RNA–Protein interactions for RNA: ENST00000424880.2

SEC61A1-202, Transcript of Sec61 translocon alpha 1 subunit, humanhuman

TSL 2 BASIC

Gene SEC61A1, Length 3,238 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A1-202ENST00000424880 NISCHQ9Y2I1 1504 aa22.01■■□□□ 1.11
SEC61A1-202ENST00000424880 CCDC180Q9P1Z9 1646 aa19.29■□□□□ 0.68
SEC61A1-202ENST00000424880 PPARGC1BQ86YN6 1023 aaKnown RBP19.21■□□□□ 0.67
SEC61A1-202ENST00000424880 HRCP23327 699 aa19.18■□□□□ 0.66
SEC61A1-202ENST00000424880 PCGF6Q9BYE7 350 aa19.02■□□□□ 0.64
SEC61A1-202ENST00000424880 SHROOM4Q9ULL8 1493 aa18.97■□□□□ 0.63
SEC61A1-202ENST00000424880 SUPT5HO00267 1087 aaKnown RBP18.96■□□□□ 0.63
SEC61A1-202ENST00000424880 PELP1Q8IZL8 1130 aaKnown RBP18.86■□□□□ 0.61
SEC61A1-202ENST00000424880 MYO15BQ96JP2 1530 aa18.58■□□□□ 0.57
SEC61A1-202ENST00000424880 ZCCHC6Q5VYS8 1495 aaKnown RBP18.53■□□□□ 0.56
SEC61A1-202ENST00000424880 SCAF1Q9H7N4 1312 aaKnown RBP18.42■□□□□ 0.54
SEC61A1-202ENST00000424880 CHIC1Q5VXU3 224 aa18.4■□□□□ 0.54
SEC61A1-202ENST00000424880 ABCC9O60706 1549 aa18.37■□□□□ 0.53
SEC61A1-202ENST00000424880 LOC105371045A0A1W2PR82 267 aa18.31■□□□□ 0.52
SEC61A1-202ENST00000424880 DCAF8L2P0C7V8 631 aa18.31■□□□□ 0.52
SEC61A1-202ENST00000424880 MYT1Q01538 1121 aa18.3■□□□□ 0.52
SEC61A1-202ENST00000424880 DCAF1Q9Y4B6 1507 aa18.07■□□□□ 0.48
SEC61A1-202ENST00000424880 NACADO15069 1562 aa18.02■□□□□ 0.48
SEC61A1-202ENST00000424880 RB1CC1Q8TDY2 1594 aa18.02■□□□□ 0.48
SEC61A1-202ENST00000424880 TRIM26Q12899 539 aaPredicted RBP18.02■□□□□ 0.48
SEC61A1-202ENST00000424880 EHMT2Q96KQ7 1210 aa17.89■□□□□ 0.46
SEC61A1-202ENST00000424880 NEUROD1Q13562 356 aa17.89■□□□□ 0.45
SEC61A1-202ENST00000424880 GTF3C3Q9Y5Q9 886 aa17.82■□□□□ 0.44
SEC61A1-202ENST00000424880 ACIN1Q9UKV3 1341 aaKnown RBP17.77■□□□□ 0.44
SEC61A1-202ENST00000424880 ZEB1P37275 1124 aaPredicted RBP17.73■□□□□ 0.43
SEC61A1-202ENST00000424880 UNC13AQ9UPW8 1703 aa17.68■□□□□ 0.42
SEC61A1-202ENST00000424880 FAM9AQ8IZU1 332 aaPredicted RBP17.66■□□□□ 0.42
SEC61A1-202ENST00000424880 SCRIBQ14160 1630 aa17.62■□□□□ 0.41
SEC61A1-202ENST00000424880 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.59■□□□□ 0.41
SEC61A1-202ENST00000424880 YTHDC1Q96MU7 727 aaKnown RBP17.54■□□□□ 0.4
SEC61A1-202ENST00000424880 DIEXFQ68CQ4 756 aaKnown RBP17.47■□□□□ 0.39
SEC61A1-202ENST00000424880 CENPBP07199 599 aaPredicted RBP17.45■□□□□ 0.38
SEC61A1-202ENST00000424880 BICRAQ9NZM4 1560 aa17.45■□□□□ 0.38
SEC61A1-202ENST00000424880 CCER1Q8TC90 406 aaPredicted RBP17.44■□□□□ 0.38
SEC61A1-202ENST00000424880 TTBK1Q5TCY1 1321 aaPredicted RBP17.43■□□□□ 0.38
SEC61A1-202ENST00000424880 TRIM41Q8WV44 630 aa17.28■□□□□ 0.36
SEC61A1-202ENST00000424880 RSF1Q96T23 1441 aaPredicted RBP17.27■□□□□ 0.35
SEC61A1-202ENST00000424880 CECR2Q9BXF3 1484 aa17.22■□□□□ 0.35
SEC61A1-202ENST00000424880 MROH2BQ7Z745 1585 aa17.1■□□□□ 0.33
SEC61A1-202ENST00000424880 MIER1Q8N108 512 aa17.08■□□□□ 0.32
SEC61A1-202ENST00000424880 PABPN1Q86U42 306 aaKnown RBP eCLIP17.06■□□□□ 0.321e-6■■■■□ 25.9
SEC61A1-202ENST00000424880 BCL11AQ9H165 835 aa17.02■□□□□ 0.32
SEC61A1-202ENST00000424880 ZNF316A6NFI3 1004 aaPredicted RBP16.96■□□□□ 0.31
SEC61A1-202ENST00000424880 WIZO95785 1651 aa16.96■□□□□ 0.31
SEC61A1-202ENST00000424880 EIF4G1Q04637 1599 aaKnown RBP16.94■□□□□ 0.3
SEC61A1-202ENST00000424880 DNAJC5BQ9UF47 199 aa16.94■□□□□ 0.3
SEC61A1-202ENST00000424880 BAZ1AQ9NRL2 1556 aaPredicted RBP16.91■□□□□ 0.3
SEC61A1-202ENST00000424880 CC2D2AQ9P2K1 1620 aa16.9■□□□□ 0.3
SEC61A1-202ENST00000424880 SMARCA4P51532 1647 aa16.83■□□□□ 0.29
SEC61A1-202ENST00000424880 CSRNP3Q8WYN3 585 aa16.83■□□□□ 0.28
SEC61A1-202ENST00000424880 ANP32EQ9BTT0 268 aa16.81■□□□□ 0.28
SEC61A1-202ENST00000424880 SUPT16HQ9Y5B9 1047 aaKnown RBP16.8■□□□□ 0.28
SEC61A1-202ENST00000424880 TSHZ2Q9NRE2 1034 aa16.77■□□□□ 0.28
SEC61A1-202ENST00000424880 BCANQ96GW7 911 aa16.76■□□□□ 0.27
SEC61A1-202ENST00000424880 HNRNPUL2Q1KMD3 747 aaKnown RBP16.74■□□□□ 0.27
SEC61A1-202ENST00000424880 TOP2AP11388 1531 aaKnown RBP16.68■□□□□ 0.26
SEC61A1-202ENST00000424880 CCDC88BA6NC98 1476 aa16.63■□□□□ 0.25
SEC61A1-202ENST00000424880 SMARCA2P51531 1590 aa16.59■□□□□ 0.25
SEC61A1-202ENST00000424880 PEG3Q9GZU2 1588 aa16.58■□□□□ 0.25
SEC61A1-202ENST00000424880 HMGXB3Q12766 1538 aa16.55■□□□□ 0.24
SEC61A1-202ENST00000424880 CLSPNQ9HAW4 1339 aa16.55■□□□□ 0.24
SEC61A1-202ENST00000424880 KCNH8Q96L42 1107 aa16.54■□□□□ 0.24
SEC61A1-202ENST00000424880 ATAD2BQ9ULI0 1458 aa16.53■□□□□ 0.24
SEC61A1-202ENST00000424880 NCAPD3P42695 1498 aa16.52■□□□□ 0.24
SEC61A1-202ENST00000424880 PRKCSHP14314 528 aaPredicted RBP16.48■□□□□ 0.23
SEC61A1-202ENST00000424880 UBTFP17480 764 aaKnown RBP16.48■□□□□ 0.23
SEC61A1-202ENST00000424880 ITGAEP38570 1179 aa16.48■□□□□ 0.23
SEC61A1-202ENST00000424880 RANGAP1P46060 587 aaPredicted RBP16.47■□□□□ 0.23
SEC61A1-202ENST00000424880 FKBP8Q14318 412 aa16.43■□□□□ 0.22
SEC61A1-202ENST00000424880 BAZ1BQ9UIG0 1483 aaKnown RBP16.42■□□□□ 0.22
SEC61A1-202ENST00000424880 ABCC8Q09428 1581 aa16.42■□□□□ 0.22
SEC61A1-202ENST00000424880 CEP162Q5TB80 1403 aa16.39■□□□□ 0.21
SEC61A1-202ENST00000424880 RBM19Q9Y4C8 960 aaKnown RBP16.38■□□□□ 0.21
SEC61A1-202ENST00000424880 WRNQ14191 1432 aaPredicted RBP eCLIP16.35■□□□□ 0.216e-6■□□□□ 9
SEC61A1-202ENST00000424880 MSH5O43196 834 aa16.3■□□□□ 0.2
SEC61A1-202ENST00000424880 SOGA1O94964 1423 aa16.25■□□□□ 0.19
SEC61A1-202ENST00000424880 TRIM52Q96A61 297 aa16.24■□□□□ 0.19
SEC61A1-202ENST00000424880 ERICH6Q7L0X2 663 aa16.23■□□□□ 0.19
SEC61A1-202ENST00000424880 CUX2O14529 1486 aa16.21■□□□□ 0.19
SEC61A1-202ENST00000424880 LAMC3Q9Y6N6 1575 aa16.21■□□□□ 0.19
SEC61A1-202ENST00000424880 IRX6P78412 446 aaPredicted RBP16.18■□□□□ 0.18
SEC61A1-202ENST00000424880 RUSC2Q8N2Y8 1516 aa16.18■□□□□ 0.18
SEC61A1-202ENST00000424880 HIRIP3Q9BW71 556 aaPredicted RBP16.17■□□□□ 0.18
SEC61A1-202ENST00000424880 SYNJ1O43426 1573 aa16.14■□□□□ 0.17
SEC61A1-202ENST00000424880 DDX10Q13206 875 aaKnown RBP16.14■□□□□ 0.17
SEC61A1-202ENST00000424880 APLP2Q06481 763 aa16.13■□□□□ 0.17
SEC61A1-202ENST00000424880 NEFLP07196 543 aa16.13■□□□□ 0.17
SEC61A1-202ENST00000424880 ANO8Q9HCE9 1232 aaPredicted RBP16.12■□□□□ 0.17
SEC61A1-202ENST00000424880 TNIKQ9UKE5 1360 aa16.11■□□□□ 0.17
SEC61A1-202ENST00000424880 THOC2Q8NI27 1593 aaKnown RBP16.07■□□□□ 0.16
SEC61A1-202ENST00000424880 PRDM2Q13029 1718 aa16.07■□□□□ 0.16
SEC61A1-202ENST00000424880 CFTRP13569 1480 aa16.04■□□□□ 0.16
SEC61A1-202ENST00000424880 DHX57Q6P158 1386 aaKnown RBP16.03■□□□□ 0.16
SEC61A1-202ENST00000424880 NBR1Q14596 966 aa16.03■□□□□ 0.16
SEC61A1-202ENST00000424880 DEKP35659 375 aaKnown RBP16.03■□□□□ 0.16
SEC61A1-202ENST00000424880 CCDC136Q96JN2 1154 aa15.99■□□□□ 0.15
SEC61A1-202ENST00000424880 EEA1Q15075 1411 aa15.99■□□□□ 0.15
SEC61A1-202ENST00000424880 TOP2BQ02880 1626 aa15.98■□□□□ 0.15
SEC61A1-202ENST00000424880 KIF21AQ7Z4S6 1674 aa15.96■□□□□ 0.15
SEC61A1-202ENST00000424880 CADPSQ9ULU8 1353 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms