RNA–Protein interactions for RNA: ENST00000560959.5

TPM1-226, Transcript of tropomyosin 1, humanhuman

TSL 2 BASIC

Gene TPM1, Length 925 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-226ENST00000560959 NISCHQ9Y2I1 1504 aa47.14■■■■■ 5.14
TPM1-226ENST00000560959 ABCC9O60706 1549 aa42.87■■■■■ 4.45
TPM1-226ENST00000560959 CCDC180Q9P1Z9 1646 aa42.44■■■■■ 4.38
TPM1-226ENST00000560959 DNAJC5BQ9UF47 199 aa40.72■■■■■ 4.11
TPM1-226ENST00000560959 RB1CC1Q8TDY2 1594 aa40.66■■■■■ 4.1
TPM1-226ENST00000560959 NACADO15069 1562 aa40.32■■■■■ 4.05
TPM1-226ENST00000560959 DCAF8L2P0C7V8 631 aa39.95■■■■□ 3.99
TPM1-226ENST00000560959 PABPN1Q86U42 306 aaKnown RBP eCLIP39.89■■■■□ 3.98
TPM1-226ENST00000560959 MYO15BQ96JP2 1530 aa39.7■■■■□ 3.95
TPM1-226ENST00000560959 UNC13AQ9UPW8 1703 aa39.57■■■■□ 3.92
TPM1-226ENST00000560959 BICRAQ9NZM4 1560 aa39.46■■■■□ 3.91
TPM1-226ENST00000560959 SHROOM4Q9ULL8 1493 aa39.04■■■■□ 3.84
TPM1-226ENST00000560959 DCAF1Q9Y4B6 1507 aa38.99■■■■□ 3.83
TPM1-226ENST00000560959 ZCCHC6Q5VYS8 1495 aaKnown RBP38.94■■■■□ 3.82
TPM1-226ENST00000560959 CECR2Q9BXF3 1484 aa38.73■■■■□ 3.79
TPM1-226ENST00000560959 CC2D2AQ9P2K1 1620 aa38.71■■■■□ 3.79
TPM1-226ENST00000560959 SCRIBQ14160 1630 aa38.55■■■■□ 3.76
TPM1-226ENST00000560959 EIF4G1Q04637 1599 aaKnown RBP38.54■■■■□ 3.76
TPM1-226ENST00000560959 DNAJC5Q9H3Z4 198 aa37.83■■■■□ 3.65
TPM1-226ENST00000560959 NCAPD3P42695 1498 aa37.28■■■■□ 3.56
TPM1-226ENST00000560959 CUX2O14529 1486 aa37.26■■■■□ 3.56
TPM1-226ENST00000560959 ERCC6Q03468 1493 aa37.08■■■■□ 3.53
TPM1-226ENST00000560959 ATAD2BQ9ULI0 1458 aa37.04■■■■□ 3.52
TPM1-226ENST00000560959 SMARCA2P51531 1590 aa36.9■■■■□ 3.5
TPM1-226ENST00000560959 HMGXB3Q12766 1538 aa36.89■■■■□ 3.5
TPM1-226ENST00000560959 SMARCA4P51532 1647 aa36.8■■■■□ 3.48
TPM1-226ENST00000560959 NESP48681 1621 aa36.69■■■■□ 3.46
TPM1-226ENST00000560959 BAZ1BQ9UIG0 1483 aaKnown RBP36.62■■■■□ 3.45
TPM1-226ENST00000560959 BAZ1AQ9NRL2 1556 aaPredicted RBP36.61■■■■□ 3.45
TPM1-226ENST00000560959 PEG3Q9GZU2 1588 aa36.53■■■■□ 3.44
TPM1-226ENST00000560959 LAMC3Q9Y6N6 1575 aa36.44■■■■□ 3.42
TPM1-226ENST00000560959 THOC2Q8NI27 1593 aaKnown RBP36.4■■■■□ 3.42
TPM1-226ENST00000560959 PDS5BQ9NTI5 1447 aa36.31■■■■□ 3.4
TPM1-226ENST00000560959 MROH2BQ7Z745 1585 aa36.26■■■■□ 3.39
TPM1-226ENST00000560959 CADPSQ9ULU8 1353 aa36.12■■■■□ 3.37
TPM1-226ENST00000560959 KIF21AQ7Z4S6 1674 aa36.11■■■■□ 3.37
TPM1-226ENST00000560959 MRC2Q9UBG0 1479 aa35.95■■■■□ 3.35
TPM1-226ENST00000560959 WDR62O43379 1518 aa35.87■■■■□ 3.33
TPM1-226ENST00000560959 TRIM41Q8WV44 630 aa35.82■■■■□ 3.32
TPM1-226ENST00000560959 WIZO95785 1651 aa35.73■■■■□ 3.31
TPM1-226ENST00000560959 CEP164Q9UPV0 1460 aa35.7■■■■□ 3.31
TPM1-226ENST00000560959 FANCD2Q9BXW9 1451 aa35.63■■■■□ 3.29
TPM1-226ENST00000560959 CFTRP13569 1480 aa35.59■■■■□ 3.29
TPM1-226ENST00000560959 OSCARQ8IYS5 282 aa35.54■■■■□ 3.28
TPM1-226ENST00000560959 RSF1Q96T23 1441 aaPredicted RBP35.4■■■■□ 3.26
TPM1-226ENST00000560959 URB2Q14146 1524 aaKnown RBP35.33■■■■□ 3.25
TPM1-226ENST00000560959 TOP2AP11388 1531 aaKnown RBP35.32■■■■□ 3.25
TPM1-226ENST00000560959 IFT140Q96RY7 1462 aa35.05■■■■□ 3.2
TPM1-226ENST00000560959 PRDM2Q13029 1718 aa34.99■■■■□ 3.19
TPM1-226ENST00000560959 CCDC88BA6NC98 1476 aa34.97■■■■□ 3.19
TPM1-226ENST00000560959 ZNF608Q9ULD9 1512 aaPredicted RBP34.96■■■■□ 3.19
TPM1-226ENST00000560959 RIMBP3CA6NJZ7 1639 aa34.94■■■■□ 3.18
TPM1-226ENST00000560959 RIMBP3BA6NNM3 1639 aa34.94■■■■□ 3.18
TPM1-226ENST00000560959 RIMBP3Q9UFD9 1639 aa34.94■■■■□ 3.18
TPM1-226ENST00000560959 ABCC8Q09428 1581 aa34.89■■■■□ 3.18
TPM1-226ENST00000560959 TOPBP1Q92547 1522 aa34.89■■■■□ 3.18
TPM1-226ENST00000560959 ARHGEF11O15085 1522 aa34.84■■■■□ 3.17
TPM1-226ENST00000560959 DNMBPQ6XZF7 1577 aa34.7■■■■□ 3.15
TPM1-226ENST00000560959 EIF4G3O43432 1585 aaKnown RBP34.69■■■■□ 3.14
TPM1-226ENST00000560959 CYB5RLQ6IPT4 315 aa34.67■■■■□ 3.14
TPM1-226ENST00000560959 AQRO60306 1485 aaKnown RBP eCLIP34.62■■■■□ 3.131e-12■■■■□ 23
TPM1-226ENST00000560959 TARBP1Q13395 1621 aaKnown RBP34.59■■■■□ 3.13
TPM1-226ENST00000560959 POLA1P09884 1462 aaPredicted RBP34.51■■■■□ 3.11
TPM1-226ENST00000560959 FBLN2P98095 1184 aa34.49■■■■□ 3.11
TPM1-226ENST00000560959 CHD1O14646 1710 aa34.47■■■■□ 3.11
TPM1-226ENST00000560959 ARAP1Q96P48 1450 aa34.46■■■■□ 3.11
TPM1-226ENST00000560959 TRHP20396 242 aaPredicted RBP34.4■■■■□ 3.1
TPM1-226ENST00000560959 SOGA1O94964 1423 aa34.39■■■■□ 3.1
TPM1-226ENST00000560959 RAD54L2Q9Y4B4 1467 aa34.36■■■■□ 3.09
TPM1-226ENST00000560959 TDRD9Q8NDG6 1382 aaKnown RBP34.35■■■■□ 3.09
TPM1-226ENST00000560959 WDR97A6NE52 1622 aa34.3■■■■□ 3.08
TPM1-226ENST00000560959 CHMP7Q8WUX9 453 aaPredicted RBP34.23■■■■□ 3.07
TPM1-226ENST00000560959 SNAPC4Q5SXM2 1469 aa34.22■■■■□ 3.07
TPM1-226ENST00000560959 FGD5Q6ZNL6 1462 aa34.2■■■■□ 3.06
TPM1-226ENST00000560959 MAGI1Q96QZ7 1491 aaPredicted RBP34.19■■■■□ 3.06
TPM1-226ENST00000560959 CLASP1Q7Z460 1538 aa34.19■■■■□ 3.06
TPM1-226ENST00000560959 GRIN2BQ13224 1484 aa34.14■■■■□ 3.06
TPM1-226ENST00000560959 SYNJ1O43426 1573 aa34.13■■■■□ 3.05
TPM1-226ENST00000560959 CUX1P39880 1505 aa34.09■■■■□ 3.05
TPM1-226ENST00000560959 SYNJ2O15056 1496 aa34.07■■■■□ 3.05
TPM1-226ENST00000560959 GAPVD1Q14C86 1478 aa33.95■■■■□ 3.02
TPM1-226ENST00000560959 ABCA10Q8WWZ4 1543 aa33.85■■■■□ 3.01
TPM1-226ENST00000560959 PBRM1Q86U86 1689 aa33.8■■■■□ 3
TPM1-226ENST00000560959 AEBP2Q6ZN18 517 aaPredicted RBP33.77■■■■□ 3
TPM1-226ENST00000560959 ABCA5Q8WWZ7 1642 aa33.75■■■□□ 2.99
TPM1-226ENST00000560959 GRIN2AQ12879 1464 aa33.66■■■□□ 2.98
TPM1-226ENST00000560959 WRNQ14191 1432 aaPredicted RBP eCLIP33.65■■■□□ 2.98
TPM1-226ENST00000560959 NUP160Q12769 1436 aa33.62■■■□□ 2.97
TPM1-226ENST00000560959 ERCC6L2Q5T890 1561 aa33.55■■■□□ 2.96
TPM1-226ENST00000560959 FHAD1B1AJZ9 1412 aa33.53■■■□□ 2.96
TPM1-226ENST00000560959 ADAMTS12P58397 1594 aa33.52■■■□□ 2.96
TPM1-226ENST00000560959 CEP170Q5SW79 1584 aa33.52■■■□□ 2.96
TPM1-226ENST00000560959 SHROOM2Q13796 1616 aa33.45■■■□□ 2.95
TPM1-226ENST00000560959 TOP2BQ02880 1626 aa33.43■■■□□ 2.94
TPM1-226ENST00000560959 SUPT5HO00267 1087 aaKnown RBP33.42■■■□□ 2.94
TPM1-226ENST00000560959 ERICH3Q5RHP9 1530 aa33.42■■■□□ 2.94
TPM1-226ENST00000560959 BIVM-ERCC5R4GMW8 1640 aa33.4■■■□□ 2.94
TPM1-226ENST00000560959 JPH4Q96JJ6 628 aa33.33■■■□□ 2.93
TPM1-226ENST00000560959 PRG4Q92954 1404 aaPredicted RBP33.3■■■□□ 2.92
TPM1-226ENST00000560959 KIF13AQ9H1H9 1805 aa33.16■■■□□ 2.9
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms