RNA–Protein interactions for RNA: ENST00000504430.5

NIPBL-204, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 2

Gene NIPBL, Length 3,455 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-204ENST00000504430 CHIC1Q5VXU3 224 aa13.72□□□□□ -0.21
NIPBL-204ENST00000504430 AEBP2Q6ZN18 517 aaPredicted RBP13.38□□□□□ -0.27
NIPBL-204ENST00000504430 PHF23Q9BUL5 403 aaPredicted RBP12.44□□□□□ -0.42
NIPBL-204ENST00000504430 EHMT2Q96KQ7 1210 aa12.18□□□□□ -0.46
NIPBL-204ENST00000504430 SLC24A1O60721 1099 aa11.73□□□□□ -0.53
NIPBL-204ENST00000504430 KCNA4P22459 653 aa11.53□□□□□ -0.56
NIPBL-204ENST00000504430 PLPPR3Q6T4P5 718 aa11.53□□□□□ -0.56
NIPBL-204ENST00000504430 CSRNP3Q8WYN3 585 aa11.36□□□□□ -0.59
NIPBL-204ENST00000504430 ADRA2BP18089 450 aa11.23□□□□□ -0.61
NIPBL-204ENST00000504430 RTN4Q9NQC3 1192 aaKnown RBP11.23□□□□□ -0.61
NIPBL-204ENST00000504430 SLC4A1APQ9BWU0 796 aaKnown RBP10.97□□□□□ -0.65
NIPBL-204ENST00000504430 SENP3Q9H4L4 574 aaPredicted RBP10.78□□□□□ -0.68
NIPBL-204ENST00000504430 PPP6R1Q9UPN7 881 aa10.78□□□□□ -0.68
NIPBL-204ENST00000504430 AMER1Q5JTC6 1135 aaPredicted RBP10.77□□□□□ -0.69
NIPBL-204ENST00000504430 ZBTB22O15209 634 aa10.72□□□□□ -0.69
NIPBL-204ENST00000504430 PRKCSHP14314 528 aaPredicted RBP10.56□□□□□ -0.72
NIPBL-204ENST00000504430 NCBP3Q53F19 620 aaKnown RBP10.41□□□□□ -0.74
NIPBL-204ENST00000504430 PPP4R3CPQ6ZMV5 832 aa10.41□□□□□ -0.74
NIPBL-204ENST00000504430 NPM3O75607 178 aaKnown RBP10.4□□□□□ -0.74
NIPBL-204ENST00000504430 DAXXQ9UER7 740 aaPredicted RBP10.28□□□□□ -0.76
NIPBL-204ENST00000504430 FKBP8Q14318 412 aa10.21□□□□□ -0.77
NIPBL-204ENST00000504430 FOXD1Q16676 465 aa10.18□□□□□ -0.78
NIPBL-204ENST00000504430 TAOK2Q9UL54 1235 aa10.1□□□□□ -0.79
NIPBL-204ENST00000504430 TIMELESSQ9UNS1 1208 aa10.05□□□□□ -0.8
NIPBL-204ENST00000504430 PLCB2Q00722 1185 aa10.04□□□□□ -0.8
NIPBL-204ENST00000504430 FOXD4L1Q9NU39 408 aa10.03□□□□□ -0.8
NIPBL-204ENST00000504430 HAP1P54257 671 aaPredicted RBP10.03□□□□□ -0.8
NIPBL-204ENST00000504430 TPRNQ4KMQ1 711 aa10.03□□□□□ -0.8
NIPBL-204ENST00000504430 BCANQ96GW7 911 aa9.95□□□□□ -0.82
NIPBL-204ENST00000504430 TULP1O00294 542 aaPredicted RBP9.92□□□□□ -0.82
NIPBL-204ENST00000504430 PIAS4Q8N2W9 510 aaPredicted RBP9.83□□□□□ -0.84
NIPBL-204ENST00000504430 DCAF8L2P0C7V8 631 aa9.82□□□□□ -0.84
NIPBL-204ENST00000504430 ARXQ96QS3 562 aa9.78□□□□□ -0.84
NIPBL-204ENST00000504430 FBLN2P98095 1184 aa9.76□□□□□ -0.85
NIPBL-204ENST00000504430 KDM2AQ9Y2K7 1162 aa9.76□□□□□ -0.85
NIPBL-204ENST00000504430 CNKSR2Q8WXI2 1034 aa9.73□□□□□ -0.85
NIPBL-204ENST00000504430 VSIG10Q8N0Z9 540 aa9.59□□□□□ -0.87
NIPBL-204ENST00000504430 GTF3C3Q9Y5Q9 886 aa9.59□□□□□ -0.87
NIPBL-204ENST00000504430 SLC4A2P04920 1241 aa9.58□□□□□ -0.88
NIPBL-204ENST00000504430 MAPK8IP2Q13387 824 aaPredicted RBP9.58□□□□□ -0.88
NIPBL-204ENST00000504430 HOMEZQ8IX15 550 aa9.52□□□□□ -0.89
NIPBL-204ENST00000504430 KLHL34Q8N239 644 aa9.51□□□□□ -0.89
NIPBL-204ENST00000504430 CFAP44Q96MT7 982 aa9.47□□□□□ -0.89
NIPBL-204ENST00000504430 PODXL2Q9NZ53 605 aa9.46□□□□□ -0.9
NIPBL-204ENST00000504430 PAXIP1Q6ZW49 1069 aaPredicted RBP9.46□□□□□ -0.9
NIPBL-204ENST00000504430 ATF5Q9Y2D1 282 aaPredicted RBP9.43□□□□□ -0.9
NIPBL-204ENST00000504430 APLP2Q06481 763 aa9.43□□□□□ -0.9
NIPBL-204ENST00000504430 PKD2Q13563 968 aa9.42□□□□□ -0.9
NIPBL-204ENST00000504430 TSHZ2Q9NRE2 1034 aa9.41□□□□□ -0.9
NIPBL-204ENST00000504430 NPM1P06748 294 aaKnown RBP eCLIP9.41□□□□□ -0.9
NIPBL-204ENST00000504430 TMEM132AQ24JP5 1023 aa9.37□□□□□ -0.91
NIPBL-204ENST00000504430 IFNLR1Q8IU57 520 aaPredicted RBP9.36□□□□□ -0.91
NIPBL-204ENST00000504430 RANGAP1P46060 587 aaPredicted RBP9.36□□□□□ -0.91
NIPBL-204ENST00000504430 SUPT5HO00267 1087 aaKnown RBP9.34□□□□□ -0.91
NIPBL-204ENST00000504430 C14orf37Q86TY3 774 aa9.34□□□□□ -0.91
NIPBL-204ENST00000504430 DNAJC5BQ9UF47 199 aa9.33□□□□□ -0.92
NIPBL-204ENST00000504430 SCAF1Q9H7N4 1312 aaKnown RBP9.32□□□□□ -0.92
NIPBL-204ENST00000504430 MYCNP04198 464 aaPredicted RBP9.32□□□□□ -0.92
NIPBL-204ENST00000504430 ATXN8OSP0DMR3 200 aa9.32□□□□□ -0.92
NIPBL-204ENST00000504430 VASPP50552 380 aaPredicted RBP9.28□□□□□ -0.92
NIPBL-204ENST00000504430 RNF216Q9NWF9 866 aaPredicted RBP9.27□□□□□ -0.93
NIPBL-204ENST00000504430 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.26□□□□□ -0.93
NIPBL-204ENST00000504430 NBR1Q14596 966 aa9.23□□□□□ -0.93
NIPBL-204ENST00000504430 BBXQ8WY36 941 aaPredicted RBP9.19□□□□□ -0.94
NIPBL-204ENST00000504430 TRIM26Q12899 539 aaPredicted RBP9.17□□□□□ -0.94
NIPBL-204ENST00000504430 FBXO3Q9UK99 471 aa9.17□□□□□ -0.94
NIPBL-204ENST00000504430 NPM2Q86SE8 214 aaKnown RBP9.16□□□□□ -0.94
NIPBL-204ENST00000504430 UBTFP17480 764 aaKnown RBP9.15□□□□□ -0.94
NIPBL-204ENST00000504430 RGL2O15211 777 aa9.12□□□□□ -0.95
NIPBL-204ENST00000504430 SPRYD3Q8NCJ5 442 aa9.12□□□□□ -0.95
NIPBL-204ENST00000504430 ECM2O94769 699 aaPredicted RBP9.1□□□□□ -0.95
NIPBL-204ENST00000504430 SPDYE4A6NLX3 237 aa9.1□□□□□ -0.95
NIPBL-204ENST00000504430 ERICH6Q7L0X2 663 aa9.09□□□□□ -0.95
NIPBL-204ENST00000504430 PELP1Q8IZL8 1130 aaKnown RBP9.09□□□□□ -0.95
NIPBL-204ENST00000504430 TRHP20396 242 aaPredicted RBP9.08□□□□□ -0.96
NIPBL-204ENST00000504430 HRCP23327 699 aa9.07□□□□□ -0.96
NIPBL-204ENST00000504430 CHGAP10645 457 aaKnown RBP9.02□□□□□ -0.97
NIPBL-204ENST00000504430 HOXD11P31277 338 aaPredicted RBP8.98□□□□□ -0.97
NIPBL-204ENST00000504430 TTBK1Q5TCY1 1321 aaPredicted RBP8.96□□□□□ -0.97
NIPBL-204ENST00000504430 LOC105371045A0A1W2PR82 267 aa8.96□□□□□ -0.98
NIPBL-204ENST00000504430 MKRN4PQ13434 485 aaPredicted RBP8.95□□□□□ -0.98
NIPBL-204ENST00000504430 DNAJC5Q9H3Z4 198 aa8.93□□□□□ -0.98
NIPBL-204ENST00000504430 PROM2Q8N271 834 aa8.91□□□□□ -0.98
NIPBL-204ENST00000504430 EIF5BO60841 1220 aaKnown RBP8.9□□□□□ -0.98
NIPBL-204ENST00000504430 ARID3AQ99856 593 aa8.9□□□□□ -0.98
NIPBL-204ENST00000504430 BRPF1P55201 1214 aaPredicted RBP8.89□□□□□ -0.99
NIPBL-204ENST00000504430 MSH5O43196 834 aa8.87□□□□□ -0.99
NIPBL-204ENST00000504430 ZNF219Q9P2Y4 722 aaPredicted RBP8.84□□□□□ -0.99
NIPBL-204ENST00000504430 PLEKHG5O94827 1062 aa8.83□□□□□ -1
NIPBL-204ENST00000504430 SPOCK2Q92563 424 aa8.83□□□□□ -1
NIPBL-204ENST00000504430 DMRT2Q9Y5R5 561 aa8.8□□□□□ -1
NIPBL-204ENST00000504430 MYT1Q01538 1121 aa8.8□□□□□ -1
NIPBL-204ENST00000504430 NKX1-1Q15270 411 aaPredicted RBP8.79□□□□□ -1
NIPBL-204ENST00000504430 NEUROD2Q15784 382 aa8.77□□□□□ -1.01
NIPBL-204ENST00000504430 U3KPZ7 1027 aaPredicted RBP8.75□□□□□ -1.01
NIPBL-204ENST00000504430 CIZ1Q9ULV3 898 aaPredicted RBP8.75□□□□□ -1.01
NIPBL-204ENST00000504430 LMOD2Q6P5Q4 547 aa8.73□□□□□ -1.01
NIPBL-204ENST00000504430 TRIM41Q8WV44 630 aa8.73□□□□□ -1.01
NIPBL-204ENST00000504430 DCAF8L1A6NGE4 600 aa8.73□□□□□ -1.01
NIPBL-204ENST00000504430 C1orf115Q9H7X2 142 aa8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms