RNA–Protein interactions for RNA: ENST00000560970.5

TPM1-227, Transcript of tropomyosin 1, humanhuman

TSL 1 (best)

Gene TPM1, Length 1,039 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-227ENST00000560970 NISCHQ9Y2I1 1504 aa27.18■■□□□ 1.94
TPM1-227ENST00000560970 CCDC180Q9P1Z9 1646 aa24.67■■□□□ 1.54
TPM1-227ENST00000560970 ABCC9O60706 1549 aa24.42■■□□□ 1.5
TPM1-227ENST00000560970 RB1CC1Q8TDY2 1594 aa23.36■■□□□ 1.33
TPM1-227ENST00000560970 NACADO15069 1562 aa23.17■■□□□ 1.3
TPM1-227ENST00000560970 UNC13AQ9UPW8 1703 aa23.02■■□□□ 1.28
TPM1-227ENST00000560970 MYO15BQ96JP2 1530 aa22.83■■□□□ 1.25
TPM1-227ENST00000560970 DNAJC5BQ9UF47 199 aa22.75■■□□□ 1.23
TPM1-227ENST00000560970 BICRAQ9NZM4 1560 aa22.67■■□□□ 1.22
TPM1-227ENST00000560970 DCAF8L2P0C7V8 631 aa22.64■■□□□ 1.21
TPM1-227ENST00000560970 ZCCHC6Q5VYS8 1495 aaKnown RBP22.59■■□□□ 1.21
TPM1-227ENST00000560970 PABPN1Q86U42 306 aaKnown RBP eCLIP22.54■■□□□ 1.2
TPM1-227ENST00000560970 DCAF1Q9Y4B6 1507 aa22.52■■□□□ 1.2
TPM1-227ENST00000560970 SHROOM4Q9ULL8 1493 aa22.43■■□□□ 1.18
TPM1-227ENST00000560970 SCRIBQ14160 1630 aa22.34■■□□□ 1.17
TPM1-227ENST00000560970 CC2D2AQ9P2K1 1620 aa22.18■■□□□ 1.14
TPM1-227ENST00000560970 EIF4G1Q04637 1599 aaKnown RBP22.12■■□□□ 1.13
TPM1-227ENST00000560970 CECR2Q9BXF3 1484 aa22.02■■□□□ 1.12
TPM1-227ENST00000560970 SMARCA4P51532 1647 aa21.33■■□□□ 1
TPM1-227ENST00000560970 HMGXB3Q12766 1538 aa21.28■■□□□ 1
TPM1-227ENST00000560970 NCAPD3P42695 1498 aa21.27■■□□□ 1
TPM1-227ENST00000560970 SMARCA2P51531 1590 aa21.26■□□□□ 0.99
TPM1-227ENST00000560970 ATAD2BQ9ULI0 1458 aa21.21■□□□□ 0.99
TPM1-227ENST00000560970 CUX2O14529 1486 aa21.17■□□□□ 0.98
TPM1-227ENST00000560970 BAZ1AQ9NRL2 1556 aaPredicted RBP21.17■□□□□ 0.98
TPM1-227ENST00000560970 ERCC6Q03468 1493 aa21.13■□□□□ 0.97
TPM1-227ENST00000560970 PEG3Q9GZU2 1588 aa21.12■□□□□ 0.97
TPM1-227ENST00000560970 BAZ1BQ9UIG0 1483 aaKnown RBP21.06■□□□□ 0.96
TPM1-227ENST00000560970 THOC2Q8NI27 1593 aaKnown RBP20.97■□□□□ 0.95
TPM1-227ENST00000560970 DNAJC5Q9H3Z4 198 aa20.97■□□□□ 0.95
TPM1-227ENST00000560970 NESP48681 1621 aa20.96■□□□□ 0.95
TPM1-227ENST00000560970 LAMC3Q9Y6N6 1575 aa20.95■□□□□ 0.94
TPM1-227ENST00000560970 MROH2BQ7Z745 1585 aa20.93■□□□□ 0.94
TPM1-227ENST00000560970 KIF21AQ7Z4S6 1674 aa20.92■□□□□ 0.94
TPM1-227ENST00000560970 WIZO95785 1651 aa20.76■□□□□ 0.91
TPM1-227ENST00000560970 PDS5BQ9NTI5 1447 aa20.68■□□□□ 0.9
TPM1-227ENST00000560970 WDR62O43379 1518 aa20.61■□□□□ 0.89
TPM1-227ENST00000560970 MRC2Q9UBG0 1479 aa20.59■□□□□ 0.89
TPM1-227ENST00000560970 CADPSQ9ULU8 1353 aa20.57■□□□□ 0.88
TPM1-227ENST00000560970 PRDM2Q13029 1718 aa20.56■□□□□ 0.88
TPM1-227ENST00000560970 TOP2AP11388 1531 aaKnown RBP20.51■□□□□ 0.87
TPM1-227ENST00000560970 CEP164Q9UPV0 1460 aa20.5■□□□□ 0.87
TPM1-227ENST00000560970 FANCD2Q9BXW9 1451 aa20.43■□□□□ 0.86
TPM1-227ENST00000560970 CFTRP13569 1480 aa20.4■□□□□ 0.86
TPM1-227ENST00000560970 RSF1Q96T23 1441 aaPredicted RBP20.39■□□□□ 0.85
TPM1-227ENST00000560970 URB2Q14146 1524 aaKnown RBP20.27■□□□□ 0.84
TPM1-227ENST00000560970 CCDC88BA6NC98 1476 aa20.12■□□□□ 0.81
TPM1-227ENST00000560970 EIF4G3O43432 1585 aaKnown RBP20.08■□□□□ 0.8
TPM1-227ENST00000560970 TOPBP1Q92547 1522 aa20.06■□□□□ 0.8
TPM1-227ENST00000560970 IFT140Q96RY7 1462 aa20.05■□□□□ 0.8
TPM1-227ENST00000560970 DNMBPQ6XZF7 1577 aa20.05■□□□□ 0.8
TPM1-227ENST00000560970 TRIM41Q8WV44 630 aa20.02■□□□□ 0.8
TPM1-227ENST00000560970 ABCC8Q09428 1581 aa20■□□□□ 0.79
TPM1-227ENST00000560970 ZNF608Q9ULD9 1512 aaPredicted RBP19.99■□□□□ 0.79
TPM1-227ENST00000560970 RIMBP3CA6NJZ7 1639 aa19.98■□□□□ 0.79
TPM1-227ENST00000560970 RIMBP3BA6NNM3 1639 aa19.98■□□□□ 0.79
TPM1-227ENST00000560970 RIMBP3Q9UFD9 1639 aa19.98■□□□□ 0.79
TPM1-227ENST00000560970 CHD1O14646 1710 aa19.98■□□□□ 0.79
TPM1-227ENST00000560970 TARBP1Q13395 1621 aaKnown RBP19.96■□□□□ 0.79
TPM1-227ENST00000560970 OSCARQ8IYS5 282 aa19.94■□□□□ 0.78
TPM1-227ENST00000560970 ARHGEF11O15085 1522 aa19.86■□□□□ 0.77
TPM1-227ENST00000560970 WDR97A6NE52 1622 aa19.84■□□□□ 0.77
TPM1-227ENST00000560970 POLA1P09884 1462 aaPredicted RBP19.84■□□□□ 0.77
TPM1-227ENST00000560970 AQRO60306 1485 aaKnown RBP eCLIP19.73■□□□□ 0.752e-12■■■■□ 23
TPM1-227ENST00000560970 PBRM1Q86U86 1689 aa19.73■□□□□ 0.75
TPM1-227ENST00000560970 FGD5Q6ZNL6 1462 aa19.72■□□□□ 0.75
TPM1-227ENST00000560970 CUX1P39880 1505 aa19.7■□□□□ 0.74
TPM1-227ENST00000560970 RAD54L2Q9Y4B4 1467 aa19.69■□□□□ 0.74
TPM1-227ENST00000560970 SNAPC4Q5SXM2 1469 aa19.66■□□□□ 0.74
TPM1-227ENST00000560970 CLASP1Q7Z460 1538 aa19.66■□□□□ 0.74
TPM1-227ENST00000560970 SOGA1O94964 1423 aa19.64■□□□□ 0.73
TPM1-227ENST00000560970 ARAP1Q96P48 1450 aa19.64■□□□□ 0.73
TPM1-227ENST00000560970 SYNJ1O43426 1573 aa19.64■□□□□ 0.73
TPM1-227ENST00000560970 MAGI1Q96QZ7 1491 aaPredicted RBP19.63■□□□□ 0.73
TPM1-227ENST00000560970 ABCA5Q8WWZ7 1642 aa19.6■□□□□ 0.73
TPM1-227ENST00000560970 TDRD9Q8NDG6 1382 aaKnown RBP19.57■□□□□ 0.72
TPM1-227ENST00000560970 GRIN2BQ13224 1484 aa19.56■□□□□ 0.72
TPM1-227ENST00000560970 SYNJ2O15056 1496 aa19.53■□□□□ 0.72
TPM1-227ENST00000560970 FBLN2P98095 1184 aa19.51■□□□□ 0.71
TPM1-227ENST00000560970 BIVM-ERCC5R4GMW8 1640 aa19.51■□□□□ 0.71
TPM1-227ENST00000560970 ABCA10Q8WWZ4 1543 aa19.49■□□□□ 0.71
TPM1-227ENST00000560970 GAPVD1Q14C86 1478 aa19.48■□□□□ 0.71
TPM1-227ENST00000560970 ADAMTS12P58397 1594 aa19.45■□□□□ 0.7
TPM1-227ENST00000560970 CYB5RLQ6IPT4 315 aa19.45■□□□□ 0.7
TPM1-227ENST00000560970 TOP2BQ02880 1626 aa19.43■□□□□ 0.7
TPM1-227ENST00000560970 CHMP7Q8WUX9 453 aaPredicted RBP19.38■□□□□ 0.69
TPM1-227ENST00000560970 GRIN2AQ12879 1464 aa19.35■□□□□ 0.69
TPM1-227ENST00000560970 CEP170Q5SW79 1584 aa19.34■□□□□ 0.69
TPM1-227ENST00000560970 SHROOM2Q13796 1616 aa19.33■□□□□ 0.68
TPM1-227ENST00000560970 WRNQ14191 1432 aaPredicted RBP eCLIP19.32■□□□□ 0.68
TPM1-227ENST00000560970 ERICH3Q5RHP9 1530 aa19.29■□□□□ 0.68
TPM1-227ENST00000560970 TRHP20396 242 aaPredicted RBP19.27■□□□□ 0.68
TPM1-227ENST00000560970 ERCC6L2Q5T890 1561 aa19.27■□□□□ 0.67
TPM1-227ENST00000560970 NUP160Q12769 1436 aa19.26■□□□□ 0.67
TPM1-227ENST00000560970 SUPT5HO00267 1087 aaKnown RBP19.26■□□□□ 0.67
TPM1-227ENST00000560970 FHAD1B1AJZ9 1412 aa19.21■□□□□ 0.67
TPM1-227ENST00000560970 RUSC2Q8N2Y8 1516 aa19.2■□□□□ 0.66
TPM1-227ENST00000560970 KIF13AQ9H1H9 1805 aa19.15■□□□□ 0.66
TPM1-227ENST00000560970 CUL7Q14999 1698 aa19.11■□□□□ 0.65
TPM1-227ENST00000560970 PRG4Q92954 1404 aaPredicted RBP19■□□□□ 0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms