPM1-205ENST00000357980 LOC105371045A0A1W2PR82 267 aa27.97■■■□□ 2.07
TPM1-205ENST00000357980 ERCC6Q03468 1493 aa27.94■■■□□ 2.06
TPM1-205ENST00000357980 WDR62O43379 1518 aa27.9■■■□□ 2.06
TPM1-205ENST00000357980 CSRNP3Q8WYN3 585 aa27.89■■■□□ 2.06
TPM1-205ENST00000357980 THOC2Q8NI27 1593 aaKnown RBP27.88■■■□□ 2.05
TPM1-205ENST00000357980 KIF27Q86VH2 1401 aa27.87■■■□□ 2.05
TPM1-205ENST00000357980 RAD54L2Q9Y4B4 1467 aa27.86■■■□□ 2.05
TPM1-205ENST00000357980 ABCA10Q8WWZ4 1543 aa27.86■■■□□ 2.05
TPM1-205ENST00000357980 WDR97A6NE52 1622 aa27.85■■■□□ 2.05
TPM1-205ENST00000357980 CUX2O14529 1486 aa27.84■■■□□ 2.05
TPM1-205ENST00000357980 KIF21BO75037 1637 aa27.79■■■□□ 2.04
TPM1-205ENST00000357980 TARBP1Q13395 1621 aaKnown RBP27.78■■■□□ 2.04
TPM1-205ENST00000357980 EHMT2Q96KQ7 1210 aa27.69■■■□□ 2.02
TPM1-205ENST00000357980 GOLGA3Q08378 1498 aa27.68■■■□□ 2.02
TPM1-205ENST00000357980 PRXQ9BXM0 1461 aa27.68■■■□□ 2.02
TPM1-205ENST00000357980 ABCA5Q8WWZ7 1642 aa27.68■■■□□ 2.02
TPM1-205ENST00000357980 IGF1RP08069 1367 aa27.65■■■□□ 2.02
TPM1-205ENST00000357980 ERICH3Q5RHP9 1530 aa27.63■■■□□ 2.01
TPM1-205ENST00000357980 IFT140Q96RY7 1462 aa27.62■■■□□ 2.01
TPM1-205ENST00000357980 RAPGEF2Q9Y4G8 1499 aa27.62■■■□□ 2.01
TPM1-205ENST00000357980 TDRD9Q8NDG6 1382 aaKnown RBP27.58■■■□□ 2.01
TPM1-205ENST00000357980 GAPVD1Q14C86 1478 aa27.56■■■□□ 2
TPM1-205ENST00000357980 TNIKQ9UKE5 1360 aa27.55■■■□□ 2
TPM1-205ENST00000357980 CUL7Q14999 1698 aa27.52■■■□□ 2
TPM1-205ENST00000357980 CARMIL1Q5VZK9 1371 aa27.49■■□□□ 1.99
TPM1-205ENST00000357980 PBRM1Q86U86 1689 aa27.49■■□□□ 1.99
TPM1-205ENST00000357980 ZNF608Q9ULD9 1512 aaPredicted RBP27.48■■□□□ 1.99
TPM1-205ENST00000357980 UBTFP17480 764 aaKnown RBP27.47■■□□□ 1.99
TPM1-205ENST00000357980 AQRO60306 1485 aaKnown RBP eCLIP27.45■■□□□ 1.992e-12■■■■□ 23
TPM1-205ENST00000357980 EIF4G3O43432 1585 aaKnown RBP27.43■■□□□ 1.98
TPM1-205ENST00000357980 CEP162Q5TB80 1403 aa27.4■■□□□ 1.98
TPM1-205ENST00000357980 GRIN2BQ13224 1484 aa27.38■■□□□ 1.97
TPM1-205ENST00000357980 ADAMTS12P58397 1594 aa27.32■■□□□ 1.96
TPM1-205ENST00000357980 FHAD1B1AJZ9 1412 aa27.27■■□□□ 1.96
TPM1-205ENST00000357980 CLIP1P30622 1438 aa27.22■■□□□ 1.95
TPM1-205ENST00000357980 SNAPC4Q5SXM2 1469 aa27.22■■□□□ 1.95
TPM1-205ENST00000357980 CTTNBP2Q8WZ74 1663 aa27.2■■□□□ 1.95
TPM1-205ENST00000357980 MAGI1Q96QZ7 1491 aaPredicted RBP27.19■■□□□ 1.94
TPM1-205ENST00000357980 SYNJ2O15056 1496 aa27.08■■□□□ 1.93
TPM1-205ENST00000357980 GRIN2AQ12879 1464 aa27.07■■□□□ 1.92
TPM1-205ENST00000357980 RANGAP1P46060 587 aaPredicted RBP27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms