RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 NISCHQ9Y2I1 1504 aa24.87■■□□□ 1.57
TPM1-229ENST00000561242 CCDC180Q9P1Z9 1646 aa21.91■■□□□ 1.1
TPM1-229ENST00000561242 ABCC9O60706 1549 aa21.53■■□□□ 1.04
TPM1-229ENST00000561242 DCAF8L2P0C7V8 631 aa21.28■■□□□ 1
TPM1-229ENST00000561242 RB1CC1Q8TDY2 1594 aa20.75■□□□□ 0.91
TPM1-229ENST00000561242 NACADO15069 1562 aa20.73■□□□□ 0.91
TPM1-229ENST00000561242 ZCCHC6Q5VYS8 1495 aaKnown RBP20.69■□□□□ 0.9
TPM1-229ENST00000561242 MYO15BQ96JP2 1530 aa20.58■□□□□ 0.89
TPM1-229ENST00000561242 DCAF1Q9Y4B6 1507 aa20.54■□□□□ 0.88
TPM1-229ENST00000561242 PABPN1Q86U42 306 aaKnown RBP eCLIP20.29■□□□□ 0.84
TPM1-229ENST00000561242 SCRIBQ14160 1630 aa20.13■□□□□ 0.81
TPM1-229ENST00000561242 SHROOM4Q9ULL8 1493 aa20■□□□□ 0.79
TPM1-229ENST00000561242 UNC13AQ9UPW8 1703 aa19.84■□□□□ 0.77
TPM1-229ENST00000561242 BICRAQ9NZM4 1560 aa19.83■□□□□ 0.77
TPM1-229ENST00000561242 DNAJC5BQ9UF47 199 aa19.52■□□□□ 0.72
TPM1-229ENST00000561242 EIF4G1Q04637 1599 aaKnown RBP19.46■□□□□ 0.71
TPM1-229ENST00000561242 CECR2Q9BXF3 1484 aa19.35■□□□□ 0.69
TPM1-229ENST00000561242 CC2D2AQ9P2K1 1620 aa19.34■□□□□ 0.69
TPM1-229ENST00000561242 BAZ1AQ9NRL2 1556 aaPredicted RBP19.34■□□□□ 0.69
TPM1-229ENST00000561242 SMARCA2P51531 1590 aa19.19■□□□□ 0.66
TPM1-229ENST00000561242 SMARCA4P51532 1647 aa19.19■□□□□ 0.66
TPM1-229ENST00000561242 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
TPM1-229ENST00000561242 NCAPD3P42695 1498 aa19.14■□□□□ 0.65
TPM1-229ENST00000561242 MROH2BQ7Z745 1585 aa19.13■□□□□ 0.65
TPM1-229ENST00000561242 BAZ1BQ9UIG0 1483 aaKnown RBP19.11■□□□□ 0.65
TPM1-229ENST00000561242 SUPT5HO00267 1087 aaKnown RBP19.06■□□□□ 0.64
TPM1-229ENST00000561242 RSF1Q96T23 1441 aaPredicted RBP19.06■□□□□ 0.64
TPM1-229ENST00000561242 HMGXB3Q12766 1538 aa18.98■□□□□ 0.63
TPM1-229ENST00000561242 PEG3Q9GZU2 1588 aa18.94■□□□□ 0.62
TPM1-229ENST00000561242 WIZO95785 1651 aa18.89■□□□□ 0.61
TPM1-229ENST00000561242 TOP2AP11388 1531 aaKnown RBP18.78■□□□□ 0.6
TPM1-229ENST00000561242 ERCC6Q03468 1493 aa18.72■□□□□ 0.59
TPM1-229ENST00000561242 CADPSQ9ULU8 1353 aa18.7■□□□□ 0.58
TPM1-229ENST00000561242 PDS5BQ9NTI5 1447 aa18.67■□□□□ 0.58
TPM1-229ENST00000561242 CCDC88BA6NC98 1476 aa18.61■□□□□ 0.57
TPM1-229ENST00000561242 LAMC3Q9Y6N6 1575 aa18.59■□□□□ 0.57
TPM1-229ENST00000561242 NESP48681 1621 aa18.56■□□□□ 0.56
TPM1-229ENST00000561242 CFTRP13569 1480 aa18.5■□□□□ 0.55
TPM1-229ENST00000561242 FANCD2Q9BXW9 1451 aa18.44■□□□□ 0.54
TPM1-229ENST00000561242 CEP164Q9UPV0 1460 aa18.43■□□□□ 0.54
TPM1-229ENST00000561242 MRC2Q9UBG0 1479 aa18.33■□□□□ 0.52
TPM1-229ENST00000561242 CUX2O14529 1486 aa18.3■□□□□ 0.52
TPM1-229ENST00000561242 ABCC8Q09428 1581 aa18.26■□□□□ 0.51
TPM1-229ENST00000561242 KIF21AQ7Z4S6 1674 aa18.19■□□□□ 0.5
TPM1-229ENST00000561242 WDR62O43379 1518 aa18.12■□□□□ 0.49
TPM1-229ENST00000561242 URB2Q14146 1524 aaKnown RBP18.1■□□□□ 0.49
TPM1-229ENST00000561242 PRDM2Q13029 1718 aa18.09■□□□□ 0.49
TPM1-229ENST00000561242 THOC2Q8NI27 1593 aaKnown RBP18.09■□□□□ 0.49
TPM1-229ENST00000561242 TOPBP1Q92547 1522 aa18.08■□□□□ 0.49
TPM1-229ENST00000561242 WRNQ14191 1432 aaPredicted RBP eCLIP18.08■□□□□ 0.49
TPM1-229ENST00000561242 DNMBPQ6XZF7 1577 aa18.06■□□□□ 0.48
TPM1-229ENST00000561242 SOGA1O94964 1423 aa18.05■□□□□ 0.48
TPM1-229ENST00000561242 IFT140Q96RY7 1462 aa18.04■□□□□ 0.48
TPM1-229ENST00000561242 TRIM41Q8WV44 630 aa18.04■□□□□ 0.48
TPM1-229ENST00000561242 FGD5Q6ZNL6 1462 aa17.95■□□□□ 0.46
TPM1-229ENST00000561242 FBLN2P98095 1184 aa17.94■□□□□ 0.46
TPM1-229ENST00000561242 CUX1P39880 1505 aa17.93■□□□□ 0.46
TPM1-229ENST00000561242 POLA1P09884 1462 aaPredicted RBP17.93■□□□□ 0.46
TPM1-229ENST00000561242 TDRD9Q8NDG6 1382 aaKnown RBP17.9■□□□□ 0.46
TPM1-229ENST00000561242 RAD54L2Q9Y4B4 1467 aa17.89■□□□□ 0.45
TPM1-229ENST00000561242 CHMP7Q8WUX9 453 aaPredicted RBP17.86■□□□□ 0.45
TPM1-229ENST00000561242 AQRO60306 1485 aaKnown RBP eCLIP17.84■□□□□ 0.451e-12■■□□□ 13.6
TPM1-229ENST00000561242 OSCARQ8IYS5 282 aa17.83■□□□□ 0.44
TPM1-229ENST00000561242 TOP2BQ02880 1626 aa17.83■□□□□ 0.44
TPM1-229ENST00000561242 ZNF608Q9ULD9 1512 aaPredicted RBP17.8■□□□□ 0.44
TPM1-229ENST00000561242 SYNJ1O43426 1573 aa17.78■□□□□ 0.44
TPM1-229ENST00000561242 GAPVD1Q14C86 1478 aa17.77■□□□□ 0.44
TPM1-229ENST00000561242 KIF27Q86VH2 1401 aa17.77■□□□□ 0.44
TPM1-229ENST00000561242 ABCA10Q8WWZ4 1543 aa17.77■□□□□ 0.43
TPM1-229ENST00000561242 GRIN2BQ13224 1484 aa17.76■□□□□ 0.43
TPM1-229ENST00000561242 BIVM-ERCC5R4GMW8 1640 aa17.74■□□□□ 0.43
TPM1-229ENST00000561242 CHIC1Q5VXU3 224 aa17.71■□□□□ 0.43
TPM1-229ENST00000561242 WDR97A6NE52 1622 aa17.71■□□□□ 0.43
TPM1-229ENST00000561242 TARBP1Q13395 1621 aaKnown RBP17.71■□□□□ 0.43
TPM1-229ENST00000561242 EIF4G3O43432 1585 aaKnown RBP17.67■□□□□ 0.42
TPM1-229ENST00000561242 SNAPC4Q5SXM2 1469 aa17.65■□□□□ 0.42
TPM1-229ENST00000561242 MAGI1Q96QZ7 1491 aaPredicted RBP17.65■□□□□ 0.42
TPM1-229ENST00000561242 DNAJC5Q9H3Z4 198 aa17.65■□□□□ 0.42
TPM1-229ENST00000561242 FAM9AQ8IZU1 332 aaPredicted RBP17.64■□□□□ 0.41
TPM1-229ENST00000561242 FHAD1B1AJZ9 1412 aa17.6■□□□□ 0.41
TPM1-229ENST00000561242 SYNJ2O15056 1496 aa17.59■□□□□ 0.41
TPM1-229ENST00000561242 CSRNP3Q8WYN3 585 aa17.58■□□□□ 0.4
TPM1-229ENST00000561242 IGF1RP08069 1367 aa17.57■□□□□ 0.4
TPM1-229ENST00000561242 CARMIL1Q5VZK9 1371 aa17.57■□□□□ 0.4
TPM1-229ENST00000561242 ERICH3Q5RHP9 1530 aa17.57■□□□□ 0.4
TPM1-229ENST00000561242 EEA1Q15075 1411 aa17.55■□□□□ 0.4
TPM1-229ENST00000561242 ABCA5Q8WWZ7 1642 aa17.52■□□□□ 0.4
TPM1-229ENST00000561242 PBRM1Q86U86 1689 aa17.46■□□□□ 0.39
TPM1-229ENST00000561242 GRIN2AQ12879 1464 aa17.45■□□□□ 0.38
TPM1-229ENST00000561242 UBTFP17480 764 aaKnown RBP17.45■□□□□ 0.38
TPM1-229ENST00000561242 EHMT2Q96KQ7 1210 aa17.43■□□□□ 0.38
TPM1-229ENST00000561242 RAPGEF2Q9Y4G8 1499 aa17.43■□□□□ 0.38
TPM1-229ENST00000561242 JPH4Q96JJ6 628 aa17.42■□□□□ 0.38
TPM1-229ENST00000561242 ADAMTS12P58397 1594 aa17.4■□□□□ 0.38
TPM1-229ENST00000561242 CUL7Q14999 1698 aa17.4■□□□□ 0.38
TPM1-229ENST00000561242 RUSC2Q8N2Y8 1516 aa17.4■□□□□ 0.38
TPM1-229ENST00000561242 CYB5RLQ6IPT4 315 aa17.35■□□□□ 0.37
TPM1-229ENST00000561242 CHD1O14646 1710 aa17.35■□□□□ 0.37
TPM1-229ENST00000561242 RANGAP1P46060 587 aaPredicted RBP17.34■□□□□ 0.37
TPM1-229ENST00000561242 TTBK1Q5TCY1 1321 aaPredicted RBP17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms