RNA–Protein interactions for RNA: ENST00000375703.7

MSH5-201, Transcript of mutS homolog 5, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MSH5, Length 2,708 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-201ENST00000375703 NISCHQ9Y2I1 1504 aa29.9■■■□□ 2.38
MSH5-201ENST00000375703 SHROOM4Q9ULL8 1493 aa25.57■■□□□ 1.68
MSH5-201ENST00000375703 CCDC180Q9P1Z9 1646 aa25.33■■□□□ 1.65
MSH5-201ENST00000375703 ZCCHC6Q5VYS8 1495 aaKnown RBP25.28■■□□□ 1.64
MSH5-201ENST00000375703 SUPT5HO00267 1087 aaKnown RBP25.16■■□□□ 1.62
MSH5-201ENST00000375703 DCAF8L2P0C7V8 631 aa24.87■■□□□ 1.57
MSH5-201ENST00000375703 DCAF1Q9Y4B6 1507 aa24.53■■□□□ 1.52
MSH5-201ENST00000375703 CHIC1Q5VXU3 224 aa24.5■■□□□ 1.51
MSH5-201ENST00000375703 MYO15BQ96JP2 1530 aa24.33■■□□□ 1.49
MSH5-201ENST00000375703 HRCP23327 699 aa23.89■■□□□ 1.41
MSH5-201ENST00000375703 ABCC9O60706 1549 aa23.84■■□□□ 1.41
MSH5-201ENST00000375703 PCGF6Q9BYE7 350 aa23.83■■□□□ 1.41
MSH5-201ENST00000375703 LOC105371045A0A1W2PR82 267 aa23.79■■□□□ 1.4
MSH5-201ENST00000375703 SCRIBQ14160 1630 aa23.77■■□□□ 1.4
MSH5-201ENST00000375703 RSF1Q96T23 1441 aaPredicted RBP23.71■■□□□ 1.39
MSH5-201ENST00000375703 TRIM41Q8WV44 630 aa23.46■■□□□ 1.35
MSH5-201ENST00000375703 NACADO15069 1562 aa23.45■■□□□ 1.35
MSH5-201ENST00000375703 RB1CC1Q8TDY2 1594 aa23.44■■□□□ 1.34
MSH5-201ENST00000375703 TRIM26Q12899 539 aaPredicted RBP23.39■■□□□ 1.33
MSH5-201ENST00000375703 PPARGC1BQ86YN6 1023 aaKnown RBP23.34■■□□□ 1.33
MSH5-201ENST00000375703 CECR2Q9BXF3 1484 aa23.32■■□□□ 1.32
MSH5-201ENST00000375703 FAM9AQ8IZU1 332 aaPredicted RBP23.24■■□□□ 1.31
MSH5-201ENST00000375703 MROH2BQ7Z745 1585 aa23.24■■□□□ 1.31
MSH5-201ENST00000375703 WIZO95785 1651 aa23.1■■□□□ 1.29
MSH5-201ENST00000375703 EHMT2Q96KQ7 1210 aa23.03■■□□□ 1.28
MSH5-201ENST00000375703 BAZ1AQ9NRL2 1556 aaPredicted RBP22.95■■□□□ 1.26
MSH5-201ENST00000375703 ZEB1P37275 1124 aaPredicted RBP22.94■■□□□ 1.26
MSH5-201ENST00000375703 EIF4G1Q04637 1599 aaKnown RBP22.78■■□□□ 1.24
MSH5-201ENST00000375703 TOP2AP11388 1531 aaKnown RBP22.75■■□□□ 1.23
MSH5-201ENST00000375703 SMARCA4P51532 1647 aa22.72■■□□□ 1.23
MSH5-201ENST00000375703 CCDC88BA6NC98 1476 aa22.7■■□□□ 1.22
MSH5-201ENST00000375703 UNC13AQ9UPW8 1703 aa22.62■■□□□ 1.21
MSH5-201ENST00000375703 SMARCA2P51531 1590 aa22.62■■□□□ 1.21
MSH5-201ENST00000375703 ABCC8Q09428 1581 aa22.62■■□□□ 1.21
MSH5-201ENST00000375703 PABPN1Q86U42 306 aaKnown RBP eCLIP22.49■■□□□ 1.192e-6■■■□□ 15.7
MSH5-201ENST00000375703 SOGA1O94964 1423 aa22.46■■□□□ 1.19
MSH5-201ENST00000375703 CSRNP3Q8WYN3 585 aa22.42■■□□□ 1.18
MSH5-201ENST00000375703 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.41■■□□□ 1.18
MSH5-201ENST00000375703 WRNQ14191 1432 aaPredicted RBP eCLIP22.41■■□□□ 1.18
MSH5-201ENST00000375703 CEP162Q5TB80 1403 aa22.4■■□□□ 1.18
MSH5-201ENST00000375703 TNIKQ9UKE5 1360 aa22.4■■□□□ 1.18
MSH5-201ENST00000375703 EEA1Q15075 1411 aa22.39■■□□□ 1.18
MSH5-201ENST00000375703 BICRAQ9NZM4 1560 aa22.39■■□□□ 1.17
MSH5-201ENST00000375703 CCER1Q8TC90 406 aaPredicted RBP22.38■■□□□ 1.17
MSH5-201ENST00000375703 UBTFP17480 764 aaKnown RBP22.34■■□□□ 1.17
MSH5-201ENST00000375703 RUSC2Q8N2Y8 1516 aa22.34■■□□□ 1.17
MSH5-201ENST00000375703 TTBK1Q5TCY1 1321 aaPredicted RBP22.3■■□□□ 1.16
MSH5-201ENST00000375703 PEG3Q9GZU2 1588 aa22.29■■□□□ 1.16
MSH5-201ENST00000375703 GOLGA3Q08378 1498 aa22.22■■□□□ 1.15
MSH5-201ENST00000375703 ATAD2BQ9ULI0 1458 aa22.16■■□□□ 1.14
MSH5-201ENST00000375703 SYNJ1O43426 1573 aa22.1■■□□□ 1.13
MSH5-201ENST00000375703 BAZ1BQ9UIG0 1483 aaKnown RBP22.1■■□□□ 1.13
MSH5-201ENST00000375703 CEP164Q9UPV0 1460 aa22.09■■□□□ 1.13
MSH5-201ENST00000375703 SCAF1Q9H7N4 1312 aaKnown RBP22.03■■□□□ 1.12
MSH5-201ENST00000375703 KIF21BO75037 1637 aa22.02■■□□□ 1.12
MSH5-201ENST00000375703 DIEXFQ68CQ4 756 aaKnown RBP21.99■■□□□ 1.11
MSH5-201ENST00000375703 CLIP1P30622 1438 aa21.98■■□□□ 1.11
MSH5-201ENST00000375703 RAPGEF2Q9Y4G8 1499 aa21.9■■□□□ 1.1
MSH5-201ENST00000375703 APLP2Q06481 763 aa21.89■■□□□ 1.09
MSH5-201ENST00000375703 VPS8Q8N3P4 1428 aa21.89■■□□□ 1.09
MSH5-201ENST00000375703 HNRNPUL2Q1KMD3 747 aaKnown RBP21.88■■□□□ 1.09
MSH5-201ENST00000375703 TOP2BQ02880 1626 aa21.85■■□□□ 1.09
MSH5-201ENST00000375703 RANGAP1P46060 587 aaPredicted RBP21.85■■□□□ 1.09
MSH5-201ENST00000375703 ACIN1Q9UKV3 1341 aaKnown RBP21.84■■□□□ 1.09
MSH5-201ENST00000375703 ZNF316A6NFI3 1004 aaPredicted RBP21.81■■□□□ 1.08
MSH5-201ENST00000375703 NEUROD1Q13562 356 aa21.78■■□□□ 1.08
MSH5-201ENST00000375703 BIVM-ERCC5R4GMW8 1640 aa21.74■■□□□ 1.07
MSH5-201ENST00000375703 CENPBP07199 599 aaPredicted RBP21.73■■□□□ 1.07
MSH5-201ENST00000375703 NCAPD3P42695 1498 aa21.73■■□□□ 1.07
MSH5-201ENST00000375703 PELP1Q8IZL8 1130 aaKnown RBP21.71■■□□□ 1.07
MSH5-201ENST00000375703 PRXQ9BXM0 1461 aa21.69■■□□□ 1.06
MSH5-201ENST00000375703 HMGXB3Q12766 1538 aa21.68■■□□□ 1.06
MSH5-201ENST00000375703 ERICH3Q5RHP9 1530 aa21.67■■□□□ 1.06
MSH5-201ENST00000375703 CUX1P39880 1505 aa21.62■■□□□ 1.05
MSH5-201ENST00000375703 KIF27Q86VH2 1401 aa21.6■■□□□ 1.05
MSH5-201ENST00000375703 GTF3C3Q9Y5Q9 886 aa21.58■■□□□ 1.05
MSH5-201ENST00000375703 ARAP1Q96P48 1450 aa21.58■■□□□ 1.04
MSH5-201ENST00000375703 CFTRP13569 1480 aa21.57■■□□□ 1.04
MSH5-201ENST00000375703 KANK4Q5T7N3 995 aaPredicted RBP21.54■■□□□ 1.04
MSH5-201ENST00000375703 MIER1Q8N108 512 aa21.49■■□□□ 1.03
MSH5-201ENST00000375703 CLSPNQ9HAW4 1339 aa21.47■■□□□ 1.03
MSH5-201ENST00000375703 YTHDC1Q96MU7 727 aaKnown RBP21.44■■□□□ 1.02
MSH5-201ENST00000375703 DHX57Q6P158 1386 aaKnown RBP21.42■■□□□ 1.02
MSH5-201ENST00000375703 ARHGAP35Q9NRY4 1499 aa21.4■■□□□ 1.02
MSH5-201ENST00000375703 RRBP1Q9P2E9 1410 aaKnown RBP21.39■■□□□ 1.02
MSH5-201ENST00000375703 IGF1RP08069 1367 aa21.37■■□□□ 1.01
MSH5-201ENST00000375703 CUX2O14529 1486 aa21.35■■□□□ 1.01
MSH5-201ENST00000375703 CADPSQ9ULU8 1353 aa21.34■■□□□ 1.01
MSH5-201ENST00000375703 CCNB3Q8WWL7 1395 aa21.32■■□□□ 1
MSH5-201ENST00000375703 PRDM2Q13029 1718 aa21.29■■□□□ 1
MSH5-201ENST00000375703 CARMIL1Q5VZK9 1371 aa21.29■■□□□ 1
MSH5-201ENST00000375703 ITGAEP38570 1179 aa21.27■■□□□ 1
MSH5-201ENST00000375703 FGD5Q6ZNL6 1462 aa21.24■□□□□ 0.99
MSH5-201ENST00000375703 MAP3K1Q13233 1512 aa21.18■□□□□ 0.98
MSH5-201ENST00000375703 TIAM1Q13009 1591 aa21.16■□□□□ 0.98
MSH5-201ENST00000375703 RAB3GAP2Q9H2M9 1393 aa21.13■□□□□ 0.97
MSH5-201ENST00000375703 LRRC9Q6ZRR7 1453 aa21.12■□□□□ 0.97
MSH5-201ENST00000375703 P3H3Q8IVL6 736 aa21.11■□□□□ 0.97
MSH5-201ENST00000375703 FANCD2Q9BXW9 1451 aa21.11■□□□□ 0.97
MSH5-201ENST00000375703 FHAD1B1AJZ9 1412 aa21.1■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms