RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 NISCHQ9Y2I1 1504 aa23.39■■□□□ 1.34
USP3-206ENST00000558157 CCDC180Q9P1Z9 1646 aa20.51■□□□□ 0.87
USP3-206ENST00000558157 ZCCHC6Q5VYS8 1495 aaKnown RBP19.64■□□□□ 0.73
USP3-206ENST00000558157 ABCC9O60706 1549 aa19.51■□□□□ 0.71
USP3-206ENST00000558157 DCAF1Q9Y4B6 1507 aa19.33■□□□□ 0.69
USP3-206ENST00000558157 DCAF8L2P0C7V8 631 aa19.31■□□□□ 0.68
USP3-206ENST00000558157 MYO15BQ96JP2 1530 aa19.15■□□□□ 0.66
USP3-206ENST00000558157 NACADO15069 1562 aa19.1■□□□□ 0.65
USP3-206ENST00000558157 RB1CC1Q8TDY2 1594 aa18.99■□□□□ 0.63
USP3-206ENST00000558157 SHROOM4Q9ULL8 1493 aa18.97■□□□□ 0.63
USP3-206ENST00000558157 SCRIBQ14160 1630 aa18.85■□□□□ 0.61
USP3-206ENST00000558157 UNC13AQ9UPW8 1703 aa18.66■□□□□ 0.58
USP3-206ENST00000558157 BICRAQ9NZM4 1560 aa18.44■□□□□ 0.54
USP3-206ENST00000558157 PABPN1Q86U42 306 aaKnown RBP eCLIP18.33■□□□□ 0.53
USP3-206ENST00000558157 HRCP23327 699 aa18.29■□□□□ 0.52
USP3-206ENST00000558157 PELP1Q8IZL8 1130 aaKnown RBP18.24■□□□□ 0.51
USP3-206ENST00000558157 CECR2Q9BXF3 1484 aa18.19■□□□□ 0.5
USP3-206ENST00000558157 SUPT5HO00267 1087 aaKnown RBP18.13■□□□□ 0.49
USP3-206ENST00000558157 MROH2BQ7Z745 1585 aa18.08■□□□□ 0.48
USP3-206ENST00000558157 BAZ1AQ9NRL2 1556 aaPredicted RBP18.08■□□□□ 0.48
USP3-206ENST00000558157 RSF1Q96T23 1441 aaPredicted RBP18.07■□□□□ 0.48
USP3-206ENST00000558157 SMARCA4P51532 1647 aa18.04■□□□□ 0.48
USP3-206ENST00000558157 WIZO95785 1651 aa17.95■□□□□ 0.46
USP3-206ENST00000558157 EIF4G1Q04637 1599 aaKnown RBP17.89■□□□□ 0.45
USP3-206ENST00000558157 PEG3Q9GZU2 1588 aa17.81■□□□□ 0.44
USP3-206ENST00000558157 ATAD2BQ9ULI0 1458 aa17.76■□□□□ 0.43
USP3-206ENST00000558157 SMARCA2P51531 1590 aa17.75■□□□□ 0.43
USP3-206ENST00000558157 TOP2AP11388 1531 aaKnown RBP17.75■□□□□ 0.43
USP3-206ENST00000558157 MYT1Q01538 1121 aa17.71■□□□□ 0.43
USP3-206ENST00000558157 CC2D2AQ9P2K1 1620 aa17.67■□□□□ 0.42
USP3-206ENST00000558157 BAZ1BQ9UIG0 1483 aaKnown RBP17.66■□□□□ 0.42
USP3-206ENST00000558157 HMGXB3Q12766 1538 aa17.61■□□□□ 0.41
USP3-206ENST00000558157 PCGF6Q9BYE7 350 aa17.61■□□□□ 0.41
USP3-206ENST00000558157 NCAPD3P42695 1498 aa17.61■□□□□ 0.41
USP3-206ENST00000558157 PPARGC1BQ86YN6 1023 aaKnown RBP17.57■□□□□ 0.4
USP3-206ENST00000558157 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
USP3-206ENST00000558157 CHIC1Q5VXU3 224 aa17.39■□□□□ 0.37
USP3-206ENST00000558157 ZEB1P37275 1124 aaPredicted RBP17.32■□□□□ 0.36
USP3-206ENST00000558157 DNAJC5BQ9UF47 199 aa17.31■□□□□ 0.36
USP3-206ENST00000558157 SCAF1Q9H7N4 1312 aaKnown RBP17.28■□□□□ 0.36
USP3-206ENST00000558157 TRIM26Q12899 539 aaPredicted RBP17.22■□□□□ 0.35
USP3-206ENST00000558157 CFTRP13569 1480 aa17.19■□□□□ 0.34
USP3-206ENST00000558157 PRDM2Q13029 1718 aa17.17■□□□□ 0.34
USP3-206ENST00000558157 ABCC8Q09428 1581 aa17.15■□□□□ 0.34
USP3-206ENST00000558157 CADPSQ9ULU8 1353 aa17.14■□□□□ 0.33
USP3-206ENST00000558157 NESP48681 1621 aa17.09■□□□□ 0.33
USP3-206ENST00000558157 LAMC3Q9Y6N6 1575 aa17.07■□□□□ 0.32
USP3-206ENST00000558157 TRIM41Q8WV44 630 aa17.05■□□□□ 0.32
USP3-206ENST00000558157 WRNQ14191 1432 aaPredicted RBP eCLIP17.02■□□□□ 0.32
USP3-206ENST00000558157 SYNJ1O43426 1573 aa17■□□□□ 0.31
USP3-206ENST00000558157 FANCD2Q9BXW9 1451 aa16.98■□□□□ 0.31
USP3-206ENST00000558157 BIVM-ERCC5R4GMW8 1640 aa16.93■□□□□ 0.3
USP3-206ENST00000558157 TOP2BQ02880 1626 aa16.93■□□□□ 0.3
USP3-206ENST00000558157 CUX1P39880 1505 aa16.92■□□□□ 0.3
USP3-206ENST00000558157 KIF21AQ7Z4S6 1674 aa16.92■□□□□ 0.3
USP3-206ENST00000558157 ACIN1Q9UKV3 1341 aaKnown RBP16.92■□□□□ 0.3
USP3-206ENST00000558157 PDS5BQ9NTI5 1447 aa16.91■□□□□ 0.3
USP3-206ENST00000558157 CEP164Q9UPV0 1460 aa16.9■□□□□ 0.3
USP3-206ENST00000558157 DNMBPQ6XZF7 1577 aa16.83■□□□□ 0.28
USP3-206ENST00000558157 LOC105371045A0A1W2PR82 267 aa16.8■□□□□ 0.28
USP3-206ENST00000558157 URB2Q14146 1524 aaKnown RBP16.8■□□□□ 0.28
USP3-206ENST00000558157 TOPBP1Q92547 1522 aa16.79■□□□□ 0.28
USP3-206ENST00000558157 CENPBP07199 599 aaPredicted RBP16.76■□□□□ 0.27
USP3-206ENST00000558157 SOGA1O94964 1423 aa16.76■□□□□ 0.27
USP3-206ENST00000558157 FGD5Q6ZNL6 1462 aa16.76■□□□□ 0.27
USP3-206ENST00000558157 FAM9AQ8IZU1 332 aaPredicted RBP16.76■□□□□ 0.27
USP3-206ENST00000558157 TTBK1Q5TCY1 1321 aaPredicted RBP16.74■□□□□ 0.27
USP3-206ENST00000558157 ERCC6Q03468 1493 aa16.74■□□□□ 0.27
USP3-206ENST00000558157 MRC2Q9UBG0 1479 aa16.74■□□□□ 0.27
USP3-206ENST00000558157 NEUROD1Q13562 356 aa16.73■□□□□ 0.27
USP3-206ENST00000558157 RUSC2Q8N2Y8 1516 aa16.72■□□□□ 0.27
USP3-206ENST00000558157 POLA1P09884 1462 aaPredicted RBP16.7■□□□□ 0.26
USP3-206ENST00000558157 THOC2Q8NI27 1593 aaKnown RBP16.68■□□□□ 0.26
USP3-206ENST00000558157 GTF3C3Q9Y5Q9 886 aa16.68■□□□□ 0.26
USP3-206ENST00000558157 EEA1Q15075 1411 aa16.67■□□□□ 0.26
USP3-206ENST00000558157 WDR62O43379 1518 aa16.66■□□□□ 0.26
USP3-206ENST00000558157 RAD54L2Q9Y4B4 1467 aa16.64■□□□□ 0.25
USP3-206ENST00000558157 WDR97A6NE52 1622 aa16.62■□□□□ 0.25
USP3-206ENST00000558157 CUX2O14529 1486 aa16.61■□□□□ 0.25
USP3-206ENST00000558157 ABCA10Q8WWZ4 1543 aa16.59■□□□□ 0.25
USP3-206ENST00000558157 KIF27Q86VH2 1401 aa16.59■□□□□ 0.25
USP3-206ENST00000558157 TARBP1Q13395 1621 aaKnown RBP16.57■□□□□ 0.24
USP3-206ENST00000558157 CSRNP3Q8WYN3 585 aa16.57■□□□□ 0.24
USP3-206ENST00000558157 EHMT2Q96KQ7 1210 aa16.55■□□□□ 0.24
USP3-206ENST00000558157 KIF21BO75037 1637 aa16.51■□□□□ 0.23
USP3-206ENST00000558157 ABCA5Q8WWZ7 1642 aa16.51■□□□□ 0.23
USP3-206ENST00000558157 IFT140Q96RY7 1462 aa16.49■□□□□ 0.23
USP3-206ENST00000558157 DIEXFQ68CQ4 756 aaKnown RBP16.47■□□□□ 0.23
USP3-206ENST00000558157 GOLGA3Q08378 1498 aa16.47■□□□□ 0.23
USP3-206ENST00000558157 TDRD9Q8NDG6 1382 aaKnown RBP16.46■□□□□ 0.23
USP3-206ENST00000558157 PRXQ9BXM0 1461 aa16.45■□□□□ 0.22
USP3-206ENST00000558157 IGF1RP08069 1367 aa16.44■□□□□ 0.22
USP3-206ENST00000558157 GAPVD1Q14C86 1478 aa16.44■□□□□ 0.22
USP3-206ENST00000558157 RAPGEF2Q9Y4G8 1499 aa16.43■□□□□ 0.22
USP3-206ENST00000558157 ZNF608Q9ULD9 1512 aaPredicted RBP16.43■□□□□ 0.22
USP3-206ENST00000558157 PBRM1Q86U86 1689 aa16.42■□□□□ 0.22
USP3-206ENST00000558157 ERICH3Q5RHP9 1530 aa16.42■□□□□ 0.22
USP3-206ENST00000558157 EIF4G3O43432 1585 aaKnown RBP16.4■□□□□ 0.22
USP3-206ENST00000558157 AQRO60306 1485 aaKnown RBP eCLIP16.4■□□□□ 0.221e-6■■■■□ 20.3
USP3-206ENST00000558157 CUL7Q14999 1698 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms