RNA–Protein interactions for RNA: ENST00000561395.5

TPM1-231, Transcript of tropomyosin 1, human

TSL 5

Gene TPM1, Length 673 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-231	ENST00000561395	NISCH	Q9Y2I1	1504 aa		17.57	■□□□□ 0.4
TPM1-231	ENST00000561395	AEBP2	Q6ZN18	517 aa	Predicted RBP	16.76	■□□□□ 0.27
TPM1-231	ENST00000561395	CHIC1	Q5VXU3	224 aa		16.45	■□□□□ 0.22
TPM1-231	ENST00000561395	ABCC9	O60706	1549 aa		16.41	■□□□□ 0.22
TPM1-231	ENST00000561395	CCDC180	Q9P1Z9	1646 aa		16.11	■□□□□ 0.17
TPM1-231	ENST00000561395	DNAJC5B	Q9UF47	199 aa		15.72	■□□□□ 0.11
TPM1-231	ENST00000561395	RB1CC1	Q8TDY2	1594 aa		15.48	■□□□□ 0.07
TPM1-231	ENST00000561395	UNC13A	Q9UPW8	1703 aa		15.3	■□□□□ 0.04
TPM1-231	ENST00000561395	NACAD	O15069	1562 aa		15.24	■□□□□ 0.03
TPM1-231	ENST00000561395	PABPN1	Q86U42	306 aa	Known RBP eCLIP	15.13	■□□□□ 0.01
TPM1-231	ENST00000561395	BICRA	Q9NZM4	1560 aa		15.06	■□□□□ 0
TPM1-231	ENST00000561395	DCAF8L2	P0C7V8	631 aa		14.9	□□□□□ -0.02
TPM1-231	ENST00000561395	CC2D2A	Q9P2K1	1620 aa		14.88	□□□□□ -0.03
TPM1-231	ENST00000561395	MYO15B	Q96JP2	1530 aa		14.85	□□□□□ -0.03
TPM1-231	ENST00000561395	CECR2	Q9BXF3	1484 aa		14.83	□□□□□ -0.03
TPM1-231	ENST00000561395	SHROOM4	Q9ULL8	1493 aa		14.77	□□□□□ -0.04
TPM1-231	ENST00000561395	DNAJC5	Q9H3Z4	198 aa		14.77	□□□□□ -0.05
TPM1-231	ENST00000561395	EIF4G1	Q04637	1599 aa	Known RBP	14.72	□□□□□ -0.05
TPM1-231	ENST00000561395	SCRIB	Q14160	1630 aa		14.59	□□□□□ -0.07
TPM1-231	ENST00000561395	PHF23	Q9BUL5	403 aa	Predicted RBP	14.54	□□□□□ -0.08
TPM1-231	ENST00000561395	DCAF1	Q9Y4B6	1507 aa		14.49	□□□□□ -0.09
TPM1-231	ENST00000561395	ZCCHC6	Q5VYS8	1495 aa	Known RBP	14.49	□□□□□ -0.09
TPM1-231	ENST00000561395	CUX2	O14529	1486 aa		14.36	□□□□□ -0.11
TPM1-231	ENST00000561395	ERCC6	Q03468	1493 aa		14.21	□□□□□ -0.13
TPM1-231	ENST00000561395	SENP3	Q9H4L4	574 aa	Predicted RBP	14.12	□□□□□ -0.15
TPM1-231	ENST00000561395	THOC2	Q8NI27	1593 aa	Known RBP	14.03	□□□□□ -0.16
TPM1-231	ENST00000561395	NCAPD3	P42695	1498 aa		14	□□□□□ -0.17
TPM1-231	ENST00000561395	NES	P48681	1621 aa		13.99	□□□□□ -0.17
TPM1-231	ENST00000561395	TRIM41	Q8WV44	630 aa		13.96	□□□□□ -0.17
TPM1-231	ENST00000561395	HMGXB3	Q12766	1538 aa		13.95	□□□□□ -0.18
TPM1-231	ENST00000561395	KIF21A	Q7Z4S6	1674 aa		13.93	□□□□□ -0.18
TPM1-231	ENST00000561395	ATAD2B	Q9ULI0	1458 aa		13.92	□□□□□ -0.18
TPM1-231	ENST00000561395	SMARCA2	P51531	1590 aa		13.9	□□□□□ -0.18
TPM1-231	ENST00000561395	SMARCA4	P51532	1647 aa		13.88	□□□□□ -0.19
TPM1-231	ENST00000561395	LAMC3	Q9Y6N6	1575 aa		13.85	□□□□□ -0.19
TPM1-231	ENST00000561395	BAZ1B	Q9UIG0	1483 aa	Known RBP	13.78	□□□□□ -0.2
TPM1-231	ENST00000561395	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	13.75	□□□□□ -0.21
TPM1-231	ENST00000561395	PEG3	Q9GZU2	1588 aa		13.72	□□□□□ -0.21
TPM1-231	ENST00000561395	PDS5B	Q9NTI5	1447 aa		13.7	□□□□□ -0.22
TPM1-231	ENST00000561395	WDR62	O43379	1518 aa		13.68	□□□□□ -0.22
TPM1-231	ENST00000561395	MRC2	Q9UBG0	1479 aa		13.66	□□□□□ -0.22
TPM1-231	ENST00000561395	RIMBP3C	A6NJZ7	1639 aa		13.57	□□□□□ -0.24
TPM1-231	ENST00000561395	RIMBP3B	A6NNM3	1639 aa		13.57	□□□□□ -0.24
TPM1-231	ENST00000561395	RIMBP3	Q9UFD9	1639 aa		13.57	□□□□□ -0.24
TPM1-231	ENST00000561395	MROH2B	Q7Z745	1585 aa		13.54	□□□□□ -0.24
TPM1-231	ENST00000561395	CADPS	Q9ULU8	1353 aa		13.54	□□□□□ -0.24
TPM1-231	ENST00000561395	OSCAR	Q8IYS5	282 aa		13.52	□□□□□ -0.25
TPM1-231	ENST00000561395	CEP164	Q9UPV0	1460 aa		13.52	□□□□□ -0.25
TPM1-231	ENST00000561395	FANCD2	Q9BXW9	1451 aa		13.43	□□□□□ -0.26
TPM1-231	ENST00000561395	WIZ	O95785	1651 aa		13.43	□□□□□ -0.26
TPM1-231	ENST00000561395	PLPPR3	Q6T4P5	718 aa		13.42	□□□□□ -0.26
TPM1-231	ENST00000561395	ARHGEF11	O15085	1522 aa		13.42	□□□□□ -0.26
TPM1-231	ENST00000561395	PRDM2	Q13029	1718 aa		13.4	□□□□□ -0.26
TPM1-231	ENST00000561395	URB2	Q14146	1524 aa	Known RBP	13.38	□□□□□ -0.27
TPM1-231	ENST00000561395	CHD1	O14646	1710 aa		13.33	□□□□□ -0.28
TPM1-231	ENST00000561395	CFTR	P13569	1480 aa		13.32	□□□□□ -0.28
TPM1-231	ENST00000561395	SUPT5H	O00267	1087 aa	Known RBP	13.32	□□□□□ -0.28
TPM1-231	ENST00000561395	ZNF608	Q9ULD9	1512 aa	Predicted RBP	13.27	□□□□□ -0.29
TPM1-231	ENST00000561395	EIF4G3	O43432	1585 aa	Known RBP	13.27	□□□□□ -0.29
TPM1-231	ENST00000561395	RSF1	Q96T23	1441 aa	Predicted RBP	13.26	□□□□□ -0.29
TPM1-231	ENST00000561395	ARAP1	Q96P48	1450 aa		13.25	□□□□□ -0.29
TPM1-231	ENST00000561395	TRH	P20396	242 aa	Predicted RBP	13.25	□□□□□ -0.29
TPM1-231	ENST00000561395	CYB5RL	Q6IPT4	315 aa		13.24	□□□□□ -0.29
TPM1-231	ENST00000561395	IFT140	Q96RY7	1462 aa		13.23	□□□□□ -0.29
TPM1-231	ENST00000561395	TOP2A	P11388	1531 aa	Known RBP	13.18	□□□□□ -0.3
TPM1-231	ENST00000561395	TOPBP1	Q92547	1522 aa		13.14	□□□□□ -0.31
TPM1-231	ENST00000561395	FOXD1	Q16676	465 aa		13.14	□□□□□ -0.31
TPM1-231	ENST00000561395	TARBP1	Q13395	1621 aa	Known RBP	13.12	□□□□□ -0.31
TPM1-231	ENST00000561395	DNMBP	Q6XZF7	1577 aa		13.1	□□□□□ -0.31
TPM1-231	ENST00000561395	AQR	O60306	1485 aa	Known RBP eCLIP	13.06	□□□□□ -0.32	1e-12	■■■■□ 23
TPM1-231	ENST00000561395	ABCC8	Q09428	1581 aa		13.06	□□□□□ -0.32
TPM1-231	ENST00000561395	CLASP1	Q7Z460	1538 aa		13.05	□□□□□ -0.32
TPM1-231	ENST00000561395	FBLN2	P98095	1184 aa		13.02	□□□□□ -0.33
TPM1-231	ENST00000561395	SYNJ1	O43426	1573 aa		13.01	□□□□□ -0.33
TPM1-231	ENST00000561395	CCDC88B	A6NC98	1476 aa		12.97	□□□□□ -0.33
TPM1-231	ENST00000561395	POLA1	P09884	1462 aa	Predicted RBP	12.97	□□□□□ -0.33
TPM1-231	ENST00000561395	SNAPC4	Q5SXM2	1469 aa		12.97	□□□□□ -0.33
TPM1-231	ENST00000561395	WDR97	A6NE52	1622 aa		12.96	□□□□□ -0.33
TPM1-231	ENST00000561395	PBRM1	Q86U86	1689 aa		12.93	□□□□□ -0.34
TPM1-231	ENST00000561395	RAD54L2	Q9Y4B4	1467 aa		12.91	□□□□□ -0.34
TPM1-231	ENST00000561395	KIF13A	Q9H1H9	1805 aa		12.91	□□□□□ -0.34
TPM1-231	ENST00000561395	MAGI1	Q96QZ7	1491 aa	Predicted RBP	12.91	□□□□□ -0.34
TPM1-231	ENST00000561395	GAPVD1	Q14C86	1478 aa		12.89	□□□□□ -0.35
TPM1-231	ENST00000561395	TDRD9	Q8NDG6	1382 aa	Known RBP	12.88	□□□□□ -0.35
TPM1-231	ENST00000561395	SYNJ2	O15056	1496 aa		12.85	□□□□□ -0.35
TPM1-231	ENST00000561395	SOGA1	O94964	1423 aa		12.85	□□□□□ -0.35
TPM1-231	ENST00000561395	CHMP7	Q8WUX9	453 aa	Predicted RBP	12.84	□□□□□ -0.35
TPM1-231	ENST00000561395	GRIN2B	Q13224	1484 aa		12.84	□□□□□ -0.35
TPM1-231	ENST00000561395	FGD5	Q6ZNL6	1462 aa		12.84	□□□□□ -0.35
TPM1-231	ENST00000561395	ADRA2B	P18089	450 aa		12.82	□□□□□ -0.36
TPM1-231	ENST00000561395	ERCC6L2	Q5T890	1561 aa		12.81	□□□□□ -0.36
TPM1-231	ENST00000561395	PPP6R1	Q9UPN7	881 aa		12.8	□□□□□ -0.36
TPM1-231	ENST00000561395	CUX1	P39880	1505 aa		12.77	□□□□□ -0.37
TPM1-231	ENST00000561395	ABCA5	Q8WWZ7	1642 aa		12.76	□□□□□ -0.37
TPM1-231	ENST00000561395	CEP170	Q5SW79	1584 aa		12.75	□□□□□ -0.37
TPM1-231	ENST00000561395	SHROOM2	Q13796	1616 aa		12.73	□□□□□ -0.37
TPM1-231	ENST00000561395	ILDR1	Q86SU0	546 aa	Predicted RBP	12.7	□□□□□ -0.38
TPM1-231	ENST00000561395	ADAMTS12	P58397	1594 aa		12.69	□□□□□ -0.38
TPM1-231	ENST00000561395	GRIN2A	Q12879	1464 aa		12.69	□□□□□ -0.38
TPM1-231	ENST00000561395	TSPOAP1	O95153	1857 aa		12.67	□□□□□ -0.38

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