RNA–Protein interactions for RNA: ENST00000611067.4

SEMA3B-210, Transcript of semaphorin 3B, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SEMA3B, Length 2,292 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-210ENST00000611067 NISCHQ9Y2I1 1504 aa40.95■■■■■ 4.15
SEMA3B-210ENST00000611067 CCDC180Q9P1Z9 1646 aa35.66■■■■□ 3.3
SEMA3B-210ENST00000611067 ZCCHC6Q5VYS8 1495 aaKnown RBP34.43■■■■□ 3.1
SEMA3B-210ENST00000611067 DCAF8L2P0C7V8 631 aa33.89■■■■□ 3.02
SEMA3B-210ENST00000611067 DCAF1Q9Y4B6 1507 aa33.84■■■■□ 3.01
SEMA3B-210ENST00000611067 ABCC9O60706 1549 aa33.65■■■□□ 2.98
SEMA3B-210ENST00000611067 SHROOM4Q9ULL8 1493 aa33.58■■■□□ 2.97
SEMA3B-210ENST00000611067 MYO15BQ96JP2 1530 aa33.39■■■□□ 2.93
SEMA3B-210ENST00000611067 NACADO15069 1562 aa33.18■■■□□ 2.9
SEMA3B-210ENST00000611067 RB1CC1Q8TDY2 1594 aa32.89■■■□□ 2.86
SEMA3B-210ENST00000611067 SCRIBQ14160 1630 aa32.86■■■□□ 2.85
SEMA3B-210ENST00000611067 SUPT5HO00267 1087 aaKnown RBP32.38■■■□□ 2.77
SEMA3B-210ENST00000611067 UNC13AQ9UPW8 1703 aa32.22■■■□□ 2.75
SEMA3B-210ENST00000611067 BICRAQ9NZM4 1560 aa31.85■■■□□ 2.69
SEMA3B-210ENST00000611067 RSF1Q96T23 1441 aaPredicted RBP31.82■■■□□ 2.68
SEMA3B-210ENST00000611067 CECR2Q9BXF3 1484 aa31.81■■■□□ 2.68
SEMA3B-210ENST00000611067 HRCP23327 699 aa31.75■■■□□ 2.67
SEMA3B-210ENST00000611067 PABPN1Q86U42 306 aaKnown RBP eCLIP31.75■■■□□ 2.671e-7■■■□□ 16.1
SEMA3B-210ENST00000611067 MROH2BQ7Z745 1585 aa31.65■■■□□ 2.66
SEMA3B-210ENST00000611067 BAZ1AQ9NRL2 1556 aaPredicted RBP31.64■■■□□ 2.66
SEMA3B-210ENST00000611067 CHIC1Q5VXU3 224 aa31.51■■■□□ 2.63
SEMA3B-210ENST00000611067 SMARCA4P51532 1647 aa31.47■■■□□ 2.63
SEMA3B-210ENST00000611067 WIZO95785 1651 aa31.42■■■□□ 2.62
SEMA3B-210ENST00000611067 PCGF6Q9BYE7 350 aa31.21■■■□□ 2.59
SEMA3B-210ENST00000611067 TOP2AP11388 1531 aaKnown RBP31.09■■■□□ 2.57
SEMA3B-210ENST00000611067 PEG3Q9GZU2 1588 aa31.05■■■□□ 2.56
SEMA3B-210ENST00000611067 SMARCA2P51531 1590 aa30.92■■■□□ 2.54
SEMA3B-210ENST00000611067 EIF4G1Q04637 1599 aaKnown RBP30.92■■■□□ 2.54
SEMA3B-210ENST00000611067 ATAD2BQ9ULI0 1458 aa30.91■■■□□ 2.54
SEMA3B-210ENST00000611067 PPARGC1BQ86YN6 1023 aaKnown RBP30.9■■■□□ 2.54
SEMA3B-210ENST00000611067 BAZ1BQ9UIG0 1483 aaKnown RBP30.79■■■□□ 2.52
SEMA3B-210ENST00000611067 CCDC88BA6NC98 1476 aa30.76■■■□□ 2.52
SEMA3B-210ENST00000611067 NCAPD3P42695 1498 aa30.61■■■□□ 2.49
SEMA3B-210ENST00000611067 HMGXB3Q12766 1538 aa30.6■■■□□ 2.49
SEMA3B-210ENST00000611067 LOC105371045A0A1W2PR82 267 aa30.57■■■□□ 2.48
SEMA3B-210ENST00000611067 TRIM26Q12899 539 aaPredicted RBP30.51■■■□□ 2.47
SEMA3B-210ENST00000611067 CC2D2AQ9P2K1 1620 aa30.43■■■□□ 2.46
SEMA3B-210ENST00000611067 TRIM41Q8WV44 630 aa30.43■■■□□ 2.46
SEMA3B-210ENST00000611067 ABCC8Q09428 1581 aa30.19■■■□□ 2.42
SEMA3B-210ENST00000611067 ZEB1P37275 1124 aaPredicted RBP30.19■■■□□ 2.42
SEMA3B-210ENST00000611067 PELP1Q8IZL8 1130 aaKnown RBP30.01■■■□□ 2.39
SEMA3B-210ENST00000611067 WRNQ14191 1432 aaPredicted RBP eCLIP29.99■■■□□ 2.39
SEMA3B-210ENST00000611067 CFTRP13569 1480 aa29.98■■■□□ 2.39
SEMA3B-210ENST00000611067 FAM9AQ8IZU1 332 aaPredicted RBP29.89■■■□□ 2.38
SEMA3B-210ENST00000611067 PRDM2Q13029 1718 aa29.86■■■□□ 2.37
SEMA3B-210ENST00000611067 CADPSQ9ULU8 1353 aa29.86■■■□□ 2.37
SEMA3B-210ENST00000611067 SYNJ1O43426 1573 aa29.83■■■□□ 2.37
SEMA3B-210ENST00000611067 TOP2BQ02880 1626 aa29.71■■■□□ 2.35
SEMA3B-210ENST00000611067 BIVM-ERCC5R4GMW8 1640 aa29.67■■■□□ 2.34
SEMA3B-210ENST00000611067 SCAF1Q9H7N4 1312 aaKnown RBP29.66■■■□□ 2.34
SEMA3B-210ENST00000611067 SOGA1O94964 1423 aa29.64■■■□□ 2.33
SEMA3B-210ENST00000611067 EEA1Q15075 1411 aa29.62■■■□□ 2.33
SEMA3B-210ENST00000611067 CUX1P39880 1505 aa29.59■■■□□ 2.33
SEMA3B-210ENST00000611067 LAMC3Q9Y6N6 1575 aa29.58■■■□□ 2.33
SEMA3B-210ENST00000611067 DNAJC5BQ9UF47 199 aa29.58■■■□□ 2.33
SEMA3B-210ENST00000611067 NESP48681 1621 aa29.56■■■□□ 2.32
SEMA3B-210ENST00000611067 FANCD2Q9BXW9 1451 aa29.55■■■□□ 2.32
SEMA3B-210ENST00000611067 RUSC2Q8N2Y8 1516 aa29.5■■■□□ 2.31
SEMA3B-210ENST00000611067 EHMT2Q96KQ7 1210 aa29.5■■■□□ 2.31
SEMA3B-210ENST00000611067 CSRNP3Q8WYN3 585 aa29.45■■■□□ 2.3
SEMA3B-210ENST00000611067 PDS5BQ9NTI5 1447 aa29.36■■■□□ 2.29
SEMA3B-210ENST00000611067 CEP164Q9UPV0 1460 aa29.36■■■□□ 2.29
SEMA3B-210ENST00000611067 DNMBPQ6XZF7 1577 aa29.3■■■□□ 2.28
SEMA3B-210ENST00000611067 FGD5Q6ZNL6 1462 aa29.27■■■□□ 2.28
SEMA3B-210ENST00000611067 GOLGA3Q08378 1498 aa29.23■■■□□ 2.27
SEMA3B-210ENST00000611067 TOPBP1Q92547 1522 aa29.23■■■□□ 2.27
SEMA3B-210ENST00000611067 KIF27Q86VH2 1401 aa29.22■■■□□ 2.27
SEMA3B-210ENST00000611067 KIF21AQ7Z4S6 1674 aa29.22■■■□□ 2.27
SEMA3B-210ENST00000611067 KIF21BO75037 1637 aa29.22■■■□□ 2.27
SEMA3B-210ENST00000611067 ACIN1Q9UKV3 1341 aaKnown RBP29.18■■■□□ 2.26
SEMA3B-210ENST00000611067 URB2Q14146 1524 aaKnown RBP29.14■■■□□ 2.26
SEMA3B-210ENST00000611067 UBTFP17480 764 aaKnown RBP29.14■■■□□ 2.25
SEMA3B-210ENST00000611067 TNIKQ9UKE5 1360 aa29.13■■■□□ 2.25
SEMA3B-210ENST00000611067 CUX2O14529 1486 aa29.12■■■□□ 2.25
SEMA3B-210ENST00000611067 POLA1P09884 1462 aaPredicted RBP29.11■■■□□ 2.25
SEMA3B-210ENST00000611067 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.09■■■□□ 2.25
SEMA3B-210ENST00000611067 CCER1Q8TC90 406 aaPredicted RBP29.08■■■□□ 2.25
SEMA3B-210ENST00000611067 NEUROD1Q13562 356 aa29.04■■■□□ 2.24
SEMA3B-210ENST00000611067 RAPGEF2Q9Y4G8 1499 aa29.04■■■□□ 2.24
SEMA3B-210ENST00000611067 CEP162Q5TB80 1403 aa29.02■■■□□ 2.24
SEMA3B-210ENST00000611067 PRXQ9BXM0 1461 aa29.01■■■□□ 2.24
SEMA3B-210ENST00000611067 RAD54L2Q9Y4B4 1467 aa29.01■■■□□ 2.23
SEMA3B-210ENST00000611067 ERICH3Q5RHP9 1530 aa29■■■□□ 2.23
SEMA3B-210ENST00000611067 ABCA10Q8WWZ4 1543 aa28.99■■■□□ 2.23
SEMA3B-210ENST00000611067 MRC2Q9UBG0 1479 aa28.97■■■□□ 2.23
SEMA3B-210ENST00000611067 DIEXFQ68CQ4 756 aaKnown RBP28.92■■■□□ 2.22
SEMA3B-210ENST00000611067 CENPBP07199 599 aaPredicted RBP28.91■■■□□ 2.22
SEMA3B-210ENST00000611067 IGF1RP08069 1367 aa28.9■■■□□ 2.22
SEMA3B-210ENST00000611067 WDR97A6NE52 1622 aa28.88■■■□□ 2.21
SEMA3B-210ENST00000611067 ERCC6Q03468 1493 aa28.88■■■□□ 2.21
SEMA3B-210ENST00000611067 GTF3C3Q9Y5Q9 886 aa28.83■■■□□ 2.21
SEMA3B-210ENST00000611067 CARMIL1Q5VZK9 1371 aa28.8■■■□□ 2.2
SEMA3B-210ENST00000611067 WDR62O43379 1518 aa28.79■■■□□ 2.2
SEMA3B-210ENST00000611067 CLIP1P30622 1438 aa28.77■■■□□ 2.2
SEMA3B-210ENST00000611067 TARBP1Q13395 1621 aaKnown RBP28.77■■■□□ 2.2
SEMA3B-210ENST00000611067 MYT1Q01538 1121 aa28.75■■■□□ 2.19
SEMA3B-210ENST00000611067 ABCA5Q8WWZ7 1642 aa28.75■■■□□ 2.19
SEMA3B-210ENST00000611067 TDRD9Q8NDG6 1382 aaKnown RBP28.73■■■□□ 2.19
SEMA3B-210ENST00000611067 CUL7Q14999 1698 aa28.71■■■□□ 2.19
SEMA3B-210ENST00000611067 GAPVD1Q14C86 1478 aa28.7■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms