RNA–Protein interactions for RNA: ENST00000403994.7

TPM1-207, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene TPM1, Length 1,049 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-207ENST00000403994 NISCHQ9Y2I1 1504 aa38.37■■■■□ 3.73
TPM1-207ENST00000403994 CCDC180Q9P1Z9 1646 aa34.42■■■■□ 3.1
TPM1-207ENST00000403994 ABCC9O60706 1549 aa33.99■■■■□ 3.03
TPM1-207ENST00000403994 RB1CC1Q8TDY2 1594 aa32.54■■■□□ 2.8
TPM1-207ENST00000403994 NACADO15069 1562 aa32.38■■■□□ 2.77
TPM1-207ENST00000403994 MYO15BQ96JP2 1530 aa32.05■■■□□ 2.72
TPM1-207ENST00000403994 DCAF8L2P0C7V8 631 aa32.02■■■□□ 2.72
TPM1-207ENST00000403994 ZCCHC6Q5VYS8 1495 aaKnown RBP31.92■■■□□ 2.7
TPM1-207ENST00000403994 UNC13AQ9UPW8 1703 aa31.91■■■□□ 2.7
TPM1-207ENST00000403994 DCAF1Q9Y4B6 1507 aa31.75■■■□□ 2.67
TPM1-207ENST00000403994 BICRAQ9NZM4 1560 aa31.61■■■□□ 2.65
TPM1-207ENST00000403994 PABPN1Q86U42 306 aaKnown RBP eCLIP31.58■■■□□ 2.65
TPM1-207ENST00000403994 DNAJC5BQ9UF47 199 aa31.51■■■□□ 2.63
TPM1-207ENST00000403994 SCRIBQ14160 1630 aa31.34■■■□□ 2.61
TPM1-207ENST00000403994 SHROOM4Q9ULL8 1493 aa31.24■■■□□ 2.59
TPM1-207ENST00000403994 EIF4G1Q04637 1599 aaKnown RBP30.79■■■□□ 2.52
TPM1-207ENST00000403994 CC2D2AQ9P2K1 1620 aa30.78■■■□□ 2.52
TPM1-207ENST00000403994 CECR2Q9BXF3 1484 aa30.59■■■□□ 2.49
TPM1-207ENST00000403994 SMARCA4P51532 1647 aa29.93■■■□□ 2.38
TPM1-207ENST00000403994 NCAPD3P42695 1498 aa29.83■■■□□ 2.37
TPM1-207ENST00000403994 ATAD2BQ9ULI0 1458 aa29.8■■■□□ 2.36
TPM1-207ENST00000403994 BAZ1AQ9NRL2 1556 aaPredicted RBP29.79■■■□□ 2.36
TPM1-207ENST00000403994 SMARCA2P51531 1590 aa29.78■■■□□ 2.36
TPM1-207ENST00000403994 HMGXB3Q12766 1538 aa29.75■■■□□ 2.35
TPM1-207ENST00000403994 PEG3Q9GZU2 1588 aa29.64■■■□□ 2.34
TPM1-207ENST00000403994 MROH2BQ7Z745 1585 aa29.57■■■□□ 2.32
TPM1-207ENST00000403994 BAZ1BQ9UIG0 1483 aaKnown RBP29.55■■■□□ 2.32
TPM1-207ENST00000403994 ERCC6Q03468 1493 aa29.33■■■□□ 2.29
TPM1-207ENST00000403994 NESP48681 1621 aa29.31■■■□□ 2.28
TPM1-207ENST00000403994 WIZO95785 1651 aa29.26■■■□□ 2.27
TPM1-207ENST00000403994 CUX2O14529 1486 aa29.21■■■□□ 2.27
TPM1-207ENST00000403994 LAMC3Q9Y6N6 1575 aa29.19■■■□□ 2.26
TPM1-207ENST00000403994 THOC2Q8NI27 1593 aaKnown RBP29.06■■■□□ 2.24
TPM1-207ENST00000403994 KIF21AQ7Z4S6 1674 aa29.04■■■□□ 2.24
TPM1-207ENST00000403994 RSF1Q96T23 1441 aaPredicted RBP29.03■■■□□ 2.24
TPM1-207ENST00000403994 TOP2AP11388 1531 aaKnown RBP28.93■■■□□ 2.22
TPM1-207ENST00000403994 PDS5BQ9NTI5 1447 aa28.92■■■□□ 2.22
TPM1-207ENST00000403994 CADPSQ9ULU8 1353 aa28.91■■■□□ 2.22
TPM1-207ENST00000403994 MRC2Q9UBG0 1479 aa28.72■■■□□ 2.19
TPM1-207ENST00000403994 DNAJC5Q9H3Z4 198 aa28.71■■■□□ 2.19
TPM1-207ENST00000403994 CFTRP13569 1480 aa28.7■■■□□ 2.18
TPM1-207ENST00000403994 WDR62O43379 1518 aa28.69■■■□□ 2.18
TPM1-207ENST00000403994 CEP164Q9UPV0 1460 aa28.66■■■□□ 2.18
TPM1-207ENST00000403994 FANCD2Q9BXW9 1451 aa28.64■■■□□ 2.17
TPM1-207ENST00000403994 PRDM2Q13029 1718 aa28.61■■■□□ 2.17
TPM1-207ENST00000403994 CCDC88BA6NC98 1476 aa28.51■■■□□ 2.15
TPM1-207ENST00000403994 URB2Q14146 1524 aaKnown RBP28.42■■■□□ 2.14
TPM1-207ENST00000403994 TOPBP1Q92547 1522 aa28.15■■■□□ 2.1
TPM1-207ENST00000403994 DNMBPQ6XZF7 1577 aa28.11■■■□□ 2.09
TPM1-207ENST00000403994 IFT140Q96RY7 1462 aa28.06■■■□□ 2.08
TPM1-207ENST00000403994 ABCC8Q09428 1581 aa28.06■■■□□ 2.08
TPM1-207ENST00000403994 ZNF608Q9ULD9 1512 aaPredicted RBP27.99■■■□□ 2.07
TPM1-207ENST00000403994 EIF4G3O43432 1585 aaKnown RBP27.95■■■□□ 2.07
TPM1-207ENST00000403994 TARBP1Q13395 1621 aaKnown RBP27.92■■■□□ 2.06
TPM1-207ENST00000403994 POLA1P09884 1462 aaPredicted RBP27.88■■■□□ 2.05
TPM1-207ENST00000403994 SUPT5HO00267 1087 aaKnown RBP27.82■■■□□ 2.04
TPM1-207ENST00000403994 CUX1P39880 1505 aa27.79■■■□□ 2.04
TPM1-207ENST00000403994 OSCARQ8IYS5 282 aa27.76■■■□□ 2.03
TPM1-207ENST00000403994 FGD5Q6ZNL6 1462 aa27.75■■■□□ 2.03
TPM1-207ENST00000403994 RAD54L2Q9Y4B4 1467 aa27.73■■■□□ 2.03
TPM1-207ENST00000403994 AQRO60306 1485 aaKnown RBP eCLIP27.72■■■□□ 2.032e-12■■■■□ 23
TPM1-207ENST00000403994 CHD1O14646 1710 aa27.69■■■□□ 2.02
TPM1-207ENST00000403994 WDR97A6NE52 1622 aa27.68■■■□□ 2.02
TPM1-207ENST00000403994 SOGA1O94964 1423 aa27.67■■■□□ 2.02
TPM1-207ENST00000403994 RIMBP3CA6NJZ7 1639 aa27.57■■■□□ 2
TPM1-207ENST00000403994 RIMBP3BA6NNM3 1639 aa27.57■■■□□ 2
TPM1-207ENST00000403994 RIMBP3Q9UFD9 1639 aa27.57■■■□□ 2
TPM1-207ENST00000403994 TRIM41Q8WV44 630 aa27.57■■■□□ 2
TPM1-207ENST00000403994 TDRD9Q8NDG6 1382 aaKnown RBP27.57■■■□□ 2
TPM1-207ENST00000403994 SNAPC4Q5SXM2 1469 aa27.52■■■□□ 2
TPM1-207ENST00000403994 PBRM1Q86U86 1689 aa27.5■■□□□ 1.99
TPM1-207ENST00000403994 ARHGEF11O15085 1522 aa27.49■■□□□ 1.99
TPM1-207ENST00000403994 BIVM-ERCC5R4GMW8 1640 aa27.48■■□□□ 1.99
TPM1-207ENST00000403994 MAGI1Q96QZ7 1491 aaPredicted RBP27.46■■□□□ 1.99
TPM1-207ENST00000403994 ABCA5Q8WWZ7 1642 aa27.46■■□□□ 1.99
TPM1-207ENST00000403994 GRIN2BQ13224 1484 aa27.45■■□□□ 1.99
TPM1-207ENST00000403994 ABCA10Q8WWZ4 1543 aa27.45■■□□□ 1.98
TPM1-207ENST00000403994 TOP2BQ02880 1626 aa27.45■■□□□ 1.98
TPM1-207ENST00000403994 SYNJ1O43426 1573 aa27.43■■□□□ 1.98
TPM1-207ENST00000403994 GAPVD1Q14C86 1478 aa27.39■■□□□ 1.98
TPM1-207ENST00000403994 FBLN2P98095 1184 aa27.38■■□□□ 1.97
TPM1-207ENST00000403994 WRNQ14191 1432 aaPredicted RBP eCLIP27.38■■□□□ 1.97
TPM1-207ENST00000403994 SYNJ2O15056 1496 aa27.35■■□□□ 1.97
TPM1-207ENST00000403994 CLASP1Q7Z460 1538 aa27.35■■□□□ 1.97
TPM1-207ENST00000403994 CHMP7Q8WUX9 453 aaPredicted RBP27.24■■□□□ 1.95
TPM1-207ENST00000403994 ARAP1Q96P48 1450 aa27.24■■□□□ 1.95
TPM1-207ENST00000403994 ADAMTS12P58397 1594 aa27.23■■□□□ 1.95
TPM1-207ENST00000403994 GRIN2AQ12879 1464 aa27.13■■□□□ 1.93
TPM1-207ENST00000403994 ERICH3Q5RHP9 1530 aa27.13■■□□□ 1.93
TPM1-207ENST00000403994 CYB5RLQ6IPT4 315 aa27.08■■□□□ 1.93
TPM1-207ENST00000403994 CEP170Q5SW79 1584 aa27.06■■□□□ 1.92
TPM1-207ENST00000403994 FHAD1B1AJZ9 1412 aa27.05■■□□□ 1.92
TPM1-207ENST00000403994 NUP160Q12769 1436 aa27.03■■□□□ 1.92
TPM1-207ENST00000403994 SHROOM2Q13796 1616 aa26.94■■□□□ 1.9
TPM1-207ENST00000403994 ERCC6L2Q5T890 1561 aa26.92■■□□□ 1.9
TPM1-207ENST00000403994 RUSC2Q8N2Y8 1516 aa26.85■■□□□ 1.89
TPM1-207ENST00000403994 CUL7Q14999 1698 aa26.85■■□□□ 1.89
TPM1-207ENST00000403994 KIF27Q86VH2 1401 aa26.82■■□□□ 1.88
TPM1-207ENST00000403994 IGF1RP08069 1367 aa26.72■■□□□ 1.87
TPM1-207ENST00000403994 PRG4Q92954 1404 aaPredicted RBP26.68■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms