RNA–Protein interactions for RNA: ENST00000559108.1

TPM1-217, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-217ENST00000559108 NISCHQ9Y2I1 1504 aa26.44■■□□□ 1.82
TPM1-217ENST00000559108 CCDC180Q9P1Z9 1646 aa23.44■■□□□ 1.34
TPM1-217ENST00000559108 ABCC9O60706 1549 aa22.71■■□□□ 1.23
TPM1-217ENST00000559108 ZCCHC6Q5VYS8 1495 aaKnown RBP22.1■■□□□ 1.13
TPM1-217ENST00000559108 NACADO15069 1562 aa21.91■■□□□ 1.1
TPM1-217ENST00000559108 RB1CC1Q8TDY2 1594 aa21.87■■□□□ 1.09
TPM1-217ENST00000559108 DCAF1Q9Y4B6 1507 aa21.85■■□□□ 1.09
TPM1-217ENST00000559108 DCAF8L2P0C7V8 631 aa21.84■■□□□ 1.09
TPM1-217ENST00000559108 MYO15BQ96JP2 1530 aa21.83■■□□□ 1.09
TPM1-217ENST00000559108 UNC13AQ9UPW8 1703 aa21.61■■□□□ 1.05
TPM1-217ENST00000559108 SCRIBQ14160 1630 aa21.44■■□□□ 1.02
TPM1-217ENST00000559108 BICRAQ9NZM4 1560 aa21.37■■□□□ 1.01
TPM1-217ENST00000559108 PABPN1Q86U42 306 aaKnown RBP eCLIP21.21■□□□□ 0.99
TPM1-217ENST00000559108 SHROOM4Q9ULL8 1493 aa21.03■□□□□ 0.96
TPM1-217ENST00000559108 EIF4G1Q04637 1599 aaKnown RBP20.7■□□□□ 0.9
TPM1-217ENST00000559108 DNAJC5BQ9UF47 199 aa20.68■□□□□ 0.9
TPM1-217ENST00000559108 CECR2Q9BXF3 1484 aa20.64■□□□□ 0.89
TPM1-217ENST00000559108 CC2D2AQ9P2K1 1620 aa20.57■□□□□ 0.88
TPM1-217ENST00000559108 SMARCA4P51532 1647 aa20.51■□□□□ 0.87
TPM1-217ENST00000559108 MROH2BQ7Z745 1585 aa20.44■□□□□ 0.86
TPM1-217ENST00000559108 BAZ1AQ9NRL2 1556 aaPredicted RBP20.43■□□□□ 0.86
TPM1-217ENST00000559108 ATAD2BQ9ULI0 1458 aa20.29■□□□□ 0.84
TPM1-217ENST00000559108 PEG3Q9GZU2 1588 aa20.29■□□□□ 0.84
TPM1-217ENST00000559108 WIZO95785 1651 aa20.26■□□□□ 0.83
TPM1-217ENST00000559108 SMARCA2P51531 1590 aa20.23■□□□□ 0.83
TPM1-217ENST00000559108 RSF1Q96T23 1441 aaPredicted RBP20.23■□□□□ 0.83
TPM1-217ENST00000559108 NCAPD3P42695 1498 aa20.21■□□□□ 0.83
TPM1-217ENST00000559108 HMGXB3Q12766 1538 aa20.17■□□□□ 0.82
TPM1-217ENST00000559108 BAZ1BQ9UIG0 1483 aaKnown RBP20.1■□□□□ 0.81
TPM1-217ENST00000559108 TOP2AP11388 1531 aaKnown RBP19.98■□□□□ 0.79
TPM1-217ENST00000559108 SUPT5HO00267 1087 aaKnown RBP19.79■□□□□ 0.76
TPM1-217ENST00000559108 NESP48681 1621 aa19.77■□□□□ 0.76
TPM1-217ENST00000559108 CCDC88BA6NC98 1476 aa19.74■□□□□ 0.75
TPM1-217ENST00000559108 LAMC3Q9Y6N6 1575 aa19.65■□□□□ 0.74
TPM1-217ENST00000559108 CADPSQ9ULU8 1353 aa19.6■□□□□ 0.73
TPM1-217ENST00000559108 KIF21AQ7Z4S6 1674 aa19.59■□□□□ 0.73
TPM1-217ENST00000559108 CFTRP13569 1480 aa19.58■□□□□ 0.72
TPM1-217ENST00000559108 PRDM2Q13029 1718 aa19.56■□□□□ 0.72
TPM1-217ENST00000559108 THOC2Q8NI27 1593 aaKnown RBP19.44■□□□□ 0.7
TPM1-217ENST00000559108 ERCC6Q03468 1493 aa19.44■□□□□ 0.7
TPM1-217ENST00000559108 FANCD2Q9BXW9 1451 aa19.42■□□□□ 0.7
TPM1-217ENST00000559108 PDS5BQ9NTI5 1447 aa19.41■□□□□ 0.7
TPM1-217ENST00000559108 CEP164Q9UPV0 1460 aa19.35■□□□□ 0.69
TPM1-217ENST00000559108 MRC2Q9UBG0 1479 aa19.3■□□□□ 0.68
TPM1-217ENST00000559108 WDR62O43379 1518 aa19.29■□□□□ 0.68
TPM1-217ENST00000559108 URB2Q14146 1524 aaKnown RBP19.29■□□□□ 0.68
TPM1-217ENST00000559108 CUX2O14529 1486 aa19.17■□□□□ 0.66
TPM1-217ENST00000559108 TOPBP1Q92547 1522 aa19.17■□□□□ 0.66
TPM1-217ENST00000559108 ABCC8Q09428 1581 aa19.17■□□□□ 0.66
TPM1-217ENST00000559108 DNMBPQ6XZF7 1577 aa19.16■□□□□ 0.66
TPM1-217ENST00000559108 CUX1P39880 1505 aa19.15■□□□□ 0.66
TPM1-217ENST00000559108 SYNJ1O43426 1573 aa19.1■□□□□ 0.65
TPM1-217ENST00000559108 BIVM-ERCC5R4GMW8 1640 aa19.05■□□□□ 0.64
TPM1-217ENST00000559108 POLA1P09884 1462 aaPredicted RBP19.03■□□□□ 0.64
TPM1-217ENST00000559108 TOP2BQ02880 1626 aa19.02■□□□□ 0.64
TPM1-217ENST00000559108 FGD5Q6ZNL6 1462 aa19.02■□□□□ 0.63
TPM1-217ENST00000559108 WRNQ14191 1432 aaPredicted RBP eCLIP19.01■□□□□ 0.63
TPM1-217ENST00000559108 TARBP1Q13395 1621 aaKnown RBP19.01■□□□□ 0.63
TPM1-217ENST00000559108 RAD54L2Q9Y4B4 1467 aa18.97■□□□□ 0.63
TPM1-217ENST00000559108 WDR97A6NE52 1622 aa18.96■□□□□ 0.63
TPM1-217ENST00000559108 ZNF608Q9ULD9 1512 aaPredicted RBP18.94■□□□□ 0.62
TPM1-217ENST00000559108 IFT140Q96RY7 1462 aa18.92■□□□□ 0.62
TPM1-217ENST00000559108 EIF4G3O43432 1585 aaKnown RBP18.88■□□□□ 0.61
TPM1-217ENST00000559108 SOGA1O94964 1423 aa18.87■□□□□ 0.61
TPM1-217ENST00000559108 ABCA10Q8WWZ4 1543 aa18.81■□□□□ 0.6
TPM1-217ENST00000559108 AQRO60306 1485 aaKnown RBP eCLIP18.8■□□□□ 0.6
TPM1-217ENST00000559108 ABCA5Q8WWZ7 1642 aa18.8■□□□□ 0.6
TPM1-217ENST00000559108 TDRD9Q8NDG6 1382 aaKnown RBP18.78■□□□□ 0.6
TPM1-217ENST00000559108 PBRM1Q86U86 1689 aa18.76■□□□□ 0.59
TPM1-217ENST00000559108 GAPVD1Q14C86 1478 aa18.68■□□□□ 0.58
TPM1-217ENST00000559108 CHIC1Q5VXU3 224 aa18.65■□□□□ 0.58
TPM1-217ENST00000559108 RUSC2Q8N2Y8 1516 aa18.64■□□□□ 0.58
TPM1-217ENST00000559108 CHD1O14646 1710 aa18.64■□□□□ 0.57
TPM1-217ENST00000559108 SNAPC4Q5SXM2 1469 aa18.64■□□□□ 0.57
TPM1-217ENST00000559108 GRIN2BQ13224 1484 aa18.63■□□□□ 0.57
TPM1-217ENST00000559108 TRIM41Q8WV44 630 aa18.62■□□□□ 0.57
TPM1-217ENST00000559108 ADAMTS12P58397 1594 aa18.59■□□□□ 0.57
TPM1-217ENST00000559108 ERICH3Q5RHP9 1530 aa18.56■□□□□ 0.56
TPM1-217ENST00000559108 MAGI1Q96QZ7 1491 aaPredicted RBP18.56■□□□□ 0.56
TPM1-217ENST00000559108 KIF27Q86VH2 1401 aa18.55■□□□□ 0.56
TPM1-217ENST00000559108 SYNJ2O15056 1496 aa18.51■□□□□ 0.55
TPM1-217ENST00000559108 IGF1RP08069 1367 aa18.5■□□□□ 0.55
TPM1-217ENST00000559108 CUL7Q14999 1698 aa18.47■□□□□ 0.55
TPM1-217ENST00000559108 FHAD1B1AJZ9 1412 aa18.45■□□□□ 0.54
TPM1-217ENST00000559108 GRIN2AQ12879 1464 aa18.44■□□□□ 0.54
TPM1-217ENST00000559108 CEP170Q5SW79 1584 aa18.42■□□□□ 0.54
TPM1-217ENST00000559108 FBLN2P98095 1184 aa18.4■□□□□ 0.54
TPM1-217ENST00000559108 CLASP1Q7Z460 1538 aa18.39■□□□□ 0.54
TPM1-217ENST00000559108 CHMP7Q8WUX9 453 aaPredicted RBP18.36■□□□□ 0.53
TPM1-217ENST00000559108 NUP160Q12769 1436 aa18.35■□□□□ 0.53
TPM1-217ENST00000559108 CARMIL1Q5VZK9 1371 aa18.35■□□□□ 0.53
TPM1-217ENST00000559108 PRXQ9BXM0 1461 aa18.34■□□□□ 0.53
TPM1-217ENST00000559108 OSCARQ8IYS5 282 aa18.33■□□□□ 0.52
TPM1-217ENST00000559108 FAM9AQ8IZU1 332 aaPredicted RBP18.32■□□□□ 0.52
TPM1-217ENST00000559108 DNAJC5Q9H3Z4 198 aa18.3■□□□□ 0.52
TPM1-217ENST00000559108 EEA1Q15075 1411 aa18.3■□□□□ 0.52
TPM1-217ENST00000559108 RAPGEF2Q9Y4G8 1499 aa18.28■□□□□ 0.52
TPM1-217ENST00000559108 CSRNP3Q8WYN3 585 aa18.27■□□□□ 0.52
TPM1-217ENST00000559108 SHROOM2Q13796 1616 aa18.26■□□□□ 0.51
TPM1-217ENST00000559108 KIF21BO75037 1637 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms