RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 NISCHQ9Y2I1 1504 aa20.7■□□□□ 0.9
MSH5-SAPCD1-207ENST00000493662 DCAF8L2P0C7V8 631 aa19.67■□□□□ 0.74
MSH5-SAPCD1-207ENST00000493662 SHROOM4Q9ULL8 1493 aa19.12■□□□□ 0.65
MSH5-SAPCD1-207ENST00000493662 SUPT5HO00267 1087 aaKnown RBP18.86■□□□□ 0.61
MSH5-SAPCD1-207ENST00000493662 EHMT2Q96KQ7 1210 aa18.09■□□□□ 0.49
MSH5-SAPCD1-207ENST00000493662 FAM9AQ8IZU1 332 aaPredicted RBP17.7■□□□□ 0.42
MSH5-SAPCD1-207ENST00000493662 ABCC9O60706 1549 aa17.63■□□□□ 0.41
MSH5-SAPCD1-207ENST00000493662 PELP1Q8IZL8 1130 aaKnown RBP17.39■□□□□ 0.38
MSH5-SAPCD1-207ENST00000493662 TTBK1Q5TCY1 1321 aaPredicted RBP17.33■□□□□ 0.36
MSH5-SAPCD1-207ENST00000493662 PABPN1Q86U42 306 aaKnown RBP eCLIP17.32■□□□□ 0.362e-6■■■□□ 15.7
MSH5-SAPCD1-207ENST00000493662 LOC105371045A0A1W2PR82 267 aa17.29■□□□□ 0.36
MSH5-SAPCD1-207ENST00000493662 CHIC1Q5VXU3 224 aa17.29■□□□□ 0.36
MSH5-SAPCD1-207ENST00000493662 TRIM41Q8WV44 630 aa17.26■□□□□ 0.35
MSH5-SAPCD1-207ENST00000493662 ZCCHC6Q5VYS8 1495 aaKnown RBP17.24■□□□□ 0.35
MSH5-SAPCD1-207ENST00000493662 PCGF6Q9BYE7 350 aa17.23■□□□□ 0.35
MSH5-SAPCD1-207ENST00000493662 RANGAP1P46060 587 aaPredicted RBP17.19■□□□□ 0.34
MSH5-SAPCD1-207ENST00000493662 PPARGC1BQ86YN6 1023 aaKnown RBP17.16■□□□□ 0.34
MSH5-SAPCD1-207ENST00000493662 CCDC180Q9P1Z9 1646 aa17.02■□□□□ 0.32
MSH5-SAPCD1-207ENST00000493662 SCRIBQ14160 1630 aa17.01■□□□□ 0.31
MSH5-SAPCD1-207ENST00000493662 MYT1Q01538 1121 aa17■□□□□ 0.31
MSH5-SAPCD1-207ENST00000493662 HRCP23327 699 aa16.95■□□□□ 0.3
MSH5-SAPCD1-207ENST00000493662 UBTFP17480 764 aaKnown RBP16.81■□□□□ 0.28
MSH5-SAPCD1-207ENST00000493662 MYO15BQ96JP2 1530 aa16.64■□□□□ 0.25
MSH5-SAPCD1-207ENST00000493662 ATP1B4Q9UN42 357 aaPredicted RBP16.57■□□□□ 0.24
MSH5-SAPCD1-207ENST00000493662 CECR2Q9BXF3 1484 aa16.57■□□□□ 0.24
MSH5-SAPCD1-207ENST00000493662 RSF1Q96T23 1441 aaPredicted RBP16.55■□□□□ 0.24
MSH5-SAPCD1-207ENST00000493662 APLP2Q06481 763 aa16.53■□□□□ 0.24
MSH5-SAPCD1-207ENST00000493662 CENPBP07199 599 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-207ENST00000493662 TRIM26Q12899 539 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-207ENST00000493662 CCER1Q8TC90 406 aaPredicted RBP16.41■□□□□ 0.22
MSH5-SAPCD1-207ENST00000493662 ZEB1P37275 1124 aaPredicted RBP16.39■□□□□ 0.21
MSH5-SAPCD1-207ENST00000493662 ITGAEP38570 1179 aa16.32■□□□□ 0.2
MSH5-SAPCD1-207ENST00000493662 DCAF1Q9Y4B6 1507 aa16.32■□□□□ 0.2
MSH5-SAPCD1-207ENST00000493662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.31■□□□□ 0.2
MSH5-SAPCD1-207ENST00000493662 RB1CC1Q8TDY2 1594 aa16.31■□□□□ 0.2
MSH5-SAPCD1-207ENST00000493662 HNRNPUL2Q1KMD3 747 aaKnown RBP16.31■□□□□ 0.2
MSH5-SAPCD1-207ENST00000493662 NACADO15069 1562 aa16.29■□□□□ 0.2
MSH5-SAPCD1-207ENST00000493662 MROH2BQ7Z745 1585 aa16.27■□□□□ 0.2
MSH5-SAPCD1-207ENST00000493662 CSRNP3Q8WYN3 585 aa16.18■□□□□ 0.18
MSH5-SAPCD1-207ENST00000493662 P3H3Q8IVL6 736 aa16.14■□□□□ 0.17
MSH5-SAPCD1-207ENST00000493662 WIZO95785 1651 aa16.09■□□□□ 0.17
MSH5-SAPCD1-207ENST00000493662 SCAF1Q9H7N4 1312 aaKnown RBP16.07■□□□□ 0.16
MSH5-SAPCD1-207ENST00000493662 ARID3CA6NKF2 412 aa16.04■□□□□ 0.16
MSH5-SAPCD1-207ENST00000493662 YTHDC1Q96MU7 727 aaKnown RBP16.03■□□□□ 0.16
MSH5-SAPCD1-207ENST00000493662 GTF3C3Q9Y5Q9 886 aa16.01■□□□□ 0.15
MSH5-SAPCD1-207ENST00000493662 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
MSH5-SAPCD1-207ENST00000493662 BAZ1AQ9NRL2 1556 aaPredicted RBP15.97■□□□□ 0.15
MSH5-SAPCD1-207ENST00000493662 SOGA1O94964 1423 aa15.95■□□□□ 0.14
MSH5-SAPCD1-207ENST00000493662 CCDC88BA6NC98 1476 aa15.94■□□□□ 0.14
MSH5-SAPCD1-207ENST00000493662 FBLN2P98095 1184 aa15.92■□□□□ 0.14
MSH5-SAPCD1-207ENST00000493662 BAZ1BQ9UIG0 1483 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-207ENST00000493662 ACIN1Q9UKV3 1341 aaKnown RBP15.91■□□□□ 0.14
MSH5-SAPCD1-207ENST00000493662 FAM50AQ14320 339 aaKnown RBP15.85■□□□□ 0.13
MSH5-SAPCD1-207ENST00000493662 WRNQ14191 1432 aaPredicted RBP eCLIP15.84■□□□□ 0.13
MSH5-SAPCD1-207ENST00000493662 RUSC2Q8N2Y8 1516 aa15.77■□□□□ 0.12
MSH5-SAPCD1-207ENST00000493662 DIEXFQ68CQ4 756 aaKnown RBP15.75■□□□□ 0.11
MSH5-SAPCD1-207ENST00000493662 CEP162Q5TB80 1403 aa15.73■□□□□ 0.11
MSH5-SAPCD1-207ENST00000493662 NEUROD1Q13562 356 aa15.73■□□□□ 0.11
MSH5-SAPCD1-207ENST00000493662 ERICH6Q7L0X2 663 aa15.73■□□□□ 0.11
MSH5-SAPCD1-207ENST00000493662 CNGB1Q14028 1251 aaPredicted RBP15.71■□□□□ 0.11
MSH5-SAPCD1-207ENST00000493662 SMARCA4P51532 1647 aa15.7■□□□□ 0.1
MSH5-SAPCD1-207ENST00000493662 ATAD2BQ9ULI0 1458 aa15.67■□□□□ 0.1
MSH5-SAPCD1-207ENST00000493662 CLIP1P30622 1438 aa15.65■□□□□ 0.1
MSH5-SAPCD1-207ENST00000493662 DNAJC5BQ9UF47 199 aa15.64■□□□□ 0.09
MSH5-SAPCD1-207ENST00000493662 TOP2AP11388 1531 aaKnown RBP15.64■□□□□ 0.09
MSH5-SAPCD1-207ENST00000493662 GOLGA3Q08378 1498 aa15.54■□□□□ 0.08
MSH5-SAPCD1-207ENST00000493662 SMARCA2P51531 1590 aa15.54■□□□□ 0.08
MSH5-SAPCD1-207ENST00000493662 POLR3GLQ9BT43 218 aa15.53■□□□□ 0.08
MSH5-SAPCD1-207ENST00000493662 TNIKQ9UKE5 1360 aa15.52■□□□□ 0.08
MSH5-SAPCD1-207ENST00000493662 TRIM52Q96A61 297 aa15.51■□□□□ 0.07
MSH5-SAPCD1-207ENST00000493662 CHIC2Q9UKJ5 165 aa15.51■□□□□ 0.07
MSH5-SAPCD1-207ENST00000493662 KANK4Q5T7N3 995 aaPredicted RBP15.5■□□□□ 0.07
MSH5-SAPCD1-207ENST00000493662 MYT1LQ9UL68 1186 aa15.5■□□□□ 0.07
MSH5-SAPCD1-207ENST00000493662 ZNF777Q9ULD5 760 aaPredicted RBP15.49■□□□□ 0.07
MSH5-SAPCD1-207ENST00000493662 CUX2O14529 1486 aa15.48■□□□□ 0.07
MSH5-SAPCD1-207ENST00000493662 TDRD9Q8NDG6 1382 aaKnown RBP15.47■□□□□ 0.07
MSH5-SAPCD1-207ENST00000493662 BICRAQ9NZM4 1560 aa15.47■□□□□ 0.07
MSH5-SAPCD1-207ENST00000493662 KIF27Q86VH2 1401 aa15.45■□□□□ 0.06
MSH5-SAPCD1-207ENST00000493662 RAPGEF2Q9Y4G8 1499 aa15.45■□□□□ 0.06
MSH5-SAPCD1-207ENST00000493662 HIRIP3Q9BW71 556 aaPredicted RBP15.44■□□□□ 0.06
MSH5-SAPCD1-207ENST00000493662 CEP164Q9UPV0 1460 aa15.43■□□□□ 0.06
MSH5-SAPCD1-207ENST00000493662 NEFLP07196 543 aa15.43■□□□□ 0.06
MSH5-SAPCD1-207ENST00000493662 EEA1Q15075 1411 aa15.41■□□□□ 0.06
MSH5-SAPCD1-207ENST00000493662 ZNF326Q5BKZ1 582 aaKnown RBP15.39■□□□□ 0.05
MSH5-SAPCD1-207ENST00000493662 BCL11AQ9H165 835 aa15.39■□□□□ 0.05
MSH5-SAPCD1-207ENST00000493662 CARMIL1Q5VZK9 1371 aa15.37■□□□□ 0.05
MSH5-SAPCD1-207ENST00000493662 CADPSQ9ULU8 1353 aa15.37■□□□□ 0.05
MSH5-SAPCD1-207ENST00000493662 EIF4G1Q04637 1599 aaKnown RBP15.37■□□□□ 0.05
MSH5-SAPCD1-207ENST00000493662 CHMP7Q8WUX9 453 aaPredicted RBP15.37■□□□□ 0.05
MSH5-SAPCD1-207ENST00000493662 UNC13AQ9UPW8 1703 aa15.35■□□□□ 0.05
MSH5-SAPCD1-207ENST00000493662 ZNF316A6NFI3 1004 aaPredicted RBP15.34■□□□□ 0.05
MSH5-SAPCD1-207ENST00000493662 NESP48681 1621 aa15.32■□□□□ 0.04
MSH5-SAPCD1-207ENST00000493662 RRP7BPQ9NSQ0 103 aa15.32■□□□□ 0.04
MSH5-SAPCD1-207ENST00000493662 SYNJ1O43426 1573 aa15.28■□□□□ 0.04
MSH5-SAPCD1-207ENST00000493662 MTUS2Q5JR59 1369 aa15.28■□□□□ 0.04
MSH5-SAPCD1-207ENST00000493662 RAD54L2Q9Y4B4 1467 aa15.27■□□□□ 0.03
MSH5-SAPCD1-207ENST00000493662 BCANQ96GW7 911 aa15.26■□□□□ 0.03
MSH5-SAPCD1-207ENST00000493662 ANP32EQ9BTT0 268 aa15.26■□□□□ 0.03
MSH5-SAPCD1-207ENST00000493662 SIN3AQ96ST3 1273 aa15.25■□□□□ 0.03
MSH5-SAPCD1-207ENST00000493662 NCAPD3P42695 1498 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms