RNA–Protein interactions for RNA: ENST00000375750.7

MSH5-203, Transcript of mutS homolog 5, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MSH5, Length 2,775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-203ENST00000375750 NISCHQ9Y2I1 1504 aa32.16■■■□□ 2.74
MSH5-203ENST00000375750 CCDC180Q9P1Z9 1646 aa27.74■■■□□ 2.03
MSH5-203ENST00000375750 ZCCHC6Q5VYS8 1495 aaKnown RBP27.03■■□□□ 1.92
MSH5-203ENST00000375750 DCAF8L2P0C7V8 631 aa26.86■■□□□ 1.89
MSH5-203ENST00000375750 SHROOM4Q9ULL8 1493 aa26.74■■□□□ 1.87
MSH5-203ENST00000375750 DCAF1Q9Y4B6 1507 aa26.44■■□□□ 1.82
MSH5-203ENST00000375750 ABCC9O60706 1549 aa26.36■■□□□ 1.81
MSH5-203ENST00000375750 SUPT5HO00267 1087 aaKnown RBP26.17■■□□□ 1.78
MSH5-203ENST00000375750 MYO15BQ96JP2 1530 aa25.99■■□□□ 1.75
MSH5-203ENST00000375750 NACADO15069 1562 aa25.86■■□□□ 1.73
MSH5-203ENST00000375750 SCRIBQ14160 1630 aa25.81■■□□□ 1.72
MSH5-203ENST00000375750 RB1CC1Q8TDY2 1594 aa25.61■■□□□ 1.69
MSH5-203ENST00000375750 CHIC1Q5VXU3 224 aa25.44■■□□□ 1.66
MSH5-203ENST00000375750 HRCP23327 699 aa25.25■■□□□ 1.63
MSH5-203ENST00000375750 PCGF6Q9BYE7 350 aa25.18■■□□□ 1.62
MSH5-203ENST00000375750 UNC13AQ9UPW8 1703 aa25.14■■□□□ 1.62
MSH5-203ENST00000375750 RSF1Q96T23 1441 aaPredicted RBP25.13■■□□□ 1.61
MSH5-203ENST00000375750 CECR2Q9BXF3 1484 aa25.12■■□□□ 1.61
MSH5-203ENST00000375750 PABPN1Q86U42 306 aaKnown RBP eCLIP25.04■■□□□ 1.62e-6■■■□□ 15.7
MSH5-203ENST00000375750 PPARGC1BQ86YN6 1023 aaKnown RBP25■■□□□ 1.59
MSH5-203ENST00000375750 MROH2BQ7Z745 1585 aa24.94■■□□□ 1.58
MSH5-203ENST00000375750 LOC105371045A0A1W2PR82 267 aa24.93■■□□□ 1.58
MSH5-203ENST00000375750 BICRAQ9NZM4 1560 aa24.91■■□□□ 1.58
MSH5-203ENST00000375750 BAZ1AQ9NRL2 1556 aaPredicted RBP24.77■■□□□ 1.56
MSH5-203ENST00000375750 WIZO95785 1651 aa24.75■■□□□ 1.55
MSH5-203ENST00000375750 SMARCA4P51532 1647 aa24.65■■□□□ 1.54
MSH5-203ENST00000375750 TOP2AP11388 1531 aaKnown RBP24.38■■□□□ 1.49
MSH5-203ENST00000375750 TRIM26Q12899 539 aaPredicted RBP24.37■■□□□ 1.49
MSH5-203ENST00000375750 CCDC88BA6NC98 1476 aa24.26■■□□□ 1.47
MSH5-203ENST00000375750 FAM9AQ8IZU1 332 aaPredicted RBP24.25■■□□□ 1.47
MSH5-203ENST00000375750 EHMT2Q96KQ7 1210 aa24.25■■□□□ 1.47
MSH5-203ENST00000375750 PEG3Q9GZU2 1588 aa24.25■■□□□ 1.47
MSH5-203ENST00000375750 ATAD2BQ9ULI0 1458 aa24.24■■□□□ 1.47
MSH5-203ENST00000375750 SMARCA2P51531 1590 aa24.21■■□□□ 1.47
MSH5-203ENST00000375750 TRIM41Q8WV44 630 aa24.18■■□□□ 1.46
MSH5-203ENST00000375750 EIF4G1Q04637 1599 aaKnown RBP24.14■■□□□ 1.45
MSH5-203ENST00000375750 BAZ1BQ9UIG0 1483 aaKnown RBP24.12■■□□□ 1.45
MSH5-203ENST00000375750 NCAPD3P42695 1498 aa23.94■■□□□ 1.42
MSH5-203ENST00000375750 ABCC8Q09428 1581 aa23.88■■□□□ 1.41
MSH5-203ENST00000375750 HMGXB3Q12766 1538 aa23.85■■□□□ 1.41
MSH5-203ENST00000375750 ZEB1P37275 1124 aaPredicted RBP23.83■■□□□ 1.4
MSH5-203ENST00000375750 CC2D2AQ9P2K1 1620 aa23.75■■□□□ 1.39
MSH5-203ENST00000375750 SCAF1Q9H7N4 1312 aaKnown RBP23.65■■□□□ 1.38
MSH5-203ENST00000375750 WRNQ14191 1432 aaPredicted RBP eCLIP23.63■■□□□ 1.37
MSH5-203ENST00000375750 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.58■■□□□ 1.37
MSH5-203ENST00000375750 SOGA1O94964 1423 aa23.52■■□□□ 1.36
MSH5-203ENST00000375750 TTBK1Q5TCY1 1321 aaPredicted RBP23.52■■□□□ 1.36
MSH5-203ENST00000375750 SYNJ1O43426 1573 aa23.51■■□□□ 1.35
MSH5-203ENST00000375750 CFTRP13569 1480 aa23.5■■□□□ 1.35
MSH5-203ENST00000375750 RUSC2Q8N2Y8 1516 aa23.44■■□□□ 1.34
MSH5-203ENST00000375750 CCER1Q8TC90 406 aaPredicted RBP23.42■■□□□ 1.34
MSH5-203ENST00000375750 CADPSQ9ULU8 1353 aa23.41■■□□□ 1.34
MSH5-203ENST00000375750 DNAJC5BQ9UF47 199 aa23.38■■□□□ 1.33
MSH5-203ENST00000375750 CSRNP3Q8WYN3 585 aa23.34■■□□□ 1.33
MSH5-203ENST00000375750 TOP2BQ02880 1626 aa23.32■■□□□ 1.32
MSH5-203ENST00000375750 EEA1Q15075 1411 aa23.28■■□□□ 1.32
MSH5-203ENST00000375750 CUX1P39880 1505 aa23.28■■□□□ 1.32
MSH5-203ENST00000375750 BIVM-ERCC5R4GMW8 1640 aa23.24■■□□□ 1.31
MSH5-203ENST00000375750 NEUROD1Q13562 356 aa23.23■■□□□ 1.31
MSH5-203ENST00000375750 NESP48681 1621 aa23.23■■□□□ 1.31
MSH5-203ENST00000375750 PRDM2Q13029 1718 aa23.22■■□□□ 1.31
MSH5-203ENST00000375750 ACIN1Q9UKV3 1341 aaKnown RBP23.16■■□□□ 1.3
MSH5-203ENST00000375750 PELP1Q8IZL8 1130 aaKnown RBP23.16■■□□□ 1.3
MSH5-203ENST00000375750 FANCD2Q9BXW9 1451 aa23.15■■□□□ 1.3
MSH5-203ENST00000375750 UBTFP17480 764 aaKnown RBP23.15■■□□□ 1.3
MSH5-203ENST00000375750 DIEXFQ68CQ4 756 aaKnown RBP23.14■■□□□ 1.29
MSH5-203ENST00000375750 CEP162Q5TB80 1403 aa23.07■■□□□ 1.28
MSH5-203ENST00000375750 GOLGA3Q08378 1498 aa23.06■■□□□ 1.28
MSH5-203ENST00000375750 TNIKQ9UKE5 1360 aa23.06■■□□□ 1.28
MSH5-203ENST00000375750 CEP164Q9UPV0 1460 aa23.03■■□□□ 1.28
MSH5-203ENST00000375750 LAMC3Q9Y6N6 1575 aa23.03■■□□□ 1.28
MSH5-203ENST00000375750 GTF3C3Q9Y5Q9 886 aa23.02■■□□□ 1.28
MSH5-203ENST00000375750 FGD5Q6ZNL6 1462 aa22.99■■□□□ 1.27
MSH5-203ENST00000375750 RAPGEF2Q9Y4G8 1499 aa22.98■■□□□ 1.27
MSH5-203ENST00000375750 KIF21BO75037 1637 aa22.98■■□□□ 1.27
MSH5-203ENST00000375750 KIF27Q86VH2 1401 aa22.98■■□□□ 1.27
MSH5-203ENST00000375750 PDS5BQ9NTI5 1447 aa22.92■■□□□ 1.26
MSH5-203ENST00000375750 CUX2O14529 1486 aa22.92■■□□□ 1.26
MSH5-203ENST00000375750 TOPBP1Q92547 1522 aa22.91■■□□□ 1.26
MSH5-203ENST00000375750 DNMBPQ6XZF7 1577 aa22.9■■□□□ 1.26
MSH5-203ENST00000375750 PRXQ9BXM0 1461 aa22.88■■□□□ 1.25
MSH5-203ENST00000375750 RANGAP1P46060 587 aaPredicted RBP22.87■■□□□ 1.25
MSH5-203ENST00000375750 RAD54L2Q9Y4B4 1467 aa22.86■■□□□ 1.25
MSH5-203ENST00000375750 CENPBP07199 599 aaPredicted RBP22.86■■□□□ 1.25
MSH5-203ENST00000375750 URB2Q14146 1524 aaKnown RBP22.86■■□□□ 1.25
MSH5-203ENST00000375750 YTHDC1Q96MU7 727 aaKnown RBP22.84■■□□□ 1.25
MSH5-203ENST00000375750 POLA1P09884 1462 aaPredicted RBP22.84■■□□□ 1.25
MSH5-203ENST00000375750 HNRNPUL2Q1KMD3 747 aaKnown RBP22.84■■□□□ 1.25
MSH5-203ENST00000375750 IGF1RP08069 1367 aa22.82■■□□□ 1.24
MSH5-203ENST00000375750 KIF21AQ7Z4S6 1674 aa22.82■■□□□ 1.24
MSH5-203ENST00000375750 ZNF316A6NFI3 1004 aaPredicted RBP22.8■■□□□ 1.24
MSH5-203ENST00000375750 ERICH3Q5RHP9 1530 aa22.77■■□□□ 1.24
MSH5-203ENST00000375750 CLIP1P30622 1438 aa22.77■■□□□ 1.24
MSH5-203ENST00000375750 ABCA10Q8WWZ4 1543 aa22.73■■□□□ 1.23
MSH5-203ENST00000375750 CARMIL1Q5VZK9 1371 aa22.7■■□□□ 1.22
MSH5-203ENST00000375750 MIER1Q8N108 512 aa22.68■■□□□ 1.22
MSH5-203ENST00000375750 TDRD9Q8NDG6 1382 aaKnown RBP22.65■■□□□ 1.22
MSH5-203ENST00000375750 MRC2Q9UBG0 1479 aa22.6■■□□□ 1.21
MSH5-203ENST00000375750 VPS8Q8N3P4 1428 aa22.56■■□□□ 1.2
MSH5-203ENST00000375750 WDR97A6NE52 1622 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms