RNA–Protein interactions for RNA: ENST00000338508.8

SHANK2-201, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 5 BASIC

Gene SHANK2, Length 7,271 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-201ENST00000338508 DCAF8L2P0C7V8 631 aa20.51■□□□□ 0.87
SHANK2-201ENST00000338508 EHMT2Q96KQ7 1210 aa19.34■□□□□ 0.69
SHANK2-201ENST00000338508 SUPT5HO00267 1087 aaKnown RBP19.11■□□□□ 0.65
SHANK2-201ENST00000338508 PELP1Q8IZL8 1130 aaKnown RBP18.88■□□□□ 0.61
SHANK2-201ENST00000338508 TTBK1Q5TCY1 1321 aaPredicted RBP18.64■□□□□ 0.57
SHANK2-201ENST00000338508 SHROOM4Q9ULL8 1493 aa18.62■□□□□ 0.57
SHANK2-201ENST00000338508 APLP2Q06481 763 aa18.53■□□□□ 0.56
SHANK2-201ENST00000338508 ERICH6Q7L0X2 663 aa18.47■□□□□ 0.55
SHANK2-201ENST00000338508 RANGAP1P46060 587 aaPredicted RBP18.36■□□□□ 0.53
SHANK2-201ENST00000338508 FAM9AQ8IZU1 332 aaPredicted RBP18.29■□□□□ 0.52
SHANK2-201ENST00000338508 ATP1B4Q9UN42 357 aaPredicted RBP18.23■□□□□ 0.51
SHANK2-201ENST00000338508 PCGF6Q9BYE7 350 aa18.15■□□□□ 0.5
SHANK2-201ENST00000338508 CCER1Q8TC90 406 aaPredicted RBP18.08■□□□□ 0.49
SHANK2-201ENST00000338508 MYT1Q01538 1121 aa18.01■□□□□ 0.47
SHANK2-201ENST00000338508 YTHDC1Q96MU7 727 aaKnown RBP17.88■□□□□ 0.45
SHANK2-201ENST00000338508 CENPBP07199 599 aaPredicted RBP17.84■□□□□ 0.45
SHANK2-201ENST00000338508 NISCHQ9Y2I1 1504 aa17.82■□□□□ 0.44
SHANK2-201ENST00000338508 NEFLP07196 543 aa17.77■□□□□ 0.43
SHANK2-201ENST00000338508 MYT1LQ9UL68 1186 aa17.71■□□□□ 0.43
SHANK2-201ENST00000338508 CHIC1Q5VXU3 224 aa17.69■□□□□ 0.42
SHANK2-201ENST00000338508 POLR3GLQ9BT43 218 aa17.67■□□□□ 0.42
SHANK2-201ENST00000338508 CNGB1Q14028 1251 aaPredicted RBP17.65■□□□□ 0.42
SHANK2-201ENST00000338508 DAXXQ9UER7 740 aaPredicted RBP17.59■□□□□ 0.41
SHANK2-201ENST00000338508 UBTFP17480 764 aaKnown RBP17.59■□□□□ 0.41
SHANK2-201ENST00000338508 PPARGC1BQ86YN6 1023 aaKnown RBP17.57■□□□□ 0.4
SHANK2-201ENST00000338508 SLC4A1APQ9BWU0 796 aaKnown RBP17.47■□□□□ 0.39
SHANK2-201ENST00000338508 TRIM41Q8WV44 630 aa17.46■□□□□ 0.39
SHANK2-201ENST00000338508 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.4■□□□□ 0.38
SHANK2-201ENST00000338508 HNRNPUL2Q1KMD3 747 aaKnown RBP17.4■□□□□ 0.38
SHANK2-201ENST00000338508 ITGAEP38570 1179 aa17.4■□□□□ 0.38
SHANK2-201ENST00000338508 ZEB1P37275 1124 aaPredicted RBP17.37■□□□□ 0.37
SHANK2-201ENST00000338508 CLSPNQ9HAW4 1339 aa17.19■□□□□ 0.34
SHANK2-201ENST00000338508 ZNF316A6NFI3 1004 aaPredicted RBP17.14■□□□□ 0.33
SHANK2-201ENST00000338508 BCL11AQ9H165 835 aa17.12■□□□□ 0.33
SHANK2-201ENST00000338508 SLC24A1O60721 1099 aa17.05■□□□□ 0.32
SHANK2-201ENST00000338508 RTL5Q5HYW3 569 aaPredicted RBP16.96■□□□□ 0.31
SHANK2-201ENST00000338508 ZBTB47Q9UFB7 747 aaPredicted RBP16.78■□□□□ 0.28
SHANK2-201ENST00000338508 BCANQ96GW7 911 aa16.76■□□□□ 0.27
SHANK2-201ENST00000338508 TRIM26Q12899 539 aaPredicted RBP16.74■□□□□ 0.27
SHANK2-201ENST00000338508 HRCP23327 699 aa16.73■□□□□ 0.27
SHANK2-201ENST00000338508 TRIM52Q96A61 297 aa16.72■□□□□ 0.27
SHANK2-201ENST00000338508 ZNF326Q5BKZ1 582 aaKnown RBP16.71■□□□□ 0.27
SHANK2-201ENST00000338508 FAM50AQ14320 339 aaKnown RBP16.71■□□□□ 0.27
SHANK2-201ENST00000338508 NEUROD1Q13562 356 aa16.68■□□□□ 0.26
SHANK2-201ENST00000338508 LOC105371045A0A1W2PR82 267 aa16.64■□□□□ 0.25
SHANK2-201ENST00000338508 CANXP27824 592 aaKnown RBP16.62■□□□□ 0.25
SHANK2-201ENST00000338508 PLPPR3Q6T4P5 718 aa16.61■□□□□ 0.25
SHANK2-201ENST00000338508 DIEXFQ68CQ4 756 aaKnown RBP16.51■□□□□ 0.23
SHANK2-201ENST00000338508 FBLN2P98095 1184 aa16.49■□□□□ 0.23
SHANK2-201ENST00000338508 NEFMP07197 916 aa16.44■□□□□ 0.22
SHANK2-201ENST00000338508 NPM2Q86SE8 214 aaKnown RBP16.44■□□□□ 0.22
SHANK2-201ENST00000338508 CDK11AQ9UQ88 783 aaPredicted RBP16.43■□□□□ 0.22
SHANK2-201ENST00000338508 ARID3CA6NKF2 412 aa16.4■□□□□ 0.22
SHANK2-201ENST00000338508 ANP32CO43423 234 aa16.37■□□□□ 0.21
SHANK2-201ENST00000338508 EIF5BO60841 1220 aaKnown RBP16.34■□□□□ 0.21
SHANK2-201ENST00000338508 A0A0G2JS52 829 aa16.31■□□□□ 0.2
SHANK2-201ENST00000338508 HSP90AA1P07900 732 aaKnown RBP16.29■□□□□ 0.2
SHANK2-201ENST00000338508 GTF3C3Q9Y5Q9 886 aa16.27■□□□□ 0.19
SHANK2-201ENST00000338508 ARXQ96QS3 562 aa16.26■□□□□ 0.19
SHANK2-201ENST00000338508 SCAF1Q9H7N4 1312 aaKnown RBP16.25■□□□□ 0.19
SHANK2-201ENST00000338508 PABPN1Q86U42 306 aaKnown RBP eCLIP16.25■□□□□ 0.19
SHANK2-201ENST00000338508 PLEKHG5O94827 1062 aa16.24■□□□□ 0.19
SHANK2-201ENST00000338508 CHGAP10645 457 aaKnown RBP16.22■□□□□ 0.19
SHANK2-201ENST00000338508 ANP32BQ92688 251 aaKnown RBP16.21■□□□□ 0.19
SHANK2-201ENST00000338508 ESF1Q9H501 851 aaKnown RBP16.21■□□□□ 0.18
SHANK2-201ENST00000338508 ANP32AP39687 249 aaKnown RBP16.2■□□□□ 0.18
SHANK2-201ENST00000338508 ZNF777Q9ULD5 760 aaPredicted RBP16.2■□□□□ 0.18
SHANK2-201ENST00000338508 STAG3Q9UJ98 1225 aa16.19■□□□□ 0.18
SHANK2-201ENST00000338508 SALL2Q9Y467 1007 aaPredicted RBP16.18■□□□□ 0.18
SHANK2-201ENST00000338508 P3H3Q8IVL6 736 aa16.18■□□□□ 0.18
SHANK2-201ENST00000338508 SENP3Q9H4L4 574 aaPredicted RBP16.14■□□□□ 0.17
SHANK2-201ENST00000338508 TULP1O00294 542 aaPredicted RBP16.13■□□□□ 0.17
SHANK2-201ENST00000338508 ZBTB7CA1YPR0 619 aa16.08■□□□□ 0.16
SHANK2-201ENST00000338508 CDK11BP21127 795 aaKnown RBP16.07■□□□□ 0.16
SHANK2-201ENST00000338508 ABCC9O60706 1549 aa16.06■□□□□ 0.16
SHANK2-201ENST00000338508 NBR1Q14596 966 aa16.01■□□□□ 0.15
SHANK2-201ENST00000338508 UPF2Q9HAU5 1272 aaKnown RBP16■□□□□ 0.15
SHANK2-201ENST00000338508 FAM9BQ8IZU0 186 aa15.96■□□□□ 0.15
SHANK2-201ENST00000338508 TPRNQ4KMQ1 711 aa15.94■□□□□ 0.14
SHANK2-201ENST00000338508 FKBP8Q14318 412 aa15.94■□□□□ 0.14
SHANK2-201ENST00000338508 C14orf37Q86TY3 774 aa15.92■□□□□ 0.14
SHANK2-201ENST00000338508 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.91■□□□□ 0.14
SHANK2-201ENST00000338508 NCBP3Q53F19 620 aaKnown RBP15.91■□□□□ 0.14
SHANK2-201ENST00000338508 TAOK2Q9UL54 1235 aa15.89■□□□□ 0.13
SHANK2-201ENST00000338508 HNRNPUQ00839 825 aaKnown RBP eCLIP15.86■□□□□ 0.13
SHANK2-201ENST00000338508 GLIPR1L2Q4G1C9 344 aa15.83■□□□□ 0.12
SHANK2-201ENST00000338508 KDM2AQ9Y2K7 1162 aa15.79■□□□□ 0.12
SHANK2-201ENST00000338508 IRX6P78412 446 aaPredicted RBP15.77■□□□□ 0.12
SHANK2-201ENST00000338508 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.77■□□□□ 0.12
SHANK2-201ENST00000338508 NPM1P06748 294 aaKnown RBP eCLIP15.77■□□□□ 0.12
SHANK2-201ENST00000338508 WDR43Q15061 677 aaKnown RBP eCLIP15.76■□□□□ 0.11
SHANK2-201ENST00000338508 HAP1P54257 671 aaPredicted RBP15.76■□□□□ 0.11
SHANK2-201ENST00000338508 CCDC136Q96JN2 1154 aa15.76■□□□□ 0.11
SHANK2-201ENST00000338508 TMC1Q8TDI8 760 aa15.75■□□□□ 0.11
SHANK2-201ENST00000338508 DDX10Q13206 875 aaKnown RBP15.75■□□□□ 0.11
SHANK2-201ENST00000338508 SENP3-EIF4A1A0A087X0R7 540 aa15.75■□□□□ 0.11
SHANK2-201ENST00000338508 MYH16Q9H6N6 1097 aa15.74■□□□□ 0.11
SHANK2-201ENST00000338508 CHIC2Q9UKJ5 165 aa15.72■□□□□ 0.11
SHANK2-201ENST00000338508 NCLP19338 710 aaKnown RBP15.71■□□□□ 0.11
SHANK2-201ENST00000338508 TONSLQ96HA7 1378 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms