RNA–Protein interactions for RNA: ENST00000558347.5

TPM1-212, Transcript of tropomyosin 1, humanhuman

TSL 5

Gene TPM1, Length 1,525 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-212ENST00000558347 NISCHQ9Y2I1 1504 aa25.14■■□□□ 1.62
TPM1-212ENST00000558347 CCDC180Q9P1Z9 1646 aa22.45■■□□□ 1.18
TPM1-212ENST00000558347 ABCC9O60706 1549 aa22.21■■□□□ 1.15
TPM1-212ENST00000558347 RB1CC1Q8TDY2 1594 aa21.23■□□□□ 0.99
TPM1-212ENST00000558347 NACADO15069 1562 aa21.14■□□□□ 0.98
TPM1-212ENST00000558347 DCAF8L2P0C7V8 631 aa21.09■□□□□ 0.97
TPM1-212ENST00000558347 MYO15BQ96JP2 1530 aa20.94■□□□□ 0.94
TPM1-212ENST00000558347 ZCCHC6Q5VYS8 1495 aaKnown RBP20.9■□□□□ 0.94
TPM1-212ENST00000558347 UNC13AQ9UPW8 1703 aa20.81■□□□□ 0.92
TPM1-212ENST00000558347 DCAF1Q9Y4B6 1507 aa20.77■□□□□ 0.92
TPM1-212ENST00000558347 PABPN1Q86U42 306 aaKnown RBP eCLIP20.71■□□□□ 0.911e-13■■■□□ 18.2
TPM1-212ENST00000558347 BICRAQ9NZM4 1560 aa20.64■□□□□ 0.9
TPM1-212ENST00000558347 DNAJC5BQ9UF47 199 aa20.61■□□□□ 0.89
TPM1-212ENST00000558347 SCRIBQ14160 1630 aa20.49■□□□□ 0.87
TPM1-212ENST00000558347 SHROOM4Q9ULL8 1493 aa20.33■□□□□ 0.84
TPM1-212ENST00000558347 EIF4G1Q04637 1599 aaKnown RBP20.1■□□□□ 0.81
TPM1-212ENST00000558347 CC2D2AQ9P2K1 1620 aa20.08■□□□□ 0.81
TPM1-212ENST00000558347 CECR2Q9BXF3 1484 aa19.96■□□□□ 0.79
TPM1-212ENST00000558347 SMARCA4P51532 1647 aa19.57■□□□□ 0.72
TPM1-212ENST00000558347 NCAPD3P42695 1498 aa19.52■□□□□ 0.72
TPM1-212ENST00000558347 ATAD2BQ9ULI0 1458 aa19.51■□□□□ 0.71
TPM1-212ENST00000558347 BAZ1AQ9NRL2 1556 aaPredicted RBP19.49■□□□□ 0.71
TPM1-212ENST00000558347 SMARCA2P51531 1590 aa19.45■□□□□ 0.7
TPM1-212ENST00000558347 HMGXB3Q12766 1538 aa19.41■□□□□ 0.7
TPM1-212ENST00000558347 MROH2BQ7Z745 1585 aa19.39■□□□□ 0.69
TPM1-212ENST00000558347 PEG3Q9GZU2 1588 aa19.37■□□□□ 0.69
TPM1-212ENST00000558347 BAZ1BQ9UIG0 1483 aaKnown RBP19.33■□□□□ 0.68
TPM1-212ENST00000558347 WIZO95785 1651 aa19.18■□□□□ 0.66
TPM1-212ENST00000558347 NESP48681 1621 aa19.17■□□□□ 0.66
TPM1-212ENST00000558347 ERCC6Q03468 1493 aa19.12■□□□□ 0.65
TPM1-212ENST00000558347 RSF1Q96T23 1441 aaPredicted RBP19.07■□□□□ 0.64
TPM1-212ENST00000558347 LAMC3Q9Y6N6 1575 aa19.05■□□□□ 0.64
TPM1-212ENST00000558347 CUX2O14529 1486 aa19.01■□□□□ 0.63
TPM1-212ENST00000558347 CADPSQ9ULU8 1353 aa18.94■□□□□ 0.62
TPM1-212ENST00000558347 KIF21AQ7Z4S6 1674 aa18.93■□□□□ 0.62
TPM1-212ENST00000558347 TOP2AP11388 1531 aaKnown RBP18.93■□□□□ 0.62
TPM1-212ENST00000558347 THOC2Q8NI27 1593 aaKnown RBP18.92■□□□□ 0.62
TPM1-212ENST00000558347 PDS5BQ9NTI5 1447 aa18.91■□□□□ 0.62
TPM1-212ENST00000558347 CFTRP13569 1480 aa18.78■□□□□ 0.6
TPM1-212ENST00000558347 MRC2Q9UBG0 1479 aa18.75■□□□□ 0.59
TPM1-212ENST00000558347 FANCD2Q9BXW9 1451 aa18.73■□□□□ 0.59
TPM1-212ENST00000558347 CEP164Q9UPV0 1460 aa18.73■□□□□ 0.59
TPM1-212ENST00000558347 CCDC88BA6NC98 1476 aa18.72■□□□□ 0.59
TPM1-212ENST00000558347 WDR62O43379 1518 aa18.71■□□□□ 0.58
TPM1-212ENST00000558347 DNAJC5Q9H3Z4 198 aa18.69■□□□□ 0.58
TPM1-212ENST00000558347 PRDM2Q13029 1718 aa18.64■□□□□ 0.58
TPM1-212ENST00000558347 URB2Q14146 1524 aaKnown RBP18.57■□□□□ 0.56
TPM1-212ENST00000558347 TOPBP1Q92547 1522 aa18.4■□□□□ 0.54
TPM1-212ENST00000558347 SUPT5HO00267 1087 aaKnown RBP18.4■□□□□ 0.54
TPM1-212ENST00000558347 DNMBPQ6XZF7 1577 aa18.37■□□□□ 0.53
TPM1-212ENST00000558347 ABCC8Q09428 1581 aa18.35■□□□□ 0.53
TPM1-212ENST00000558347 IFT140Q96RY7 1462 aa18.33■□□□□ 0.52
TPM1-212ENST00000558347 ZNF608Q9ULD9 1512 aaPredicted RBP18.31■□□□□ 0.52
TPM1-212ENST00000558347 TARBP1Q13395 1621 aaKnown RBP18.24■□□□□ 0.51
TPM1-212ENST00000558347 POLA1P09884 1462 aaPredicted RBP18.24■□□□□ 0.51
TPM1-212ENST00000558347 EIF4G3O43432 1585 aaKnown RBP18.23■□□□□ 0.51
TPM1-212ENST00000558347 CUX1P39880 1505 aa18.2■□□□□ 0.5
TPM1-212ENST00000558347 RAD54L2Q9Y4B4 1467 aa18.18■□□□□ 0.5
TPM1-212ENST00000558347 AQRO60306 1485 aaKnown RBP eCLIP18.17■□□□□ 0.52e-12■■■■□ 23
TPM1-212ENST00000558347 FGD5Q6ZNL6 1462 aa18.17■□□□□ 0.5
TPM1-212ENST00000558347 OSCARQ8IYS5 282 aa18.17■□□□□ 0.5
TPM1-212ENST00000558347 SOGA1O94964 1423 aa18.14■□□□□ 0.49
TPM1-212ENST00000558347 TDRD9Q8NDG6 1382 aaKnown RBP18.09■□□□□ 0.49
TPM1-212ENST00000558347 CHD1O14646 1710 aa18.05■□□□□ 0.48
TPM1-212ENST00000558347 WDR97A6NE52 1622 aa18.05■□□□□ 0.48
TPM1-212ENST00000558347 TRIM41Q8WV44 630 aa17.99■□□□□ 0.47
TPM1-212ENST00000558347 SNAPC4Q5SXM2 1469 aa17.99■□□□□ 0.47
TPM1-212ENST00000558347 SYNJ1O43426 1573 aa17.98■□□□□ 0.47
TPM1-212ENST00000558347 BIVM-ERCC5R4GMW8 1640 aa17.98■□□□□ 0.47
TPM1-212ENST00000558347 WRNQ14191 1432 aaPredicted RBP eCLIP17.98■□□□□ 0.47
TPM1-212ENST00000558347 TOP2BQ02880 1626 aa17.97■□□□□ 0.47
TPM1-212ENST00000558347 ABCA10Q8WWZ4 1543 aa17.97■□□□□ 0.47
TPM1-212ENST00000558347 FBLN2P98095 1184 aa17.97■□□□□ 0.47
TPM1-212ENST00000558347 GRIN2BQ13224 1484 aa17.96■□□□□ 0.47
TPM1-212ENST00000558347 RIMBP3CA6NJZ7 1639 aa17.95■□□□□ 0.46
TPM1-212ENST00000558347 RIMBP3BA6NNM3 1639 aa17.95■□□□□ 0.46
TPM1-212ENST00000558347 RIMBP3Q9UFD9 1639 aa17.95■□□□□ 0.46
TPM1-212ENST00000558347 PBRM1Q86U86 1689 aa17.95■□□□□ 0.46
TPM1-212ENST00000558347 GAPVD1Q14C86 1478 aa17.94■□□□□ 0.46
TPM1-212ENST00000558347 ABCA5Q8WWZ7 1642 aa17.93■□□□□ 0.46
TPM1-212ENST00000558347 MAGI1Q96QZ7 1491 aaPredicted RBP17.93■□□□□ 0.46
TPM1-212ENST00000558347 ARHGEF11O15085 1522 aa17.91■□□□□ 0.46
TPM1-212ENST00000558347 SYNJ2O15056 1496 aa17.87■□□□□ 0.45
TPM1-212ENST00000558347 CHMP7Q8WUX9 453 aaPredicted RBP17.87■□□□□ 0.45
TPM1-212ENST00000558347 CLASP1Q7Z460 1538 aa17.83■□□□□ 0.45
TPM1-212ENST00000558347 ADAMTS12P58397 1594 aa17.78■□□□□ 0.44
TPM1-212ENST00000558347 ARAP1Q96P48 1450 aa17.76■□□□□ 0.43
TPM1-212ENST00000558347 GRIN2AQ12879 1464 aa17.74■□□□□ 0.43
TPM1-212ENST00000558347 ERICH3Q5RHP9 1530 aa17.74■□□□□ 0.43
TPM1-212ENST00000558347 CYB5RLQ6IPT4 315 aa17.73■□□□□ 0.43
TPM1-212ENST00000558347 FHAD1B1AJZ9 1412 aa17.71■□□□□ 0.43
TPM1-212ENST00000558347 CEP170Q5SW79 1584 aa17.69■□□□□ 0.42
TPM1-212ENST00000558347 NUP160Q12769 1436 aa17.68■□□□□ 0.42
TPM1-212ENST00000558347 ERCC6L2Q5T890 1561 aa17.6■□□□□ 0.41
TPM1-212ENST00000558347 KIF27Q86VH2 1401 aa17.59■□□□□ 0.41
TPM1-212ENST00000558347 IGF1RP08069 1367 aa17.58■□□□□ 0.4
TPM1-212ENST00000558347 SHROOM2Q13796 1616 aa17.57■□□□□ 0.4
TPM1-212ENST00000558347 CUL7Q14999 1698 aa17.54■□□□□ 0.4
TPM1-212ENST00000558347 RUSC2Q8N2Y8 1516 aa17.52■□□□□ 0.4
TPM1-212ENST00000558347 PRG4Q92954 1404 aaPredicted RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms