RNA–Protein interactions for RNA: ENST00000560445.1

TPM1-223, Transcript of tropomyosin 1, humanhuman

TSL 3 BASIC

Gene TPM1, Length 485 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-223ENST00000560445 NISCHQ9Y2I1 1504 aa34.73■■■■□ 3.15
TPM1-223ENST00000560445 CCDC180Q9P1Z9 1646 aa31.18■■■□□ 2.58
TPM1-223ENST00000560445 ABCC9O60706 1549 aa30.73■■■□□ 2.51
TPM1-223ENST00000560445 RB1CC1Q8TDY2 1594 aa29.54■■■□□ 2.32
TPM1-223ENST00000560445 NACADO15069 1562 aa29.4■■■□□ 2.3
TPM1-223ENST00000560445 MYO15BQ96JP2 1530 aa29.12■■■□□ 2.25
TPM1-223ENST00000560445 DCAF8L2P0C7V8 631 aa29.12■■■□□ 2.25
TPM1-223ENST00000560445 ZCCHC6Q5VYS8 1495 aaKnown RBP28.85■■■□□ 2.21
TPM1-223ENST00000560445 DCAF1Q9Y4B6 1507 aa28.81■■■□□ 2.2
TPM1-223ENST00000560445 UNC13AQ9UPW8 1703 aa28.71■■■□□ 2.19
TPM1-223ENST00000560445 PABPN1Q86U42 306 aaKnown RBP eCLIP28.57■■■□□ 2.16
TPM1-223ENST00000560445 BICRAQ9NZM4 1560 aa28.48■■■□□ 2.15
TPM1-223ENST00000560445 SHROOM4Q9ULL8 1493 aa28.44■■■□□ 2.14
TPM1-223ENST00000560445 DNAJC5BQ9UF47 199 aa28.41■■■□□ 2.14
TPM1-223ENST00000560445 SCRIBQ14160 1630 aa28.28■■■□□ 2.12
TPM1-223ENST00000560445 EIF4G1Q04637 1599 aaKnown RBP27.86■■■□□ 2.05
TPM1-223ENST00000560445 CC2D2AQ9P2K1 1620 aa27.81■■■□□ 2.04
TPM1-223ENST00000560445 CECR2Q9BXF3 1484 aa27.72■■■□□ 2.03
TPM1-223ENST00000560445 NCAPD3P42695 1498 aa27.06■■□□□ 1.92
TPM1-223ENST00000560445 SMARCA2P51531 1590 aa27.05■■□□□ 1.92
TPM1-223ENST00000560445 SMARCA4P51532 1647 aa27.05■■□□□ 1.92
TPM1-223ENST00000560445 BAZ1AQ9NRL2 1556 aaPredicted RBP27.03■■□□□ 1.92
TPM1-223ENST00000560445 ATAD2BQ9ULI0 1458 aa26.98■■□□□ 1.91
TPM1-223ENST00000560445 HMGXB3Q12766 1538 aa26.95■■□□□ 1.9
TPM1-223ENST00000560445 PEG3Q9GZU2 1588 aa26.83■■□□□ 1.89
TPM1-223ENST00000560445 BAZ1BQ9UIG0 1483 aaKnown RBP26.81■■□□□ 1.88
TPM1-223ENST00000560445 MROH2BQ7Z745 1585 aa26.68■■□□□ 1.86
TPM1-223ENST00000560445 ERCC6Q03468 1493 aa26.66■■□□□ 1.86
TPM1-223ENST00000560445 CUX2O14529 1486 aa26.55■■□□□ 1.84
TPM1-223ENST00000560445 LAMC3Q9Y6N6 1575 aa26.48■■□□□ 1.83
TPM1-223ENST00000560445 NESP48681 1621 aa26.41■■□□□ 1.82
TPM1-223ENST00000560445 WIZO95785 1651 aa26.37■■□□□ 1.81
TPM1-223ENST00000560445 PDS5BQ9NTI5 1447 aa26.33■■□□□ 1.81
TPM1-223ENST00000560445 RSF1Q96T23 1441 aaPredicted RBP26.25■■□□□ 1.79
TPM1-223ENST00000560445 CADPSQ9ULU8 1353 aa26.25■■□□□ 1.79
TPM1-223ENST00000560445 THOC2Q8NI27 1593 aaKnown RBP26.2■■□□□ 1.79
TPM1-223ENST00000560445 TOP2AP11388 1531 aaKnown RBP26.18■■□□□ 1.78
TPM1-223ENST00000560445 KIF21AQ7Z4S6 1674 aa26.17■■□□□ 1.78
TPM1-223ENST00000560445 DNAJC5Q9H3Z4 198 aa26.1■■□□□ 1.77
TPM1-223ENST00000560445 MRC2Q9UBG0 1479 aa26.04■■□□□ 1.76
TPM1-223ENST00000560445 CEP164Q9UPV0 1460 aa26.01■■□□□ 1.75
TPM1-223ENST00000560445 CFTRP13569 1480 aa26■■□□□ 1.75
TPM1-223ENST00000560445 WDR62O43379 1518 aa25.95■■□□□ 1.74
TPM1-223ENST00000560445 FANCD2Q9BXW9 1451 aa25.95■■□□□ 1.74
TPM1-223ENST00000560445 PRDM2Q13029 1718 aa25.85■■□□□ 1.73
TPM1-223ENST00000560445 CCDC88BA6NC98 1476 aa25.79■■□□□ 1.72
TPM1-223ENST00000560445 URB2Q14146 1524 aaKnown RBP25.65■■□□□ 1.7
TPM1-223ENST00000560445 ABCC8Q09428 1581 aa25.6■■□□□ 1.69
TPM1-223ENST00000560445 IFT140Q96RY7 1462 aa25.49■■□□□ 1.67
TPM1-223ENST00000560445 TOPBP1Q92547 1522 aa25.47■■□□□ 1.67
TPM1-223ENST00000560445 DNMBPQ6XZF7 1577 aa25.46■■□□□ 1.67
TPM1-223ENST00000560445 OSCARQ8IYS5 282 aa25.32■■□□□ 1.64
TPM1-223ENST00000560445 ZNF608Q9ULD9 1512 aaPredicted RBP25.26■■□□□ 1.63
TPM1-223ENST00000560445 SUPT5HO00267 1087 aaKnown RBP25.24■■□□□ 1.63
TPM1-223ENST00000560445 EIF4G3O43432 1585 aaKnown RBP25.23■■□□□ 1.63
TPM1-223ENST00000560445 POLA1P09884 1462 aaPredicted RBP25.21■■□□□ 1.63
TPM1-223ENST00000560445 TARBP1Q13395 1621 aaKnown RBP25.21■■□□□ 1.63
TPM1-223ENST00000560445 WDR97A6NE52 1622 aa25.17■■□□□ 1.62
TPM1-223ENST00000560445 SOGA1O94964 1423 aa25.12■■□□□ 1.61
TPM1-223ENST00000560445 FGD5Q6ZNL6 1462 aa25.1■■□□□ 1.61
TPM1-223ENST00000560445 CUX1P39880 1505 aa25.07■■□□□ 1.6
TPM1-223ENST00000560445 AQRO60306 1485 aaKnown RBP eCLIP25.07■■□□□ 1.62e-12■■■■□ 23
TPM1-223ENST00000560445 RAD54L2Q9Y4B4 1467 aa25.03■■□□□ 1.6
TPM1-223ENST00000560445 TRIM41Q8WV44 630 aa25.03■■□□□ 1.6
TPM1-223ENST00000560445 AEBP2Q6ZN18 517 aaPredicted RBP24.99■■□□□ 1.59
TPM1-223ENST00000560445 CHD1O14646 1710 aa24.98■■□□□ 1.59
TPM1-223ENST00000560445 TDRD9Q8NDG6 1382 aaKnown RBP24.97■■□□□ 1.59
TPM1-223ENST00000560445 MAGI1Q96QZ7 1491 aaPredicted RBP24.95■■□□□ 1.58
TPM1-223ENST00000560445 GRIN2BQ13224 1484 aa24.94■■□□□ 1.58
TPM1-223ENST00000560445 FBLN2P98095 1184 aa24.92■■□□□ 1.58
TPM1-223ENST00000560445 RIMBP3CA6NJZ7 1639 aa24.9■■□□□ 1.58
TPM1-223ENST00000560445 RIMBP3BA6NNM3 1639 aa24.9■■□□□ 1.58
TPM1-223ENST00000560445 RIMBP3Q9UFD9 1639 aa24.9■■□□□ 1.58
TPM1-223ENST00000560445 SNAPC4Q5SXM2 1469 aa24.89■■□□□ 1.58
TPM1-223ENST00000560445 ARHGEF11O15085 1522 aa24.87■■□□□ 1.57
TPM1-223ENST00000560445 ABCA10Q8WWZ4 1543 aa24.87■■□□□ 1.57
TPM1-223ENST00000560445 WRNQ14191 1432 aaPredicted RBP eCLIP24.86■■□□□ 1.57
TPM1-223ENST00000560445 GAPVD1Q14C86 1478 aa24.84■■□□□ 1.57
TPM1-223ENST00000560445 BIVM-ERCC5R4GMW8 1640 aa24.83■■□□□ 1.57
TPM1-223ENST00000560445 CHMP7Q8WUX9 453 aaPredicted RBP24.83■■□□□ 1.57
TPM1-223ENST00000560445 TOP2BQ02880 1626 aa24.83■■□□□ 1.56
TPM1-223ENST00000560445 PBRM1Q86U86 1689 aa24.82■■□□□ 1.56
TPM1-223ENST00000560445 SYNJ1O43426 1573 aa24.82■■□□□ 1.56
TPM1-223ENST00000560445 SYNJ2O15056 1496 aa24.82■■□□□ 1.56
TPM1-223ENST00000560445 ABCA5Q8WWZ7 1642 aa24.79■■□□□ 1.56
TPM1-223ENST00000560445 CLASP1Q7Z460 1538 aa24.71■■□□□ 1.55
TPM1-223ENST00000560445 CYB5RLQ6IPT4 315 aa24.62■■□□□ 1.53
TPM1-223ENST00000560445 ERICH3Q5RHP9 1530 aa24.61■■□□□ 1.53
TPM1-223ENST00000560445 ADAMTS12P58397 1594 aa24.6■■□□□ 1.53
TPM1-223ENST00000560445 ARAP1Q96P48 1450 aa24.6■■□□□ 1.53
TPM1-223ENST00000560445 FHAD1B1AJZ9 1412 aa24.58■■□□□ 1.53
TPM1-223ENST00000560445 GRIN2AQ12879 1464 aa24.58■■□□□ 1.52
TPM1-223ENST00000560445 NUP160Q12769 1436 aa24.48■■□□□ 1.51
TPM1-223ENST00000560445 CEP170Q5SW79 1584 aa24.42■■□□□ 1.5
TPM1-223ENST00000560445 KIF27Q86VH2 1401 aa24.4■■□□□ 1.5
TPM1-223ENST00000560445 SHROOM2Q13796 1616 aa24.35■■□□□ 1.49
TPM1-223ENST00000560445 CUL7Q14999 1698 aa24.34■■□□□ 1.49
TPM1-223ENST00000560445 TRHP20396 242 aaPredicted RBP24.32■■□□□ 1.48
TPM1-223ENST00000560445 RUSC2Q8N2Y8 1516 aa24.25■■□□□ 1.47
TPM1-223ENST00000560445 IGF1RP08069 1367 aa24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms