RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 NISCHQ9Y2I1 1504 aa14.48□□□□□ -0.09
USP3-201ENST00000268049 DCAF8L2P0C7V8 631 aa14.07□□□□□ -0.16
USP3-201ENST00000268049 FAM9AQ8IZU1 332 aaPredicted RBP13.26□□□□□ -0.29
USP3-201ENST00000268049 SHROOM4Q9ULL8 1493 aa12.89□□□□□ -0.35
USP3-201ENST00000268049 SUPT5HO00267 1087 aaKnown RBP12.72□□□□□ -0.37
USP3-201ENST00000268049 ABCC9O60706 1549 aa12.71□□□□□ -0.37
USP3-201ENST00000268049 MYT1Q01538 1121 aa12.47□□□□□ -0.41
USP3-201ENST00000268049 PELP1Q8IZL8 1130 aaKnown RBP12.46□□□□□ -0.42
USP3-201ENST00000268049 APLP2Q06481 763 aa12.41□□□□□ -0.42
USP3-201ENST00000268049 PABPN1Q86U42 306 aaKnown RBP eCLIP12.33□□□□□ -0.44
USP3-201ENST00000268049 CCDC180Q9P1Z9 1646 aa12.29□□□□□ -0.44
USP3-201ENST00000268049 MYT1LQ9UL68 1186 aa12.2□□□□□ -0.46
USP3-201ENST00000268049 ATP1B4Q9UN42 357 aaPredicted RBP12.06□□□□□ -0.48
USP3-201ENST00000268049 EHMT2Q96KQ7 1210 aa12.04□□□□□ -0.48
USP3-201ENST00000268049 RB1CC1Q8TDY2 1594 aa12□□□□□ -0.49
USP3-201ENST00000268049 ZCCHC6Q5VYS8 1495 aaKnown RBP11.97□□□□□ -0.49
USP3-201ENST00000268049 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.96□□□□□ -0.5
USP3-201ENST00000268049 HNRNPUL2Q1KMD3 747 aaKnown RBP11.96□□□□□ -0.5
USP3-201ENST00000268049 ERICH6Q7L0X2 663 aa11.94□□□□□ -0.5
USP3-201ENST00000268049 SCRIBQ14160 1630 aa11.91□□□□□ -0.5
USP3-201ENST00000268049 TRIM41Q8WV44 630 aa11.91□□□□□ -0.5
USP3-201ENST00000268049 NACADO15069 1562 aa11.89□□□□□ -0.51
USP3-201ENST00000268049 CENPBP07199 599 aaPredicted RBP11.85□□□□□ -0.51
USP3-201ENST00000268049 TTBK1Q5TCY1 1321 aaPredicted RBP11.84□□□□□ -0.51
USP3-201ENST00000268049 RANGAP1P46060 587 aaPredicted RBP11.79□□□□□ -0.52
USP3-201ENST00000268049 CCER1Q8TC90 406 aaPredicted RBP11.79□□□□□ -0.52
USP3-201ENST00000268049 NPM1P06748 294 aaKnown RBP eCLIP11.76□□□□□ -0.53
USP3-201ENST00000268049 FBLN2P98095 1184 aa11.73□□□□□ -0.53
USP3-201ENST00000268049 ESF1Q9H501 851 aaKnown RBP11.73□□□□□ -0.53
USP3-201ENST00000268049 UBTFP17480 764 aaKnown RBP11.7□□□□□ -0.54
USP3-201ENST00000268049 DCAF1Q9Y4B6 1507 aa11.62□□□□□ -0.55
USP3-201ENST00000268049 CHIC1Q5VXU3 224 aa11.62□□□□□ -0.55
USP3-201ENST00000268049 PCGF6Q9BYE7 350 aa11.59□□□□□ -0.55
USP3-201ENST00000268049 ZEB1P37275 1124 aaPredicted RBP11.56□□□□□ -0.56
USP3-201ENST00000268049 BCANQ96GW7 911 aa11.52□□□□□ -0.57
USP3-201ENST00000268049 MYO15BQ96JP2 1530 aa11.48□□□□□ -0.57
USP3-201ENST00000268049 AEBP2Q6ZN18 517 aaPredicted RBP11.46□□□□□ -0.57
USP3-201ENST00000268049 BAZ1BQ9UIG0 1483 aaKnown RBP11.43□□□□□ -0.58
USP3-201ENST00000268049 NEFLP07196 543 aa11.42□□□□□ -0.58
USP3-201ENST00000268049 TRHP20396 242 aaPredicted RBP11.41□□□□□ -0.58
USP3-201ENST00000268049 SLC4A1APQ9BWU0 796 aaKnown RBP11.37□□□□□ -0.59
USP3-201ENST00000268049 BAZ1AQ9NRL2 1556 aaPredicted RBP11.37□□□□□ -0.59
USP3-201ENST00000268049 YTHDC1Q96MU7 727 aaKnown RBP11.36□□□□□ -0.59
USP3-201ENST00000268049 ERCC6Q03468 1493 aa11.36□□□□□ -0.59
USP3-201ENST00000268049 RSF1Q96T23 1441 aaPredicted RBP11.33□□□□□ -0.6
USP3-201ENST00000268049 STAG3Q9UJ98 1225 aa11.33□□□□□ -0.6
USP3-201ENST00000268049 PLPPR3Q6T4P5 718 aa11.33□□□□□ -0.6
USP3-201ENST00000268049 CDK11AQ9UQ88 783 aaPredicted RBP11.33□□□□□ -0.6
USP3-201ENST00000268049 CECR2Q9BXF3 1484 aa11.32□□□□□ -0.6
USP3-201ENST00000268049 HRCP23327 699 aa11.26□□□□□ -0.61
USP3-201ENST00000268049 CHMP7Q8WUX9 453 aaPredicted RBP11.25□□□□□ -0.61
USP3-201ENST00000268049 SMARCA2P51531 1590 aa11.25□□□□□ -0.61
USP3-201ENST00000268049 LOC105371045A0A1W2PR82 267 aa11.21□□□□□ -0.62
USP3-201ENST00000268049 CSRNP3Q8WYN3 585 aa11.2□□□□□ -0.62
USP3-201ENST00000268049 ARID4BQ4LE39 1312 aaPredicted RBP11.2□□□□□ -0.62
USP3-201ENST00000268049 PDS5BQ9NTI5 1447 aa11.17□□□□□ -0.62
USP3-201ENST00000268049 MROH2BQ7Z745 1585 aa11.16□□□□□ -0.62
USP3-201ENST00000268049 PPARGC1BQ86YN6 1023 aaKnown RBP11.16□□□□□ -0.62
USP3-201ENST00000268049 RTL5Q5HYW3 569 aaPredicted RBP11.16□□□□□ -0.62
USP3-201ENST00000268049 P3H3Q8IVL6 736 aa11.15□□□□□ -0.63
USP3-201ENST00000268049 DAXXQ9UER7 740 aaPredicted RBP11.14□□□□□ -0.63
USP3-201ENST00000268049 ITGAEP38570 1179 aa11.12□□□□□ -0.63
USP3-201ENST00000268049 POLR3GLQ9BT43 218 aa11.12□□□□□ -0.63
USP3-201ENST00000268049 ATAD2BQ9ULI0 1458 aa11.11□□□□□ -0.63
USP3-201ENST00000268049 NEFMP07197 916 aa11.11□□□□□ -0.63
USP3-201ENST00000268049 ARID3CA6NKF2 412 aa11.1□□□□□ -0.63
USP3-201ENST00000268049 C14orf37Q86TY3 774 aa11.09□□□□□ -0.63
USP3-201ENST00000268049 HAP1P54257 671 aaPredicted RBP11.07□□□□□ -0.64
USP3-201ENST00000268049 WRNQ14191 1432 aaPredicted RBP eCLIP11.07□□□□□ -0.64
USP3-201ENST00000268049 TRIM52Q96A61 297 aa11.07□□□□□ -0.64
USP3-201ENST00000268049 CADPSQ9ULU8 1353 aa11.06□□□□□ -0.64
USP3-201ENST00000268049 EIF4G1Q04637 1599 aaKnown RBP11.06□□□□□ -0.64
USP3-201ENST00000268049 SMARCA4P51532 1647 aa11.05□□□□□ -0.64
USP3-201ENST00000268049 SCAF1Q9H7N4 1312 aaKnown RBP11.05□□□□□ -0.64
USP3-201ENST00000268049 SLC24A1O60721 1099 aa11.04□□□□□ -0.64
USP3-201ENST00000268049 CCDC88BA6NC98 1476 aa11.03□□□□□ -0.64
USP3-201ENST00000268049 ZNF777Q9ULD5 760 aaPredicted RBP11.02□□□□□ -0.64
USP3-201ENST00000268049 FOXD1Q16676 465 aa11.01□□□□□ -0.65
USP3-201ENST00000268049 FAM50AQ14320 339 aaKnown RBP11.01□□□□□ -0.65
USP3-201ENST00000268049 CHGAP10645 457 aaKnown RBP11□□□□□ -0.65
USP3-201ENST00000268049 NPM2Q86SE8 214 aaKnown RBP11□□□□□ -0.65
USP3-201ENST00000268049 TOP2AP11388 1531 aaKnown RBP10.99□□□□□ -0.65
USP3-201ENST00000268049 WIZO95785 1651 aa10.99□□□□□ -0.65
USP3-201ENST00000268049 PPP1R15AO75807 674 aaPredicted RBP10.99□□□□□ -0.65
USP3-201ENST00000268049 KIF27Q86VH2 1401 aa10.98□□□□□ -0.65
USP3-201ENST00000268049 DCAF8L1A6NGE4 600 aa10.98□□□□□ -0.65
USP3-201ENST00000268049 NCAPD3P42695 1498 aa10.97□□□□□ -0.65
USP3-201ENST00000268049 A0A0G2JS52 829 aa10.96□□□□□ -0.66
USP3-201ENST00000268049 CEP164Q9UPV0 1460 aa10.96□□□□□ -0.66
USP3-201ENST00000268049 GTF3C3Q9Y5Q9 886 aa10.96□□□□□ -0.66
USP3-201ENST00000268049 CC2D2AQ9P2K1 1620 aa10.95□□□□□ -0.66
USP3-201ENST00000268049 DNAJC5BQ9UF47 199 aa10.95□□□□□ -0.66
USP3-201ENST00000268049 TRIM26Q12899 539 aaPredicted RBP10.95□□□□□ -0.66
USP3-201ENST00000268049 SOGA1O94964 1423 aa10.92□□□□□ -0.66
USP3-201ENST00000268049 GLIPR1L2Q4G1C9 344 aa10.91□□□□□ -0.66
USP3-201ENST00000268049 ZBTB47Q9UFB7 747 aaPredicted RBP10.91□□□□□ -0.66
USP3-201ENST00000268049 CUX2O14529 1486 aa10.9□□□□□ -0.66
USP3-201ENST00000268049 EIF5BO60841 1220 aaKnown RBP10.9□□□□□ -0.66
USP3-201ENST00000268049 FANCD2Q9BXW9 1451 aa10.9□□□□□ -0.66
USP3-201ENST00000268049 EEA1Q15075 1411 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 75.5 ms