RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 NISCHQ9Y2I1 1504 aa24■■□□□ 1.43
USP3-216ENST00000559873 CCDC180Q9P1Z9 1646 aa21.29■■□□□ 1
USP3-216ENST00000559873 ABCC9O60706 1549 aa20.53■□□□□ 0.88
USP3-216ENST00000559873 ZCCHC6Q5VYS8 1495 aaKnown RBP20.06■□□□□ 0.8
USP3-216ENST00000559873 NACADO15069 1562 aa19.95■□□□□ 0.78
USP3-216ENST00000559873 MYO15BQ96JP2 1530 aa19.92■□□□□ 0.78
USP3-216ENST00000559873 RB1CC1Q8TDY2 1594 aa19.92■□□□□ 0.78
USP3-216ENST00000559873 DCAF1Q9Y4B6 1507 aa19.92■□□□□ 0.78
USP3-216ENST00000559873 DCAF8L2P0C7V8 631 aa19.9■□□□□ 0.78
USP3-216ENST00000559873 SCRIBQ14160 1630 aa19.4■□□□□ 0.7
USP3-216ENST00000559873 UNC13AQ9UPW8 1703 aa19.37■□□□□ 0.69
USP3-216ENST00000559873 BICRAQ9NZM4 1560 aa19.22■□□□□ 0.67
USP3-216ENST00000559873 SHROOM4Q9ULL8 1493 aa19.21■□□□□ 0.67
USP3-216ENST00000559873 PABPN1Q86U42 306 aaKnown RBP eCLIP19.17■□□□□ 0.66
USP3-216ENST00000559873 EIF4G1Q04637 1599 aaKnown RBP18.75■□□□□ 0.59
USP3-216ENST00000559873 BAZ1AQ9NRL2 1556 aaPredicted RBP18.63■□□□□ 0.57
USP3-216ENST00000559873 CECR2Q9BXF3 1484 aa18.6■□□□□ 0.57
USP3-216ENST00000559873 CC2D2AQ9P2K1 1620 aa18.6■□□□□ 0.57
USP3-216ENST00000559873 SMARCA4P51532 1647 aa18.58■□□□□ 0.56
USP3-216ENST00000559873 DNAJC5BQ9UF47 199 aa18.51■□□□□ 0.55
USP3-216ENST00000559873 SMARCA2P51531 1590 aa18.46■□□□□ 0.55
USP3-216ENST00000559873 MROH2BQ7Z745 1585 aa18.45■□□□□ 0.54
USP3-216ENST00000559873 PEG3Q9GZU2 1588 aa18.42■□□□□ 0.54
USP3-216ENST00000559873 ATAD2BQ9ULI0 1458 aa18.4■□□□□ 0.54
USP3-216ENST00000559873 NCAPD3P42695 1498 aa18.37■□□□□ 0.53
USP3-216ENST00000559873 HMGXB3Q12766 1538 aa18.35■□□□□ 0.53
USP3-216ENST00000559873 RSF1Q96T23 1441 aaPredicted RBP18.33■□□□□ 0.53
USP3-216ENST00000559873 BAZ1BQ9UIG0 1483 aaKnown RBP18.31■□□□□ 0.52
USP3-216ENST00000559873 WIZO95785 1651 aa18.27■□□□□ 0.52
USP3-216ENST00000559873 TOP2AP11388 1531 aaKnown RBP18.16■□□□□ 0.5
USP3-216ENST00000559873 SUPT5HO00267 1087 aaKnown RBP18.03■□□□□ 0.48
USP3-216ENST00000559873 LAMC3Q9Y6N6 1575 aa17.89■□□□□ 0.45
USP3-216ENST00000559873 CCDC88BA6NC98 1476 aa17.88■□□□□ 0.45
USP3-216ENST00000559873 CADPSQ9ULU8 1353 aa17.84■□□□□ 0.45
USP3-216ENST00000559873 NESP48681 1621 aa17.8■□□□□ 0.44
USP3-216ENST00000559873 CFTRP13569 1480 aa17.79■□□□□ 0.44
USP3-216ENST00000559873 PDS5BQ9NTI5 1447 aa17.77■□□□□ 0.44
USP3-216ENST00000559873 ERCC6Q03468 1493 aa17.75■□□□□ 0.43
USP3-216ENST00000559873 PRDM2Q13029 1718 aa17.71■□□□□ 0.43
USP3-216ENST00000559873 FANCD2Q9BXW9 1451 aa17.65■□□□□ 0.42
USP3-216ENST00000559873 CEP164Q9UPV0 1460 aa17.64■□□□□ 0.41
USP3-216ENST00000559873 KIF21AQ7Z4S6 1674 aa17.64■□□□□ 0.41
USP3-216ENST00000559873 MRC2Q9UBG0 1479 aa17.56■□□□□ 0.4
USP3-216ENST00000559873 THOC2Q8NI27 1593 aaKnown RBP17.55■□□□□ 0.4
USP3-216ENST00000559873 WDR62O43379 1518 aa17.49■□□□□ 0.39
USP3-216ENST00000559873 CUX2O14529 1486 aa17.49■□□□□ 0.39
USP3-216ENST00000559873 ABCC8Q09428 1581 aa17.46■□□□□ 0.39
USP3-216ENST00000559873 URB2Q14146 1524 aaKnown RBP17.42■□□□□ 0.38
USP3-216ENST00000559873 DNMBPQ6XZF7 1577 aa17.42■□□□□ 0.38
USP3-216ENST00000559873 TOPBP1Q92547 1522 aa17.39■□□□□ 0.37
USP3-216ENST00000559873 WRNQ14191 1432 aaPredicted RBP eCLIP17.34■□□□□ 0.37
USP3-216ENST00000559873 CUX1P39880 1505 aa17.31■□□□□ 0.36
USP3-216ENST00000559873 TOP2BQ02880 1626 aa17.27■□□□□ 0.36
USP3-216ENST00000559873 IFT140Q96RY7 1462 aa17.26■□□□□ 0.35
USP3-216ENST00000559873 BIVM-ERCC5R4GMW8 1640 aa17.26■□□□□ 0.35
USP3-216ENST00000559873 POLA1P09884 1462 aaPredicted RBP17.25■□□□□ 0.35
USP3-216ENST00000559873 FGD5Q6ZNL6 1462 aa17.25■□□□□ 0.35
USP3-216ENST00000559873 SYNJ1O43426 1573 aa17.24■□□□□ 0.35
USP3-216ENST00000559873 SOGA1O94964 1423 aa17.18■□□□□ 0.34
USP3-216ENST00000559873 TARBP1Q13395 1621 aaKnown RBP17.16■□□□□ 0.34
USP3-216ENST00000559873 WDR97A6NE52 1622 aa17.14■□□□□ 0.33
USP3-216ENST00000559873 RAD54L2Q9Y4B4 1467 aa17.14■□□□□ 0.33
USP3-216ENST00000559873 ABCA10Q8WWZ4 1543 aa17.11■□□□□ 0.33
USP3-216ENST00000559873 EIF4G3O43432 1585 aaKnown RBP17.09■□□□□ 0.33
USP3-216ENST00000559873 ZNF608Q9ULD9 1512 aaPredicted RBP17.08■□□□□ 0.32
USP3-216ENST00000559873 TRIM41Q8WV44 630 aa17.07■□□□□ 0.32
USP3-216ENST00000559873 TDRD9Q8NDG6 1382 aaKnown RBP17.02■□□□□ 0.32
USP3-216ENST00000559873 ABCA5Q8WWZ7 1642 aa17.02■□□□□ 0.31
USP3-216ENST00000559873 AQRO60306 1485 aaKnown RBP eCLIP17.01■□□□□ 0.311e-6■■■■□ 20.3
USP3-216ENST00000559873 GAPVD1Q14C86 1478 aa17■□□□□ 0.31
USP3-216ENST00000559873 GRIN2BQ13224 1484 aa16.99■□□□□ 0.31
USP3-216ENST00000559873 KIF27Q86VH2 1401 aa16.98■□□□□ 0.31
USP3-216ENST00000559873 PBRM1Q86U86 1689 aa16.96■□□□□ 0.31
USP3-216ENST00000559873 MAGI1Q96QZ7 1491 aaPredicted RBP16.94■□□□□ 0.3
USP3-216ENST00000559873 CHIC1Q5VXU3 224 aa16.94■□□□□ 0.3
USP3-216ENST00000559873 ERICH3Q5RHP9 1530 aa16.93■□□□□ 0.3
USP3-216ENST00000559873 SNAPC4Q5SXM2 1469 aa16.92■□□□□ 0.3
USP3-216ENST00000559873 SYNJ2O15056 1496 aa16.86■□□□□ 0.29
USP3-216ENST00000559873 ADAMTS12P58397 1594 aa16.86■□□□□ 0.29
USP3-216ENST00000559873 CUL7Q14999 1698 aa16.85■□□□□ 0.29
USP3-216ENST00000559873 EEA1Q15075 1411 aa16.84■□□□□ 0.29
USP3-216ENST00000559873 FHAD1B1AJZ9 1412 aa16.83■□□□□ 0.28
USP3-216ENST00000559873 CHD1O14646 1710 aa16.8■□□□□ 0.28
USP3-216ENST00000559873 FBLN2P98095 1184 aa16.8■□□□□ 0.28
USP3-216ENST00000559873 CHMP7Q8WUX9 453 aaPredicted RBP16.8■□□□□ 0.28
USP3-216ENST00000559873 IGF1RP08069 1367 aa16.79■□□□□ 0.28
USP3-216ENST00000559873 RUSC2Q8N2Y8 1516 aa16.76■□□□□ 0.27
USP3-216ENST00000559873 GRIN2AQ12879 1464 aa16.76■□□□□ 0.27
USP3-216ENST00000559873 OSCARQ8IYS5 282 aa16.74■□□□□ 0.27
USP3-216ENST00000559873 CARMIL1Q5VZK9 1371 aa16.73■□□□□ 0.27
USP3-216ENST00000559873 RAPGEF2Q9Y4G8 1499 aa16.69■□□□□ 0.26
USP3-216ENST00000559873 CSRNP3Q8WYN3 585 aa16.69■□□□□ 0.26
USP3-216ENST00000559873 NUP160Q12769 1436 aa16.67■□□□□ 0.26
USP3-216ENST00000559873 PRXQ9BXM0 1461 aa16.67■□□□□ 0.26
USP3-216ENST00000559873 CEP170Q5SW79 1584 aa16.64■□□□□ 0.25
USP3-216ENST00000559873 FAM9AQ8IZU1 332 aaPredicted RBP16.64■□□□□ 0.25
USP3-216ENST00000559873 CLASP1Q7Z460 1538 aa16.64■□□□□ 0.25
USP3-216ENST00000559873 KIF21BO75037 1637 aa16.61■□□□□ 0.25
USP3-216ENST00000559873 DNAJC5Q9H3Z4 198 aa16.58■□□□□ 0.24
USP3-216ENST00000559873 KIAA0586Q9BVV6 1533 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms