Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 MTMR1-209ENST00000485376 2973 ntTSL 1 (best)23.77■■□□□ 1.41e-8■■■□□ 16.3
YBX3P16989 MTMR1-210ENST00000488357 1967 ntTSL 223.21■■□□□ 1.311e-8■■■□□ 16.3
YBX3P16989 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.51■□□□□ 0.391e-8■■■□□ 16.3
YBX3P16989 MTMR1-213ENST00000493995 700 ntTSL 57.4□□□□□ -1.221e-8■■■□□ 16.3
YBX3P16989 MTMR1-212ENST00000493480 448 ntTSL 27.4□□□□□ -1.221e-8■■■□□ 16.3
YBX3P16989 MTMR1-203ENST00000429965 564 ntTSL 56.47□□□□□ -1.371e-8■■■□□ 16.3
YBX3P16989 MTMR1-206ENST00000438018 397 ntTSL 56.23□□□□□ -1.411e-8■■■□□ 16.3
YBX3P16989 MTMR1-205ENST00000436701 448 ntTSL 56.18□□□□□ -1.421e-8■■■□□ 16.3
YBX3P16989 MTMR1-204ENST00000434699 549 ntTSL 56.13□□□□□ -1.431e-8■■■□□ 16.3
YBX3P16989 MTMR1-207ENST00000439546 573 ntTSL 45.31□□□□□ -1.561e-8■■■□□ 16.3
YBX3P16989 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.073e-7■■■□□ 16.3
YBX3P16989 DPM2-203ENST00000470181 928 ntTSL 1 (best)18.47■□□□□ 0.553e-7■■■□□ 16.3
YBX3P16989 DPM2-205ENST00000495270 1662 ntTSL 1 (best)17.97■□□□□ 0.473e-7■■■□□ 16.3
YBX3P16989 DPM2-204ENST00000473360 744 ntTSL 517.52■□□□□ 0.43e-7■■■□□ 16.3
YBX3P16989 MCM3-204ENST00000476448 982 ntTSL 220.23■□□□□ 0.831e-8■■■□□ 16.3
YBX3P16989 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC16.59■□□□□ 0.256e-7■■■□□ 16.3
YBX3P16989 COPS5-201ENST00000357849 1480 ntAPPRIS P1 TSL 1 (best) BASIC12.15□□□□□ -0.466e-7■■■□□ 16.3
YBX3P16989 COPS5-205ENST00000518374 1451 ntTSL 211.44□□□□□ -0.586e-7■■■□□ 16.3
YBX3P16989 COPS5-211ENST00000521509 3826 ntTSL 59.67□□□□□ -0.866e-7■■■□□ 16.3
YBX3P16989 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.115e-11■■■□□ 16.3
YBX3P16989 USP3-204ENST00000540797 5474 ntTSL 2 BASIC14.53□□□□□ -0.083e-6■■■□□ 16.3
YBX3P16989 USP3-213ENST00000559711 1693 ntTSL 5 BASIC14.41□□□□□ -0.13e-6■■■□□ 16.3
YBX3P16989 USP3-202ENST00000380324 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.33e-6■■■□□ 16.3
YBX3P16989 USP3-203ENST00000538686 2077 ntTSL 1 (best)12.74□□□□□ -0.373e-6■■■□□ 16.3
YBX3P16989 USP3-216ENST00000559873 584 ntTSL 512.54□□□□□ -0.43e-6■■■□□ 16.3
YBX3P16989 USP3-219ENST00000561326 543 ntTSL 412.08□□□□□ -0.483e-6■■■□□ 16.3
YBX3P16989 USP3-206ENST00000558157 2439 ntTSL 1 (best)11.94□□□□□ -0.53e-6■■■□□ 16.3
YBX3P16989 USP3-208ENST00000558285 1742 ntTSL 1 (best) BASIC11.15□□□□□ -0.623e-6■■■□□ 16.3
YBX3P16989 USP3-211ENST00000559257 2217 ntTSL 58.48□□□□□ -1.053e-6■■■□□ 16.3
YBX3P16989 USP3-201ENST00000268049 5311 ntTSL 5 BASIC8.17□□□□□ -1.13e-6■■■□□ 16.3
YBX3P16989 USP3-210ENST00000559192 5499 ntTSL 1 (best)7.18□□□□□ -1.263e-6■■■□□ 16.3
YBX3P16989 CLPTM1-205ENST00000586915 775 ntTSL 222.32■■□□□ 1.167e-9■■■□□ 16.3
YBX3P16989 CLPTM1-211ENST00000589347 638 ntTSL 314.45□□□□□ -0.17e-9■■■□□ 16.3
YBX3P16989 GANAB-202ENST00000356638 3608 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.682e-11■■■□□ 16.3
YBX3P16989 DOCK8-201ENST00000382329 6124 ntTSL 1 (best) BASIC11.66□□□□□ -0.548e-8■■■□□ 16.3
YBX3P16989 ARL5A-204ENST00000458140 1076 ntTSL 527.67■■■□□ 2.028e-7■■■□□ 16.3
YBX3P16989 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC27.64■■■□□ 2.028e-7■■■□□ 16.3
YBX3P16989 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.68e-7■■■□□ 16.3
YBX3P16989 AC068547.1-202ENST00000637224 2827 ntAPPRIS ALT2 TSL 59.57□□□□□ -0.888e-7■■■□□ 16.3
YBX3P16989 AC068547.1-201ENST00000636024 1303 ntAPPRIS ALT2 TSL 58.35□□□□□ -1.078e-7■■■□□ 16.3
YBX3P16989 ARL5A-203ENST00000446896 1268 ntTSL 27.92□□□□□ -1.148e-7■■■□□ 16.3
YBX3P16989 TMEM132D-AS1-205ENST00000540739 490 ntTSL 1 (best)5.8□□□□□ -1.483e-8■■■□□ 16.3
YBX3P16989 FADS1-217ENST00000544309 581 ntTSL 324.64■■□□□ 1.543e-13■■■□□ 16.3
YBX3P16989 IDH3G-207ENST00000454076 739 ntTSL 1 (best)17.67■□□□□ 0.427e-9■■■□□ 16.3
YBX3P16989 UBE3A-209ENST00000625778 3217 ntTSL 5 BASIC13.92□□□□□ -0.189e-7■■■□□ 16.3
YBX3P16989 ENO1-202ENST00000464920 2266 ntTSL 1 (best)14.9□□□□□ -0.021e-56■■■□□ 16.3
YBX3P16989 ATIC-207ENST00000443953 2187 ntTSL 222.66■■□□□ 1.227e-7■■■□□ 16.3
YBX3P16989 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC20.32■□□□□ 0.847e-7■■■□□ 16.3
YBX3P16989 ATIC-201ENST00000236959 2213 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.217e-7■■■□□ 16.3
YBX3P16989 KMT2A-201ENST00000389506 13655 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.561e-6■■■□□ 16.3
YBX3P16989 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.181e-6■■■□□ 16.3
YBX3P16989 ST6GAL1-220ENST00000470633 4893 ntTSL 27.25□□□□□ -1.253e-9■■■□□ 16.3
YBX3P16989 AC068547.1-203ENST00000637559 1373 ntAPPRIS P5 TSL 5 BASIC12.51□□□□□ -0.412e-6■■■□□ 16.3
YBX3P16989 SEC61A1-201ENST00000243253 3635 ntAPPRIS P1 TSL 1 (best) BASIC12.17□□□□□ -0.463e-19■■■□□ 16.3
YBX3P16989 SEC61A1-205ENST00000483956 3046 ntTSL 1 (best)11.59□□□□□ -0.553e-19■■■□□ 16.3
YBX3P16989 SEC61A1-202ENST00000424880 3238 ntTSL 2 BASIC11.3□□□□□ -0.63e-19■■■□□ 16.3
YBX3P16989 CACUL1-206ENST00000493518 3217 ntTSL 1 (best)15.82■□□□□ 0.125e-7■■■□□ 16.3
YBX3P16989 TMEM106B-205ENST00000444443 584 ntTSL 427.1■■□□□ 1.933e-6■■■□□ 16.3
YBX3P16989 TMEM106B-203ENST00000420833 1492 ntTSL 1 (best)19.09■□□□□ 0.653e-6■■■□□ 16.3
YBX3P16989 TMEM106B-202ENST00000396668 2126 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.033e-6■■■□□ 16.3
YBX3P16989 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.643e-6■■■□□ 16.3
YBX3P16989 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.6■□□□□ 0.572e-6■■■□□ 16.3
YBX3P16989 HIPK1-203ENST00000369553 2883 ntTSL 1 (best) BASIC10.88□□□□□ -0.672e-6■■■□□ 16.3
YBX3P16989 HIPK1-206ENST00000369559 3424 ntTSL 1 (best) BASIC10.23□□□□□ -0.772e-6■■■□□ 16.3
YBX3P16989 HIPK1-208ENST00000426820 4112 ntAPPRIS P1 TSL 2 BASIC9.97□□□□□ -0.812e-6■■■□□ 16.3
YBX3P16989 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.69□□□□□ -1.182e-6■■■□□ 16.3
YBX3P16989 STAMBP-204ENST00000409707 1649 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.222e-6■■■□□ 16.3
YBX3P16989 STAMBP-203ENST00000394073 6386 ntAPPRIS P1 TSL 1 (best) BASIC9.16□□□□□ -0.942e-6■■■□□ 16.3
YBX3P16989 STAMBP-202ENST00000394070 6691 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.042e-6■■■□□ 16.3
YBX3P16989 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.12e-6■■■□□ 16.3
YBX3P16989 SHANK2-209ENST00000445654 522 ntTSL 320.01■□□□□ 0.791e-6■■■□□ 16.3
YBX3P16989 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.61■□□□□ 0.571e-6■■■□□ 16.3
YBX3P16989 SHANK2-210ENST00000449116 939 ntTSL 1 (best) BASIC17.9■□□□□ 0.461e-6■■■□□ 16.3
YBX3P16989 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC17.72■□□□□ 0.431e-6■■■□□ 16.3
YBX3P16989 SHANK2-205ENST00000412252 1376 ntTSL 515.28■□□□□ 0.041e-6■■■□□ 16.3
YBX3P16989 SHANK2-208ENST00000426687 460 ntTSL 513.42□□□□□ -0.261e-6■■■□□ 16.3
YBX3P16989 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC12.15□□□□□ -0.461e-6■■■□□ 16.3
YBX3P16989 SHANK2-201ENST00000338508 7271 ntTSL 5 BASIC11.95□□□□□ -0.51e-6■■■□□ 16.3
YBX3P16989 SHANK2-211ENST00000449833 8850 ntTSL 5 BASIC11.5□□□□□ -0.571e-6■■■□□ 16.3
YBX3P16989 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.15□□□□□ -1.268e-7■■■□□ 16.3
YBX3P16989 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC21.94■■□□□ 1.14e-12■■■□□ 16.3
YBX3P16989 SSR4-208ENST00000471880 785 ntTSL 519.51■□□□□ 0.714e-12■■■□□ 16.3
YBX3P16989 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.694e-12■■■□□ 16.3
YBX3P16989 SSR4-203ENST00000370086 643 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.644e-12■■■□□ 16.3
YBX3P16989 SSR4-209ENST00000482902 2409 ntTSL 218.23■□□□□ 0.514e-12■■■□□ 16.3
YBX3P16989 SSR4-210ENST00000485612 701 ntTSL 217.77■□□□□ 0.444e-12■■■□□ 16.3
YBX3P16989 SSR4-211ENST00000486204 658 ntTSL 317.77■□□□□ 0.444e-12■■■□□ 16.3
YBX3P16989 SSR4-202ENST00000370085 526 ntTSL 2 BASIC17.32■□□□□ 0.364e-12■■■□□ 16.3
YBX3P16989 SSR4-206ENST00000460616 2482 ntTSL 216.59■□□□□ 0.254e-12■■■□□ 16.3
YBX3P16989 PDLIM1-202ENST00000477757 850 ntTSL 228.89■■■□□ 2.224e-10■■■□□ 16.3
YBX3P16989 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.974e-10■■■□□ 16.3
YBX3P16989 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.121e-6■■■□□ 16.3
YBX3P16989 UBL4A-204ENST00000421431 1652 ntTSL 519.43■□□□□ 0.71e-6■■■□□ 16.3
YBX3P16989 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19.39■□□□□ 0.691e-6■■■□□ 16.3
YBX3P16989 SLC25A5-204ENST00000475354 483 ntTSL 514.67□□□□□ -0.065e-24■■■□□ 16.3
YBX3P16989 NIPBL-204ENST00000504430 3455 ntTSL 25.93□□□□□ -1.465e-7■■■□□ 16.3
YBX3P16989 C19orf54-204ENST00000594163 519 ntTSL 39.07□□□□□ -0.969e-8■■■□□ 16.3
YBX3P16989 PAPOLA-205ENST00000553689 2267 ntTSL 1 (best)19.56■□□□□ 0.721e-6■■■□□ 16.3
YBX3P16989 PAPOLA-219ENST00000556283 644 ntTSL 37.71□□□□□ -1.181e-6■■■□□ 16.3
YBX3P16989 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC7.62□□□□□ -1.191e-6■■■□□ 16.3
Retrieved 100 of 29,075 protein–RNA pairs in 390.3 ms