RNA–Protein interactions for RNA: ENST00000375755.7

MSH5-204, Transcript of mutS homolog 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MSH5, Length 3,094 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-204ENST00000375755 NISCHQ9Y2I1 1504 aa27.28■■□□□ 1.96
MSH5-204ENST00000375755 CCDC180Q9P1Z9 1646 aa23.65■■□□□ 1.38
MSH5-204ENST00000375755 ZCCHC6Q5VYS8 1495 aaKnown RBP22.95■■□□□ 1.26
MSH5-204ENST00000375755 SHROOM4Q9ULL8 1493 aa22.93■■□□□ 1.26
MSH5-204ENST00000375755 DCAF8L2P0C7V8 631 aa22.84■■□□□ 1.25
MSH5-204ENST00000375755 ABCC9O60706 1549 aa22.42■■□□□ 1.18
MSH5-204ENST00000375755 DCAF1Q9Y4B6 1507 aa22.33■■□□□ 1.16
MSH5-204ENST00000375755 SUPT5HO00267 1087 aaKnown RBP22.17■■□□□ 1.14
MSH5-204ENST00000375755 MYO15BQ96JP2 1530 aa22.15■■□□□ 1.14
MSH5-204ENST00000375755 NACADO15069 1562 aa22.02■■□□□ 1.12
MSH5-204ENST00000375755 SCRIBQ14160 1630 aa21.96■■□□□ 1.11
MSH5-204ENST00000375755 RB1CC1Q8TDY2 1594 aa21.85■■□□□ 1.09
MSH5-204ENST00000375755 HRCP23327 699 aa21.71■■□□□ 1.07
MSH5-204ENST00000375755 UNC13AQ9UPW8 1703 aa21.57■■□□□ 1.04
MSH5-204ENST00000375755 CECR2Q9BXF3 1484 aa21.38■■□□□ 1.01
MSH5-204ENST00000375755 RSF1Q96T23 1441 aaPredicted RBP21.38■■□□□ 1.01
MSH5-204ENST00000375755 BICRAQ9NZM4 1560 aa21.32■■□□□ 1
MSH5-204ENST00000375755 PPARGC1BQ86YN6 1023 aaKnown RBP21.27■■□□□ 1
MSH5-204ENST00000375755 PCGF6Q9BYE7 350 aa21.27■□□□□ 0.99
MSH5-204ENST00000375755 CHIC1Q5VXU3 224 aa21.25■□□□□ 0.99
MSH5-204ENST00000375755 MROH2BQ7Z745 1585 aa21.23■□□□□ 0.99
MSH5-204ENST00000375755 PABPN1Q86U42 306 aaKnown RBP eCLIP21.22■□□□□ 0.992e-6■■■□□ 15.7
MSH5-204ENST00000375755 WIZO95785 1651 aa21.11■□□□□ 0.97
MSH5-204ENST00000375755 BAZ1AQ9NRL2 1556 aaPredicted RBP20.97■□□□□ 0.95
MSH5-204ENST00000375755 SMARCA4P51532 1647 aa20.91■□□□□ 0.94
MSH5-204ENST00000375755 PELP1Q8IZL8 1130 aaKnown RBP20.8■□□□□ 0.92
MSH5-204ENST00000375755 TOP2AP11388 1531 aaKnown RBP20.69■□□□□ 0.9
MSH5-204ENST00000375755 LOC105371045A0A1W2PR82 267 aa20.67■□□□□ 0.9
MSH5-204ENST00000375755 TRIM41Q8WV44 630 aa20.64■□□□□ 0.89
MSH5-204ENST00000375755 CCDC88BA6NC98 1476 aa20.63■□□□□ 0.89
MSH5-204ENST00000375755 EIF4G1Q04637 1599 aaKnown RBP20.62■□□□□ 0.89
MSH5-204ENST00000375755 TRIM26Q12899 539 aaPredicted RBP20.6■□□□□ 0.89
MSH5-204ENST00000375755 SMARCA2P51531 1590 aa20.6■□□□□ 0.89
MSH5-204ENST00000375755 PEG3Q9GZU2 1588 aa20.59■□□□□ 0.89
MSH5-204ENST00000375755 FAM9AQ8IZU1 332 aaPredicted RBP20.54■□□□□ 0.88
MSH5-204ENST00000375755 SCAF1Q9H7N4 1312 aaKnown RBP20.52■□□□□ 0.87
MSH5-204ENST00000375755 ATAD2BQ9ULI0 1458 aa20.5■□□□□ 0.87
MSH5-204ENST00000375755 EHMT2Q96KQ7 1210 aa20.44■□□□□ 0.86
MSH5-204ENST00000375755 ABCC8Q09428 1581 aa20.43■□□□□ 0.86
MSH5-204ENST00000375755 BAZ1BQ9UIG0 1483 aaKnown RBP20.4■□□□□ 0.86
MSH5-204ENST00000375755 ZEB1P37275 1124 aaPredicted RBP20.39■□□□□ 0.85
MSH5-204ENST00000375755 CC2D2AQ9P2K1 1620 aa20.37■□□□□ 0.85
MSH5-204ENST00000375755 NCAPD3P42695 1498 aa20.33■□□□□ 0.84
MSH5-204ENST00000375755 HMGXB3Q12766 1538 aa20.3■□□□□ 0.84
MSH5-204ENST00000375755 SOGA1O94964 1423 aa20.1■□□□□ 0.81
MSH5-204ENST00000375755 RUSC2Q8N2Y8 1516 aa20.08■□□□□ 0.8
MSH5-204ENST00000375755 WRNQ14191 1432 aaPredicted RBP eCLIP20.07■□□□□ 0.8
MSH5-204ENST00000375755 SYNJ1O43426 1573 aa20.06■□□□□ 0.8
MSH5-204ENST00000375755 DNAJC5BQ9UF47 199 aa20.02■□□□□ 0.8
MSH5-204ENST00000375755 ACIN1Q9UKV3 1341 aaKnown RBP20.01■□□□□ 0.79
MSH5-204ENST00000375755 NEUROD1Q13562 356 aa19.97■□□□□ 0.79
MSH5-204ENST00000375755 MYT1Q01538 1121 aa19.95■□□□□ 0.78
MSH5-204ENST00000375755 CFTRP13569 1480 aa19.87■□□□□ 0.77
MSH5-204ENST00000375755 CSRNP3Q8WYN3 585 aa19.87■□□□□ 0.77
MSH5-204ENST00000375755 GTF3C3Q9Y5Q9 886 aa19.84■□□□□ 0.77
MSH5-204ENST00000375755 TOP2BQ02880 1626 aa19.81■□□□□ 0.76
MSH5-204ENST00000375755 PRDM2Q13029 1718 aa19.79■□□□□ 0.76
MSH5-204ENST00000375755 CUX1P39880 1505 aa19.79■□□□□ 0.76
MSH5-204ENST00000375755 CADPSQ9ULU8 1353 aa19.75■□□□□ 0.75
MSH5-204ENST00000375755 BIVM-ERCC5R4GMW8 1640 aa19.75■□□□□ 0.75
MSH5-204ENST00000375755 UBTFP17480 764 aaKnown RBP19.75■□□□□ 0.75
MSH5-204ENST00000375755 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.74■□□□□ 0.75
MSH5-204ENST00000375755 EEA1Q15075 1411 aa19.74■□□□□ 0.75
MSH5-204ENST00000375755 CENPBP07199 599 aaPredicted RBP19.72■□□□□ 0.75
MSH5-204ENST00000375755 NESP48681 1621 aa19.71■□□□□ 0.75
MSH5-204ENST00000375755 DIEXFQ68CQ4 756 aaKnown RBP19.68■□□□□ 0.74
MSH5-204ENST00000375755 CEP162Q5TB80 1403 aa19.68■□□□□ 0.74
MSH5-204ENST00000375755 CCER1Q8TC90 406 aaPredicted RBP19.67■□□□□ 0.74
MSH5-204ENST00000375755 LAMC3Q9Y6N6 1575 aa19.67■□□□□ 0.74
MSH5-204ENST00000375755 GOLGA3Q08378 1498 aa19.65■□□□□ 0.74
MSH5-204ENST00000375755 TNIKQ9UKE5 1360 aa19.65■□□□□ 0.74
MSH5-204ENST00000375755 RAPGEF2Q9Y4G8 1499 aa19.62■□□□□ 0.73
MSH5-204ENST00000375755 RANGAP1P46060 587 aaPredicted RBP19.62■□□□□ 0.73
MSH5-204ENST00000375755 TTBK1Q5TCY1 1321 aaPredicted RBP19.6■□□□□ 0.73
MSH5-204ENST00000375755 CEP164Q9UPV0 1460 aa19.59■□□□□ 0.73
MSH5-204ENST00000375755 FANCD2Q9BXW9 1451 aa19.58■□□□□ 0.73
MSH5-204ENST00000375755 KIF21BO75037 1637 aa19.58■□□□□ 0.72
MSH5-204ENST00000375755 FGD5Q6ZNL6 1462 aa19.51■□□□□ 0.71
MSH5-204ENST00000375755 KIF21AQ7Z4S6 1674 aa19.5■□□□□ 0.71
MSH5-204ENST00000375755 KIF27Q86VH2 1401 aa19.47■□□□□ 0.71
MSH5-204ENST00000375755 CUX2O14529 1486 aa19.46■□□□□ 0.71
MSH5-204ENST00000375755 PRXQ9BXM0 1461 aa19.45■□□□□ 0.7
MSH5-204ENST00000375755 RAD54L2Q9Y4B4 1467 aa19.43■□□□□ 0.7
MSH5-204ENST00000375755 PDS5BQ9NTI5 1447 aa19.43■□□□□ 0.7
MSH5-204ENST00000375755 CLIP1P30622 1438 aa19.42■□□□□ 0.7
MSH5-204ENST00000375755 TOPBP1Q92547 1522 aa19.4■□□□□ 0.7
MSH5-204ENST00000375755 DNMBPQ6XZF7 1577 aa19.38■□□□□ 0.69
MSH5-204ENST00000375755 IGF1RP08069 1367 aa19.37■□□□□ 0.69
MSH5-204ENST00000375755 URB2Q14146 1524 aaKnown RBP19.37■□□□□ 0.69
MSH5-204ENST00000375755 POLA1P09884 1462 aaPredicted RBP19.36■□□□□ 0.69
MSH5-204ENST00000375755 ERICH3Q5RHP9 1530 aa19.35■□□□□ 0.69
MSH5-204ENST00000375755 YTHDC1Q96MU7 727 aaKnown RBP19.35■□□□□ 0.69
MSH5-204ENST00000375755 ZNF316A6NFI3 1004 aaPredicted RBP19.33■□□□□ 0.68
MSH5-204ENST00000375755 CARMIL1Q5VZK9 1371 aa19.26■□□□□ 0.67
MSH5-204ENST00000375755 THOC2Q8NI27 1593 aaKnown RBP19.25■□□□□ 0.67
MSH5-204ENST00000375755 MRC2Q9UBG0 1479 aa19.25■□□□□ 0.67
MSH5-204ENST00000375755 VPS8Q8N3P4 1428 aa19.24■□□□□ 0.67
MSH5-204ENST00000375755 ABCA10Q8WWZ4 1543 aa19.23■□□□□ 0.67
MSH5-204ENST00000375755 ARAP1Q96P48 1450 aa19.23■□□□□ 0.67
MSH5-204ENST00000375755 WDR62O43379 1518 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms