RNA–Protein interactions for RNA: ENST00000243253.7

SEC61A1-201, Transcript of Sec61 translocon alpha 1 subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SEC61A1, Length 3,635 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC61A1-201ENST00000243253 NISCHQ9Y2I1 1504 aa24.83■■□□□ 1.57
SEC61A1-201ENST00000243253 CCDC180Q9P1Z9 1646 aa21.16■□□□□ 0.98
SEC61A1-201ENST00000243253 ZCCHC6Q5VYS8 1495 aaKnown RBP21.11■□□□□ 0.97
SEC61A1-201ENST00000243253 SHROOM4Q9ULL8 1493 aa21.05■□□□□ 0.96
SEC61A1-201ENST00000243253 DCAF8L2P0C7V8 631 aa20.93■□□□□ 0.94
SEC61A1-201ENST00000243253 SUPT5HO00267 1087 aaKnown RBP20.74■□□□□ 0.91
SEC61A1-201ENST00000243253 MYO15BQ96JP2 1530 aa20.54■□□□□ 0.88
SEC61A1-201ENST00000243253 DCAF1Q9Y4B6 1507 aa20.51■□□□□ 0.87
SEC61A1-201ENST00000243253 CHIC1Q5VXU3 224 aa20.32■□□□□ 0.84
SEC61A1-201ENST00000243253 HRCP23327 699 aa20.03■□□□□ 0.8
SEC61A1-201ENST00000243253 ABCC9O60706 1549 aa20■□□□□ 0.79
SEC61A1-201ENST00000243253 EHMT2Q96KQ7 1210 aa19.83■□□□□ 0.77
SEC61A1-201ENST00000243253 PCGF6Q9BYE7 350 aa19.71■□□□□ 0.75
SEC61A1-201ENST00000243253 RSF1Q96T23 1441 aaPredicted RBP19.68■□□□□ 0.74
SEC61A1-201ENST00000243253 SCRIBQ14160 1630 aa19.64■□□□□ 0.73
SEC61A1-201ENST00000243253 LOC105371045A0A1W2PR82 267 aa19.64■□□□□ 0.73
SEC61A1-201ENST00000243253 RB1CC1Q8TDY2 1594 aa19.58■□□□□ 0.72
SEC61A1-201ENST00000243253 PPARGC1BQ86YN6 1023 aaKnown RBP19.53■□□□□ 0.72
SEC61A1-201ENST00000243253 FAM9AQ8IZU1 332 aaPredicted RBP19.43■□□□□ 0.7
SEC61A1-201ENST00000243253 TRIM26Q12899 539 aaPredicted RBP19.38■□□□□ 0.69
SEC61A1-201ENST00000243253 NACADO15069 1562 aa19.36■□□□□ 0.69
SEC61A1-201ENST00000243253 EIF4G1Q04637 1599 aaKnown RBP19.35■□□□□ 0.69
SEC61A1-201ENST00000243253 CECR2Q9BXF3 1484 aa19.31■□□□□ 0.68
SEC61A1-201ENST00000243253 MROH2BQ7Z745 1585 aa19.31■□□□□ 0.68
SEC61A1-201ENST00000243253 WIZO95785 1651 aa19.26■□□□□ 0.67
SEC61A1-201ENST00000243253 BAZ1AQ9NRL2 1556 aaPredicted RBP19.19■□□□□ 0.66
SEC61A1-201ENST00000243253 TRIM41Q8WV44 630 aa19.14■□□□□ 0.65
SEC61A1-201ENST00000243253 TTBK1Q5TCY1 1321 aaPredicted RBP19.08■□□□□ 0.64
SEC61A1-201ENST00000243253 UNC13AQ9UPW8 1703 aa19.01■□□□□ 0.63
SEC61A1-201ENST00000243253 ZEB1P37275 1124 aaPredicted RBP18.95■□□□□ 0.62
SEC61A1-201ENST00000243253 TOP2AP11388 1531 aaKnown RBP18.93■□□□□ 0.62
SEC61A1-201ENST00000243253 SMARCA4P51532 1647 aa18.91■□□□□ 0.62
SEC61A1-201ENST00000243253 SMARCA2P51531 1590 aa18.88■□□□□ 0.61
SEC61A1-201ENST00000243253 ABCC8Q09428 1581 aa18.81■□□□□ 0.6
SEC61A1-201ENST00000243253 CCDC88BA6NC98 1476 aa18.8■□□□□ 0.6
SEC61A1-201ENST00000243253 WRNQ14191 1432 aaPredicted RBP eCLIP18.79■□□□□ 0.66e-6■□□□□ 9
SEC61A1-201ENST00000243253 PEG3Q9GZU2 1588 aa18.67■□□□□ 0.58
SEC61A1-201ENST00000243253 BICRAQ9NZM4 1560 aa18.64■□□□□ 0.58
SEC61A1-201ENST00000243253 SOGA1O94964 1423 aa18.62■□□□□ 0.57
SEC61A1-201ENST00000243253 RANGAP1P46060 587 aaPredicted RBP18.62■□□□□ 0.57
SEC61A1-201ENST00000243253 SCAF1Q9H7N4 1312 aaKnown RBP18.62■□□□□ 0.57
SEC61A1-201ENST00000243253 CEP162Q5TB80 1403 aa18.59■□□□□ 0.57
SEC61A1-201ENST00000243253 RUSC2Q8N2Y8 1516 aa18.59■□□□□ 0.57
SEC61A1-201ENST00000243253 TNIKQ9UKE5 1360 aa18.57■□□□□ 0.56
SEC61A1-201ENST00000243253 EEA1Q15075 1411 aa18.53■□□□□ 0.56
SEC61A1-201ENST00000243253 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.49■□□□□ 0.55
SEC61A1-201ENST00000243253 SYNJ1O43426 1573 aa18.47■□□□□ 0.55
SEC61A1-201ENST00000243253 KIF21BO75037 1637 aa18.47■□□□□ 0.55
SEC61A1-201ENST00000243253 PABPN1Q86U42 306 aaKnown RBP eCLIP18.46■□□□□ 0.551e-6■■■■□ 25.9
SEC61A1-201ENST00000243253 GOLGA3Q08378 1498 aa18.4■□□□□ 0.54
SEC61A1-201ENST00000243253 CSRNP3Q8WYN3 585 aa18.36■□□□□ 0.53
SEC61A1-201ENST00000243253 CCER1Q8TC90 406 aaPredicted RBP18.33■□□□□ 0.53
SEC61A1-201ENST00000243253 CEP164Q9UPV0 1460 aa18.28■□□□□ 0.52
SEC61A1-201ENST00000243253 ACIN1Q9UKV3 1341 aaKnown RBP18.28■□□□□ 0.52
SEC61A1-201ENST00000243253 ATAD2BQ9ULI0 1458 aa18.28■□□□□ 0.52
SEC61A1-201ENST00000243253 NEUROD1Q13562 356 aa18.27■□□□□ 0.52
SEC61A1-201ENST00000243253 UBTFP17480 764 aaKnown RBP18.26■□□□□ 0.51
SEC61A1-201ENST00000243253 PELP1Q8IZL8 1130 aaKnown RBP18.26■□□□□ 0.51
SEC61A1-201ENST00000243253 BAZ1BQ9UIG0 1483 aaKnown RBP18.26■□□□□ 0.51
SEC61A1-201ENST00000243253 BIVM-ERCC5R4GMW8 1640 aa18.25■□□□□ 0.51
SEC61A1-201ENST00000243253 TOP2BQ02880 1626 aa18.24■□□□□ 0.51
SEC61A1-201ENST00000243253 DIEXFQ68CQ4 756 aaKnown RBP18.21■□□□□ 0.51
SEC61A1-201ENST00000243253 CLIP1P30622 1438 aa18.18■□□□□ 0.5
SEC61A1-201ENST00000243253 RAPGEF2Q9Y4G8 1499 aa18.18■□□□□ 0.5
SEC61A1-201ENST00000243253 VPS8Q8N3P4 1428 aa18.18■□□□□ 0.5
SEC61A1-201ENST00000243253 ERICH3Q5RHP9 1530 aa18.09■□□□□ 0.49
SEC61A1-201ENST00000243253 PRXQ9BXM0 1461 aa18.07■□□□□ 0.48
SEC61A1-201ENST00000243253 ZNF316A6NFI3 1004 aaPredicted RBP18.06■□□□□ 0.48
SEC61A1-201ENST00000243253 ARAP1Q96P48 1450 aa18.03■□□□□ 0.48
SEC61A1-201ENST00000243253 HNRNPUL2Q1KMD3 747 aaKnown RBP18.02■□□□□ 0.48
SEC61A1-201ENST00000243253 GTF3C3Q9Y5Q9 886 aa18■□□□□ 0.47
SEC61A1-201ENST00000243253 HMGXB3Q12766 1538 aa17.99■□□□□ 0.47
SEC61A1-201ENST00000243253 YTHDC1Q96MU7 727 aaKnown RBP17.98■□□□□ 0.47
SEC61A1-201ENST00000243253 CUX1P39880 1505 aa17.97■□□□□ 0.47
SEC61A1-201ENST00000243253 PRDM2Q13029 1718 aa17.95■□□□□ 0.46
SEC61A1-201ENST00000243253 CUX2O14529 1486 aa17.93■□□□□ 0.46
SEC61A1-201ENST00000243253 CENPBP07199 599 aaPredicted RBP17.91■□□□□ 0.46
SEC61A1-201ENST00000243253 NCAPD3P42695 1498 aa17.9■□□□□ 0.46
SEC61A1-201ENST00000243253 RRBP1Q9P2E9 1410 aaKnown RBP17.89■□□□□ 0.45
SEC61A1-201ENST00000243253 DHX57Q6P158 1386 aaKnown RBP17.88■□□□□ 0.45
SEC61A1-201ENST00000243253 MIER1Q8N108 512 aa17.87■□□□□ 0.45
SEC61A1-201ENST00000243253 CFTRP13569 1480 aa17.83■□□□□ 0.45
SEC61A1-201ENST00000243253 CLSPNQ9HAW4 1339 aa17.83■□□□□ 0.45
SEC61A1-201ENST00000243253 ITGAEP38570 1179 aa17.82■□□□□ 0.44
SEC61A1-201ENST00000243253 APLP2Q06481 763 aa17.8■□□□□ 0.44
SEC61A1-201ENST00000243253 ARHGAP35Q9NRY4 1499 aa17.8■□□□□ 0.44
SEC61A1-201ENST00000243253 KANK4Q5T7N3 995 aaPredicted RBP17.79■□□□□ 0.44
SEC61A1-201ENST00000243253 ATP1B4Q9UN42 357 aaPredicted RBP17.74■□□□□ 0.43
SEC61A1-201ENST00000243253 MAP3K1Q13233 1512 aa17.72■□□□□ 0.43
SEC61A1-201ENST00000243253 KIF27Q86VH2 1401 aa17.72■□□□□ 0.43
SEC61A1-201ENST00000243253 MAPKBP1O60336 1514 aa17.7■□□□□ 0.42
SEC61A1-201ENST00000243253 TIAM1Q13009 1591 aa17.67■□□□□ 0.42
SEC61A1-201ENST00000243253 CFAP43Q8NDM7 1665 aa17.65■□□□□ 0.42
SEC61A1-201ENST00000243253 CCNB3Q8WWL7 1395 aa17.62■□□□□ 0.41
SEC61A1-201ENST00000243253 IGF1RP08069 1367 aa17.61■□□□□ 0.41
SEC61A1-201ENST00000243253 LRRC9Q6ZRR7 1453 aa17.54■□□□□ 0.4
SEC61A1-201ENST00000243253 PCF11O94913 1555 aaKnown RBP17.52■□□□□ 0.4
SEC61A1-201ENST00000243253 FGD5Q6ZNL6 1462 aa17.51■□□□□ 0.39
SEC61A1-201ENST00000243253 RAB3GAP2Q9H2M9 1393 aa17.5■□□□□ 0.39
SEC61A1-201ENST00000243253 P3H3Q8IVL6 736 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms