RNA–Protein interactions for RNA: ENST00000317516.11

TPM1-203, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 738 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-203ENST00000317516 NISCHQ9Y2I1 1504 aa43.68■■■■■ 4.58
TPM1-203ENST00000317516 CCDC180Q9P1Z9 1646 aa38.94■■■■□ 3.82
TPM1-203ENST00000317516 ABCC9O60706 1549 aa38.75■■■■□ 3.79
TPM1-203ENST00000317516 RB1CC1Q8TDY2 1594 aa37.02■■■■□ 3.52
TPM1-203ENST00000317516 DCAF8L2P0C7V8 631 aa36.93■■■■□ 3.5
TPM1-203ENST00000317516 NACADO15069 1562 aa36.86■■■■□ 3.49
TPM1-203ENST00000317516 MYO15BQ96JP2 1530 aa36.48■■■■□ 3.43
TPM1-203ENST00000317516 ZCCHC6Q5VYS8 1495 aaKnown RBP36.24■■■■□ 3.39
TPM1-203ENST00000317516 PABPN1Q86U42 306 aaKnown RBP eCLIP36.21■■■■□ 3.39
TPM1-203ENST00000317516 DCAF1Q9Y4B6 1507 aa36.11■■■■□ 3.37
TPM1-203ENST00000317516 DNAJC5BQ9UF47 199 aa36.09■■■■□ 3.37
TPM1-203ENST00000317516 UNC13AQ9UPW8 1703 aa35.92■■■■□ 3.34
TPM1-203ENST00000317516 BICRAQ9NZM4 1560 aa35.82■■■■□ 3.32
TPM1-203ENST00000317516 SCRIBQ14160 1630 aa35.53■■■■□ 3.28
TPM1-203ENST00000317516 SHROOM4Q9ULL8 1493 aa35.51■■■■□ 3.28
TPM1-203ENST00000317516 EIF4G1Q04637 1599 aaKnown RBP34.98■■■■□ 3.19
TPM1-203ENST00000317516 CC2D2AQ9P2K1 1620 aa34.95■■■■□ 3.18
TPM1-203ENST00000317516 CECR2Q9BXF3 1484 aa34.9■■■■□ 3.18
TPM1-203ENST00000317516 NCAPD3P42695 1498 aa34.07■■■■□ 3.05
TPM1-203ENST00000317516 ATAD2BQ9ULI0 1458 aa33.98■■■■□ 3.03
TPM1-203ENST00000317516 SMARCA4P51532 1647 aa33.93■■■■□ 3.02
TPM1-203ENST00000317516 SMARCA2P51531 1590 aa33.9■■■■□ 3.02
TPM1-203ENST00000317516 BAZ1AQ9NRL2 1556 aaPredicted RBP33.89■■■■□ 3.02
TPM1-203ENST00000317516 HMGXB3Q12766 1538 aa33.76■■■■□ 3
TPM1-203ENST00000317516 BAZ1BQ9UIG0 1483 aaKnown RBP33.68■■■□□ 2.98
TPM1-203ENST00000317516 MROH2BQ7Z745 1585 aa33.63■■■□□ 2.97
TPM1-203ENST00000317516 PEG3Q9GZU2 1588 aa33.62■■■□□ 2.97
TPM1-203ENST00000317516 ERCC6Q03468 1493 aa33.5■■■□□ 2.95
TPM1-203ENST00000317516 NESP48681 1621 aa33.33■■■□□ 2.93
TPM1-203ENST00000317516 CUX2O14529 1486 aa33.3■■■□□ 2.92
TPM1-203ENST00000317516 LAMC3Q9Y6N6 1575 aa33.18■■■□□ 2.9
TPM1-203ENST00000317516 WIZO95785 1651 aa33.17■■■□□ 2.9
TPM1-203ENST00000317516 RSF1Q96T23 1441 aaPredicted RBP33.12■■■□□ 2.89
TPM1-203ENST00000317516 PDS5BQ9NTI5 1447 aa33.11■■■□□ 2.89
TPM1-203ENST00000317516 CADPSQ9ULU8 1353 aa33.09■■■□□ 2.89
TPM1-203ENST00000317516 DNAJC5Q9H3Z4 198 aa33■■■□□ 2.87
TPM1-203ENST00000317516 THOC2Q8NI27 1593 aaKnown RBP32.84■■■□□ 2.85
TPM1-203ENST00000317516 TOP2AP11388 1531 aaKnown RBP32.84■■■□□ 2.85
TPM1-203ENST00000317516 KIF21AQ7Z4S6 1674 aa32.78■■■□□ 2.84
TPM1-203ENST00000317516 CFTRP13569 1480 aa32.73■■■□□ 2.83
TPM1-203ENST00000317516 MRC2Q9UBG0 1479 aa32.71■■■□□ 2.83
TPM1-203ENST00000317516 FANCD2Q9BXW9 1451 aa32.66■■■□□ 2.82
TPM1-203ENST00000317516 CEP164Q9UPV0 1460 aa32.66■■■□□ 2.82
TPM1-203ENST00000317516 WDR62O43379 1518 aa32.56■■■□□ 2.8
TPM1-203ENST00000317516 CCDC88BA6NC98 1476 aa32.52■■■□□ 2.8
TPM1-203ENST00000317516 URB2Q14146 1524 aaKnown RBP32.3■■■□□ 2.76
TPM1-203ENST00000317516 PRDM2Q13029 1718 aa32.17■■■□□ 2.74
TPM1-203ENST00000317516 ABCC8Q09428 1581 aa32.09■■■□□ 2.73
TPM1-203ENST00000317516 TOPBP1Q92547 1522 aa32.04■■■□□ 2.72
TPM1-203ENST00000317516 IFT140Q96RY7 1462 aa32.02■■■□□ 2.72
TPM1-203ENST00000317516 SUPT5HO00267 1087 aaKnown RBP32.01■■■□□ 2.71
TPM1-203ENST00000317516 OSCARQ8IYS5 282 aa31.97■■■□□ 2.71
TPM1-203ENST00000317516 DNMBPQ6XZF7 1577 aa31.92■■■□□ 2.7
TPM1-203ENST00000317516 ZNF608Q9ULD9 1512 aaPredicted RBP31.86■■■□□ 2.69
TPM1-203ENST00000317516 POLA1P09884 1462 aaPredicted RBP31.73■■■□□ 2.67
TPM1-203ENST00000317516 SOGA1O94964 1423 aa31.69■■■□□ 2.66
TPM1-203ENST00000317516 TRIM41Q8WV44 630 aa31.68■■■□□ 2.66
TPM1-203ENST00000317516 AQRO60306 1485 aaKnown RBP eCLIP31.67■■■□□ 2.661e-12■■■■□ 23
TPM1-203ENST00000317516 TARBP1Q13395 1621 aaKnown RBP31.65■■■□□ 2.66
TPM1-203ENST00000317516 EIF4G3O43432 1585 aaKnown RBP31.63■■■□□ 2.65
TPM1-203ENST00000317516 RAD54L2Q9Y4B4 1467 aa31.61■■■□□ 2.65
TPM1-203ENST00000317516 FGD5Q6ZNL6 1462 aa31.58■■■□□ 2.65
TPM1-203ENST00000317516 TDRD9Q8NDG6 1382 aaKnown RBP31.57■■■□□ 2.64
TPM1-203ENST00000317516 CUX1P39880 1505 aa31.56■■■□□ 2.64
TPM1-203ENST00000317516 FBLN2P98095 1184 aa31.52■■■□□ 2.64
TPM1-203ENST00000317516 WDR97A6NE52 1622 aa31.42■■■□□ 2.62
TPM1-203ENST00000317516 CHMP7Q8WUX9 453 aaPredicted RBP31.36■■■□□ 2.61
TPM1-203ENST00000317516 GRIN2BQ13224 1484 aa31.34■■■□□ 2.61
TPM1-203ENST00000317516 SNAPC4Q5SXM2 1469 aa31.32■■■□□ 2.6
TPM1-203ENST00000317516 MAGI1Q96QZ7 1491 aaPredicted RBP31.29■■■□□ 2.6
TPM1-203ENST00000317516 WRNQ14191 1432 aaPredicted RBP eCLIP31.28■■■□□ 2.6
TPM1-203ENST00000317516 ARHGEF11O15085 1522 aa31.27■■■□□ 2.6
TPM1-203ENST00000317516 GAPVD1Q14C86 1478 aa31.27■■■□□ 2.6
TPM1-203ENST00000317516 CHD1O14646 1710 aa31.27■■■□□ 2.6
TPM1-203ENST00000317516 ABCA10Q8WWZ4 1543 aa31.26■■■□□ 2.59
TPM1-203ENST00000317516 RIMBP3CA6NJZ7 1639 aa31.26■■■□□ 2.59
TPM1-203ENST00000317516 RIMBP3BA6NNM3 1639 aa31.26■■■□□ 2.59
TPM1-203ENST00000317516 RIMBP3Q9UFD9 1639 aa31.26■■■□□ 2.59
TPM1-203ENST00000317516 CYB5RLQ6IPT4 315 aa31.18■■■□□ 2.58
TPM1-203ENST00000317516 SYNJ2O15056 1496 aa31.18■■■□□ 2.58
TPM1-203ENST00000317516 TOP2BQ02880 1626 aa31.15■■■□□ 2.58
TPM1-203ENST00000317516 BIVM-ERCC5R4GMW8 1640 aa31.09■■■□□ 2.57
TPM1-203ENST00000317516 SYNJ1O43426 1573 aa31.09■■■□□ 2.57
TPM1-203ENST00000317516 ABCA5Q8WWZ7 1642 aa31.07■■■□□ 2.56
TPM1-203ENST00000317516 PBRM1Q86U86 1689 aa31.03■■■□□ 2.56
TPM1-203ENST00000317516 CLASP1Q7Z460 1538 aa31.01■■■□□ 2.55
TPM1-203ENST00000317516 ARAP1Q96P48 1450 aa30.97■■■□□ 2.55
TPM1-203ENST00000317516 FHAD1B1AJZ9 1412 aa30.91■■■□□ 2.54
TPM1-203ENST00000317516 GRIN2AQ12879 1464 aa30.89■■■□□ 2.54
TPM1-203ENST00000317516 ERICH3Q5RHP9 1530 aa30.88■■■□□ 2.53
TPM1-203ENST00000317516 ADAMTS12P58397 1594 aa30.83■■■□□ 2.53
TPM1-203ENST00000317516 NUP160Q12769 1436 aa30.79■■■□□ 2.52
TPM1-203ENST00000317516 TRHP20396 242 aaPredicted RBP30.75■■■□□ 2.51
TPM1-203ENST00000317516 KIF27Q86VH2 1401 aa30.69■■■□□ 2.5
TPM1-203ENST00000317516 CEP170Q5SW79 1584 aa30.69■■■□□ 2.5
TPM1-203ENST00000317516 IGF1RP08069 1367 aa30.64■■■□□ 2.5
TPM1-203ENST00000317516 JPH4Q96JJ6 628 aa30.61■■■□□ 2.49
TPM1-203ENST00000317516 ERCC6L2Q5T890 1561 aa30.52■■■□□ 2.48
TPM1-203ENST00000317516 PRG4Q92954 1404 aaPredicted RBP30.51■■■□□ 2.47
TPM1-203ENST00000317516 SHROOM2Q13796 1616 aa30.51■■■□□ 2.47
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms