RNA–Protein interactions for RNA: ENST00000477757.5

PDLIM1-202, Transcript of PDZ and LIM domain 1, humanhuman

TSL 2

Gene PDLIM1, Length 850 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-202ENST00000477757 NISCHQ9Y2I1 1504 aa51.94■■■■■ 5.91
PDLIM1-202ENST00000477757 ABCC9O60706 1549 aa47.46■■■■■ 5.19
PDLIM1-202ENST00000477757 CCDC180Q9P1Z9 1646 aa46.97■■■■■ 5.11
PDLIM1-202ENST00000477757 DNAJC5BQ9UF47 199 aa45.02■■■■■ 4.8
PDLIM1-202ENST00000477757 RB1CC1Q8TDY2 1594 aa44.96■■■■■ 4.79
PDLIM1-202ENST00000477757 NACADO15069 1562 aa44.51■■■■■ 4.72
PDLIM1-202ENST00000477757 PABPN1Q86U42 306 aaKnown RBP eCLIP44■■■■■ 4.63
PDLIM1-202ENST00000477757 UNC13AQ9UPW8 1703 aa43.93■■■■■ 4.62
PDLIM1-202ENST00000477757 DCAF8L2P0C7V8 631 aa43.89■■■■■ 4.62
PDLIM1-202ENST00000477757 MYO15BQ96JP2 1530 aa43.74■■■■■ 4.59
PDLIM1-202ENST00000477757 BICRAQ9NZM4 1560 aa43.69■■■■■ 4.58
PDLIM1-202ENST00000477757 SHROOM4Q9ULL8 1493 aa43.13■■■■■ 4.49
PDLIM1-202ENST00000477757 ZCCHC6Q5VYS8 1495 aaKnown RBP42.96■■■■■ 4.47
PDLIM1-202ENST00000477757 DCAF1Q9Y4B6 1507 aa42.93■■■■■ 4.46
PDLIM1-202ENST00000477757 CC2D2AQ9P2K1 1620 aa42.88■■■■■ 4.45
PDLIM1-202ENST00000477757 CECR2Q9BXF3 1484 aa42.85■■■■■ 4.45
PDLIM1-202ENST00000477757 SCRIBQ14160 1630 aa42.68■■■■■ 4.42
PDLIM1-202ENST00000477757 EIF4G1Q04637 1599 aaKnown RBP42.65■■■■■ 4.42
PDLIM1-202ENST00000477757 DNAJC5Q9H3Z4 198 aa41.82■■■■■ 4.29
PDLIM1-202ENST00000477757 CUX2O14529 1486 aa41.24■■■■■ 4.19
PDLIM1-202ENST00000477757 NCAPD3P42695 1498 aa41.08■■■■■ 4.17
PDLIM1-202ENST00000477757 ERCC6Q03468 1493 aa41.03■■■■■ 4.16
PDLIM1-202ENST00000477757 ATAD2BQ9ULI0 1458 aa40.85■■■■■ 4.13
PDLIM1-202ENST00000477757 HMGXB3Q12766 1538 aa40.77■■■■■ 4.12
PDLIM1-202ENST00000477757 SMARCA2P51531 1590 aa40.74■■■■■ 4.11
PDLIM1-202ENST00000477757 SMARCA4P51532 1647 aa40.68■■■■■ 4.1
PDLIM1-202ENST00000477757 NESP48681 1621 aa40.6■■■■■ 4.09
PDLIM1-202ENST00000477757 BAZ1BQ9UIG0 1483 aaKnown RBP40.42■■■■■ 4.06
PDLIM1-202ENST00000477757 THOC2Q8NI27 1593 aaKnown RBP40.41■■■■■ 4.06
PDLIM1-202ENST00000477757 BAZ1AQ9NRL2 1556 aaPredicted RBP40.39■■■■■ 4.06
PDLIM1-202ENST00000477757 PEG3Q9GZU2 1588 aa40.33■■■■■ 4.05
PDLIM1-202ENST00000477757 LAMC3Q9Y6N6 1575 aa40.27■■■■■ 4.04
PDLIM1-202ENST00000477757 KIF21AQ7Z4S6 1674 aa40.08■■■■■ 4.01
PDLIM1-202ENST00000477757 PDS5BQ9NTI5 1447 aa40.01■■■■■ 4
PDLIM1-202ENST00000477757 MROH2BQ7Z745 1585 aa40■■■■□ 3.99
PDLIM1-202ENST00000477757 CADPSQ9ULU8 1353 aa39.76■■■■□ 3.96
PDLIM1-202ENST00000477757 MRC2Q9UBG0 1479 aa39.75■■■■□ 3.95
PDLIM1-202ENST00000477757 WDR62O43379 1518 aa39.7■■■■□ 3.95
PDLIM1-202ENST00000477757 TRIM41Q8WV44 630 aa39.66■■■■□ 3.94
PDLIM1-202ENST00000477757 WIZO95785 1651 aa39.48■■■■□ 3.91
PDLIM1-202ENST00000477757 CEP164Q9UPV0 1460 aa39.45■■■■□ 3.91
PDLIM1-202ENST00000477757 FANCD2Q9BXW9 1451 aa39.34■■■■□ 3.89
PDLIM1-202ENST00000477757 CFTRP13569 1480 aa39.22■■■■□ 3.87
PDLIM1-202ENST00000477757 OSCARQ8IYS5 282 aa39.11■■■■□ 3.85
PDLIM1-202ENST00000477757 URB2Q14146 1524 aaKnown RBP39.07■■■■□ 3.84
PDLIM1-202ENST00000477757 TOP2AP11388 1531 aaKnown RBP39■■■■□ 3.83
PDLIM1-202ENST00000477757 RSF1Q96T23 1441 aaPredicted RBP38.93■■■■□ 3.82
PDLIM1-202ENST00000477757 PRDM2Q13029 1718 aa38.81■■■■□ 3.8
PDLIM1-202ENST00000477757 RIMBP3CA6NJZ7 1639 aa38.78■■■■□ 3.8
PDLIM1-202ENST00000477757 RIMBP3BA6NNM3 1639 aa38.78■■■■□ 3.8
PDLIM1-202ENST00000477757 RIMBP3Q9UFD9 1639 aa38.78■■■■□ 3.8
PDLIM1-202ENST00000477757 IFT140Q96RY7 1462 aa38.68■■■■□ 3.78
PDLIM1-202ENST00000477757 ZNF608Q9ULD9 1512 aaPredicted RBP38.66■■■■□ 3.78
PDLIM1-202ENST00000477757 ARHGEF11O15085 1522 aa38.6■■■■□ 3.77
PDLIM1-202ENST00000477757 TOPBP1Q92547 1522 aa38.53■■■■□ 3.76
PDLIM1-202ENST00000477757 CCDC88BA6NC98 1476 aa38.49■■■■□ 3.75
PDLIM1-202ENST00000477757 EIF4G3O43432 1585 aaKnown RBP38.48■■■■□ 3.75
PDLIM1-202ENST00000477757 ABCC8Q09428 1581 aa38.4■■■■□ 3.74
PDLIM1-202ENST00000477757 DNMBPQ6XZF7 1577 aa38.36■■■■□ 3.73
PDLIM1-202ENST00000477757 CHD1O14646 1710 aa38.28■■■■□ 3.72
PDLIM1-202ENST00000477757 TARBP1Q13395 1621 aaKnown RBP38.27■■■■□ 3.72
PDLIM1-202ENST00000477757 CYB5RLQ6IPT4 315 aa38.21■■■■□ 3.71
PDLIM1-202ENST00000477757 AQRO60306 1485 aaKnown RBP eCLIP38.2■■■■□ 3.718e-7■■■■□ 21.5
PDLIM1-202ENST00000477757 ARAP1Q96P48 1450 aa38.18■■■■□ 3.7
PDLIM1-202ENST00000477757 POLA1P09884 1462 aaPredicted RBP38.1■■■■□ 3.69
PDLIM1-202ENST00000477757 FBLN2P98095 1184 aa37.98■■■■□ 3.67
PDLIM1-202ENST00000477757 TRHP20396 242 aaPredicted RBP37.97■■■■□ 3.67
PDLIM1-202ENST00000477757 RAD54L2Q9Y4B4 1467 aa37.92■■■■□ 3.66
PDLIM1-202ENST00000477757 WDR97A6NE52 1622 aa37.88■■■■□ 3.65
PDLIM1-202ENST00000477757 CLASP1Q7Z460 1538 aa37.87■■■■□ 3.65
PDLIM1-202ENST00000477757 SOGA1O94964 1423 aa37.85■■■■□ 3.65
PDLIM1-202ENST00000477757 SNAPC4Q5SXM2 1469 aa37.84■■■■□ 3.65
PDLIM1-202ENST00000477757 TDRD9Q8NDG6 1382 aaKnown RBP37.84■■■■□ 3.65
PDLIM1-202ENST00000477757 FGD5Q6ZNL6 1462 aa37.76■■■■□ 3.63
PDLIM1-202ENST00000477757 SYNJ1O43426 1573 aa37.76■■■■□ 3.63
PDLIM1-202ENST00000477757 MAGI1Q96QZ7 1491 aaPredicted RBP37.75■■■■□ 3.63
PDLIM1-202ENST00000477757 GRIN2BQ13224 1484 aa37.65■■■■□ 3.62
PDLIM1-202ENST00000477757 CUX1P39880 1505 aa37.64■■■■□ 3.62
PDLIM1-202ENST00000477757 CHMP7Q8WUX9 453 aaPredicted RBP37.63■■■■□ 3.61
PDLIM1-202ENST00000477757 SYNJ2O15056 1496 aa37.61■■■■□ 3.61
PDLIM1-202ENST00000477757 PBRM1Q86U86 1689 aa37.48■■■■□ 3.59
PDLIM1-202ENST00000477757 GAPVD1Q14C86 1478 aa37.45■■■■□ 3.59
PDLIM1-202ENST00000477757 ABCA5Q8WWZ7 1642 aa37.36■■■■□ 3.57
PDLIM1-202ENST00000477757 AEBP2Q6ZN18 517 aaPredicted RBP37.33■■■■□ 3.57
PDLIM1-202ENST00000477757 ABCA10Q8WWZ4 1543 aa37.32■■■■□ 3.57
PDLIM1-202ENST00000477757 GRIN2AQ12879 1464 aa37.19■■■■□ 3.54
PDLIM1-202ENST00000477757 ERCC6L2Q5T890 1561 aa37.18■■■■□ 3.54
PDLIM1-202ENST00000477757 ADAMTS12P58397 1594 aa37.12■■■■□ 3.53
PDLIM1-202ENST00000477757 NUP160Q12769 1436 aa37.1■■■■□ 3.53
PDLIM1-202ENST00000477757 CEP170Q5SW79 1584 aa37.08■■■■□ 3.53
PDLIM1-202ENST00000477757 SHROOM2Q13796 1616 aa37.03■■■■□ 3.52
PDLIM1-202ENST00000477757 WRNQ14191 1432 aaPredicted RBP eCLIP37.01■■■■□ 3.51
PDLIM1-202ENST00000477757 FHAD1B1AJZ9 1412 aa36.93■■■■□ 3.5
PDLIM1-202ENST00000477757 BIVM-ERCC5R4GMW8 1640 aa36.9■■■■□ 3.5
PDLIM1-202ENST00000477757 TOP2BQ02880 1626 aa36.88■■■■□ 3.49
PDLIM1-202ENST00000477757 ERICH3Q5RHP9 1530 aa36.85■■■■□ 3.49
PDLIM1-202ENST00000477757 KIF13AQ9H1H9 1805 aa36.83■■■■□ 3.49
PDLIM1-202ENST00000477757 PRG4Q92954 1404 aaPredicted RBP36.72■■■■□ 3.47
PDLIM1-202ENST00000477757 RUSC2Q8N2Y8 1516 aa36.63■■■■□ 3.45
PDLIM1-202ENST00000477757 SUPT5HO00267 1087 aaKnown RBP36.58■■■■□ 3.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.8 ms