RNA–Protein interactions for RNA: ENST00000409161.5

SHANK2-203, Transcript of SH3 and multiple ankyrin repeat domains 2, humanhuman

TSL 1 (best) BASIC

Gene SHANK2, Length 9,208 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK2-203ENST00000409161 PELP1Q8IZL8 1130 aaKnown RBP20.06■□□□□ 0.8
SHANK2-203ENST00000409161 DCAF8L2P0C7V8 631 aa19.61■□□□□ 0.73
SHANK2-203ENST00000409161 MYT1Q01538 1121 aa19.21■□□□□ 0.67
SHANK2-203ENST00000409161 CCER1Q8TC90 406 aaPredicted RBP19.06■□□□□ 0.64
SHANK2-203ENST00000409161 ERICH6Q7L0X2 663 aa18.92■□□□□ 0.62
SHANK2-203ENST00000409161 SUPT5HO00267 1087 aaKnown RBP18.89■□□□□ 0.61
SHANK2-203ENST00000409161 CENPBP07199 599 aaPredicted RBP18.81■□□□□ 0.6
SHANK2-203ENST00000409161 APLP2Q06481 763 aa18.8■□□□□ 0.6
SHANK2-203ENST00000409161 ZEB1P37275 1124 aaPredicted RBP18.63■□□□□ 0.57
SHANK2-203ENST00000409161 FAM9AQ8IZU1 332 aaPredicted RBP18.6■□□□□ 0.57
SHANK2-203ENST00000409161 NISCHQ9Y2I1 1504 aa18.54■□□□□ 0.56
SHANK2-203ENST00000409161 NEFLP07196 543 aa18.41■□□□□ 0.54
SHANK2-203ENST00000409161 YTHDC1Q96MU7 727 aaKnown RBP18.37■□□□□ 0.53
SHANK2-203ENST00000409161 SHROOM4Q9ULL8 1493 aa18.3■□□□□ 0.52
SHANK2-203ENST00000409161 EHMT2Q96KQ7 1210 aa18.22■□□□□ 0.51
SHANK2-203ENST00000409161 PCGF6Q9BYE7 350 aa18.21■□□□□ 0.51
SHANK2-203ENST00000409161 DAXXQ9UER7 740 aaPredicted RBP18.08■□□□□ 0.48
SHANK2-203ENST00000409161 TTBK1Q5TCY1 1321 aaPredicted RBP17.92■□□□□ 0.46
SHANK2-203ENST00000409161 TRIM41Q8WV44 630 aa17.7■□□□□ 0.42
SHANK2-203ENST00000409161 RTL5Q5HYW3 569 aaPredicted RBP17.69■□□□□ 0.42
SHANK2-203ENST00000409161 UBTFP17480 764 aaKnown RBP17.59■□□□□ 0.41
SHANK2-203ENST00000409161 ZNF316A6NFI3 1004 aaPredicted RBP17.59■□□□□ 0.41
SHANK2-203ENST00000409161 ATP1B4Q9UN42 357 aaPredicted RBP17.58■□□□□ 0.41
SHANK2-203ENST00000409161 TRIM26Q12899 539 aaPredicted RBP17.55■□□□□ 0.4
SHANK2-203ENST00000409161 RANGAP1P46060 587 aaPredicted RBP17.47■□□□□ 0.39
SHANK2-203ENST00000409161 HRCP23327 699 aa17.38■□□□□ 0.37
SHANK2-203ENST00000409161 CLSPNQ9HAW4 1339 aa17.31■□□□□ 0.36
SHANK2-203ENST00000409161 POLR3GLQ9BT43 218 aa17.15■□□□□ 0.34
SHANK2-203ENST00000409161 DIEXFQ68CQ4 756 aaKnown RBP17.12■□□□□ 0.33
SHANK2-203ENST00000409161 GLIPR1L2Q4G1C9 344 aa17.09■□□□□ 0.33
SHANK2-203ENST00000409161 CDK11AQ9UQ88 783 aaPredicted RBP17.09■□□□□ 0.33
SHANK2-203ENST00000409161 ZBTB47Q9UFB7 747 aaPredicted RBP17.05■□□□□ 0.32
SHANK2-203ENST00000409161 MYT1LQ9UL68 1186 aa17.02■□□□□ 0.31
SHANK2-203ENST00000409161 ANP32BQ92688 251 aaKnown RBP16.96■□□□□ 0.31
SHANK2-203ENST00000409161 ITGAEP38570 1179 aa16.94■□□□□ 0.3
SHANK2-203ENST00000409161 ANP32AP39687 249 aaKnown RBP16.94■□□□□ 0.3
SHANK2-203ENST00000409161 SLC4A1APQ9BWU0 796 aaKnown RBP16.93■□□□□ 0.3
SHANK2-203ENST00000409161 PPARGC1BQ86YN6 1023 aaKnown RBP16.93■□□□□ 0.3
SHANK2-203ENST00000409161 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.9■□□□□ 0.3
SHANK2-203ENST00000409161 HNRNPUL2Q1KMD3 747 aaKnown RBP16.9■□□□□ 0.3
SHANK2-203ENST00000409161 ANP32CO43423 234 aa16.87■□□□□ 0.29
SHANK2-203ENST00000409161 GTF3C3Q9Y5Q9 886 aa16.8■□□□□ 0.28
SHANK2-203ENST00000409161 CANXP27824 592 aaKnown RBP16.77■□□□□ 0.27
SHANK2-203ENST00000409161 CNGB1Q14028 1251 aaPredicted RBP16.75■□□□□ 0.27
SHANK2-203ENST00000409161 NEFMP07197 916 aa16.72■□□□□ 0.27
SHANK2-203ENST00000409161 EIF5BO60841 1220 aaKnown RBP16.69■□□□□ 0.26
SHANK2-203ENST00000409161 UPF2Q9HAU5 1272 aaKnown RBP16.67■□□□□ 0.26
SHANK2-203ENST00000409161 BCANQ96GW7 911 aa16.64■□□□□ 0.25
SHANK2-203ENST00000409161 HSP90AA1P07900 732 aaKnown RBP16.63■□□□□ 0.25
SHANK2-203ENST00000409161 FAM50AQ14320 339 aaKnown RBP16.62■□□□□ 0.25
SHANK2-203ENST00000409161 TRIM52Q96A61 297 aa16.57■□□□□ 0.24
SHANK2-203ENST00000409161 CHIC1Q5VXU3 224 aa16.57■□□□□ 0.24
SHANK2-203ENST00000409161 ACIN1Q9UKV3 1341 aaKnown RBP16.56■□□□□ 0.24
SHANK2-203ENST00000409161 LOC105371045A0A1W2PR82 267 aa16.55■□□□□ 0.24
SHANK2-203ENST00000409161 NEUROD1Q13562 356 aa16.5■□□□□ 0.23
SHANK2-203ENST00000409161 TNNT2P45379 298 aaPredicted RBP16.45■□□□□ 0.22
SHANK2-203ENST00000409161 ANP32EQ9BTT0 268 aa16.44■□□□□ 0.22
SHANK2-203ENST00000409161 NPM2Q86SE8 214 aaKnown RBP16.42■□□□□ 0.22
SHANK2-203ENST00000409161 SLC24A1O60721 1099 aa16.4■□□□□ 0.22
SHANK2-203ENST00000409161 ZNF326Q5BKZ1 582 aaKnown RBP16.38■□□□□ 0.21
SHANK2-203ENST00000409161 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.34■□□□□ 0.21
SHANK2-203ENST00000409161 CDK11BP21127 795 aaKnown RBP16.34■□□□□ 0.21
SHANK2-203ENST00000409161 BCL11AQ9H165 835 aa16.28■□□□□ 0.2
SHANK2-203ENST00000409161 DDRGK1Q96HY6 314 aa16.27■□□□□ 0.19
SHANK2-203ENST00000409161 FKBP8Q14318 412 aa16.27■□□□□ 0.19
SHANK2-203ENST00000409161 TRIM44Q96DX7 344 aaPredicted RBP16.26■□□□□ 0.19
SHANK2-203ENST00000409161 BECN1Q14457 450 aa16.26■□□□□ 0.19
SHANK2-203ENST00000409161 TONSLQ96HA7 1378 aa16.23■□□□□ 0.19
SHANK2-203ENST00000409161 CCDC136Q96JN2 1154 aa16.23■□□□□ 0.19
SHANK2-203ENST00000409161 GOLGA6L22H0YM25 854 aa16.21■□□□□ 0.18
SHANK2-203ENST00000409161 NBR1Q14596 966 aa16.2■□□□□ 0.18
SHANK2-203ENST00000409161 DCAF1Q9Y4B6 1507 aa16.19■□□□□ 0.18
SHANK2-203ENST00000409161 MYH16Q9H6N6 1097 aa16.18■□□□□ 0.18
SHANK2-203ENST00000409161 NCLP19338 710 aaKnown RBP16.17■□□□□ 0.18
SHANK2-203ENST00000409161 HNRNPUQ00839 825 aaKnown RBP eCLIP16.17■□□□□ 0.18
SHANK2-203ENST00000409161 ERICH6BQ5W0A0 696 aa16.14■□□□□ 0.17
SHANK2-203ENST00000409161 TMC1Q8TDI8 760 aa16.07■□□□□ 0.16
SHANK2-203ENST00000409161 ZRSR1Q15695 479 aaKnown RBP16.06■□□□□ 0.16
SHANK2-203ENST00000409161 WDR43Q15061 677 aaKnown RBP eCLIP16.05■□□□□ 0.16
SHANK2-203ENST00000409161 CCDC180Q9P1Z9 1646 aa16.04■□□□□ 0.16
SHANK2-203ENST00000409161 ARXQ96QS3 562 aa16.02■□□□□ 0.15
SHANK2-203ENST00000409161 CASC1Q6TDU7 716 aa16.01■□□□□ 0.15
SHANK2-203ENST00000409161 GOLGA6L6A8MZA4 724 aa16■□□□□ 0.15
SHANK2-203ENST00000409161 PTMAP06454 111 aaKnown RBP16■□□□□ 0.15
SHANK2-203ENST00000409161 PPM1GO15355 546 aaPredicted RBP15.99■□□□□ 0.15
SHANK2-203ENST00000409161 FAM9BQ8IZU0 186 aa15.99■□□□□ 0.15
SHANK2-203ENST00000409161 DNTTIP2Q5QJE6 756 aaKnown RBP15.98■□□□□ 0.15
SHANK2-203ENST00000409161 ESF1Q9H501 851 aaKnown RBP15.96■□□□□ 0.15
SHANK2-203ENST00000409161 NRDCO43847 1150 aa15.96■□□□□ 0.15
SHANK2-203ENST00000409161 CHAF1AQ13111 956 aaPredicted RBP15.92■□□□□ 0.14
SHANK2-203ENST00000409161 MRS2Q9HD23 443 aa15.9■□□□□ 0.14
SHANK2-203ENST00000409161 NAP1L5Q96NT1 182 aaPredicted RBP15.89■□□□□ 0.13
SHANK2-203ENST00000409161 DDX10Q13206 875 aaKnown RBP15.89■□□□□ 0.13
SHANK2-203ENST00000409161 STAG3Q9UJ98 1225 aa15.88■□□□□ 0.13
SHANK2-203ENST00000409161 L1TD1Q5T7N2 865 aaKnown RBP15.84■□□□□ 0.13
SHANK2-203ENST00000409161 CHMP4BQ9H444 224 aaKnown RBP15.84■□□□□ 0.13
SHANK2-203ENST00000409161 CSRNP3Q8WYN3 585 aa15.83■□□□□ 0.13
SHANK2-203ENST00000409161 ZNF777Q9ULD5 760 aaPredicted RBP15.81■□□□□ 0.12
SHANK2-203ENST00000409161 FBLN2P98095 1184 aa15.81■□□□□ 0.12
SHANK2-203ENST00000409161 SCAF1Q9H7N4 1312 aaKnown RBP15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms