RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 NISCHQ9Y2I1 1504 aa28.57■■■□□ 2.16
USP3-213ENST00000559711 CCDC180Q9P1Z9 1646 aa24.8■■□□□ 1.56
USP3-213ENST00000559711 ZCCHC6Q5VYS8 1495 aaKnown RBP24.02■■□□□ 1.44
USP3-213ENST00000559711 DCAF1Q9Y4B6 1507 aa23.66■■□□□ 1.38
USP3-213ENST00000559711 DCAF8L2P0C7V8 631 aa23.57■■□□□ 1.36
USP3-213ENST00000559711 ABCC9O60706 1549 aa23.42■■□□□ 1.34
USP3-213ENST00000559711 MYO15BQ96JP2 1530 aa23.36■■□□□ 1.33
USP3-213ENST00000559711 SHROOM4Q9ULL8 1493 aa23.33■■□□□ 1.33
USP3-213ENST00000559711 NACADO15069 1562 aa23.14■■□□□ 1.29
USP3-213ENST00000559711 RB1CC1Q8TDY2 1594 aa22.89■■□□□ 1.26
USP3-213ENST00000559711 SCRIBQ14160 1630 aa22.81■■□□□ 1.24
USP3-213ENST00000559711 SUPT5HO00267 1087 aaKnown RBP22.52■■□□□ 1.2
USP3-213ENST00000559711 UNC13AQ9UPW8 1703 aa22.32■■□□□ 1.16
USP3-213ENST00000559711 RSF1Q96T23 1441 aaPredicted RBP22.23■■□□□ 1.15
USP3-213ENST00000559711 BICRAQ9NZM4 1560 aa22.22■■□□□ 1.15
USP3-213ENST00000559711 CECR2Q9BXF3 1484 aa22.2■■□□□ 1.14
USP3-213ENST00000559711 PABPN1Q86U42 306 aaKnown RBP eCLIP22.15■■□□□ 1.14
USP3-213ENST00000559711 MROH2BQ7Z745 1585 aa22.07■■□□□ 1.12
USP3-213ENST00000559711 BAZ1AQ9NRL2 1556 aaPredicted RBP22.04■■□□□ 1.12
USP3-213ENST00000559711 SMARCA4P51532 1647 aa21.9■■□□□ 1.1
USP3-213ENST00000559711 WIZO95785 1651 aa21.83■■□□□ 1.09
USP3-213ENST00000559711 PEG3Q9GZU2 1588 aa21.68■■□□□ 1.06
USP3-213ENST00000559711 CHIC1Q5VXU3 224 aa21.66■■□□□ 1.06
USP3-213ENST00000559711 TOP2AP11388 1531 aaKnown RBP21.65■■□□□ 1.06
USP3-213ENST00000559711 ATAD2BQ9ULI0 1458 aa21.59■■□□□ 1.05
USP3-213ENST00000559711 SMARCA2P51531 1590 aa21.54■■□□□ 1.04
USP3-213ENST00000559711 EIF4G1Q04637 1599 aaKnown RBP21.53■■□□□ 1.04
USP3-213ENST00000559711 CCDC88BA6NC98 1476 aa21.47■■□□□ 1.03
USP3-213ENST00000559711 BAZ1BQ9UIG0 1483 aaKnown RBP21.43■■□□□ 1.02
USP3-213ENST00000559711 NCAPD3P42695 1498 aa21.41■■□□□ 1.02
USP3-213ENST00000559711 HMGXB3Q12766 1538 aa21.33■■□□□ 1.01
USP3-213ENST00000559711 TRIM41Q8WV44 630 aa21.19■□□□□ 0.98
USP3-213ENST00000559711 CC2D2AQ9P2K1 1620 aa21.17■□□□□ 0.98
USP3-213ENST00000559711 ABCC8Q09428 1581 aa20.98■□□□□ 0.95
USP3-213ENST00000559711 CFTRP13569 1480 aa20.94■□□□□ 0.94
USP3-213ENST00000559711 WRNQ14191 1432 aaPredicted RBP eCLIP20.9■□□□□ 0.94
USP3-213ENST00000559711 CADPSQ9ULU8 1353 aa20.87■□□□□ 0.93
USP3-213ENST00000559711 LOC105371045A0A1W2PR82 267 aa20.8■□□□□ 0.92
USP3-213ENST00000559711 FAM9AQ8IZU1 332 aaPredicted RBP20.77■□□□□ 0.91
USP3-213ENST00000559711 SYNJ1O43426 1573 aa20.75■□□□□ 0.91
USP3-213ENST00000559711 DNAJC5BQ9UF47 199 aa20.7■□□□□ 0.91
USP3-213ENST00000559711 TOP2BQ02880 1626 aa20.68■□□□□ 0.9
USP3-213ENST00000559711 SOGA1O94964 1423 aa20.67■□□□□ 0.9
USP3-213ENST00000559711 EEA1Q15075 1411 aa20.66■□□□□ 0.9
USP3-213ENST00000559711 PRDM2Q13029 1718 aa20.66■□□□□ 0.9
USP3-213ENST00000559711 BIVM-ERCC5R4GMW8 1640 aa20.63■□□□□ 0.89
USP3-213ENST00000559711 CUX1P39880 1505 aa20.63■□□□□ 0.89
USP3-213ENST00000559711 LAMC3Q9Y6N6 1575 aa20.6■□□□□ 0.89
USP3-213ENST00000559711 FANCD2Q9BXW9 1451 aa20.59■□□□□ 0.89
USP3-213ENST00000559711 NESP48681 1621 aa20.59■□□□□ 0.89
USP3-213ENST00000559711 RUSC2Q8N2Y8 1516 aa20.57■□□□□ 0.88
USP3-213ENST00000559711 CSRNP3Q8WYN3 585 aa20.56■□□□□ 0.88
USP3-213ENST00000559711 PDS5BQ9NTI5 1447 aa20.49■□□□□ 0.87
USP3-213ENST00000559711 CEP164Q9UPV0 1460 aa20.44■□□□□ 0.86
USP3-213ENST00000559711 EHMT2Q96KQ7 1210 aa20.43■□□□□ 0.86
USP3-213ENST00000559711 DNMBPQ6XZF7 1577 aa20.4■□□□□ 0.86
USP3-213ENST00000559711 TOPBP1Q92547 1522 aa20.38■□□□□ 0.85
USP3-213ENST00000559711 FGD5Q6ZNL6 1462 aa20.38■□□□□ 0.85
USP3-213ENST00000559711 KIF27Q86VH2 1401 aa20.37■□□□□ 0.85
USP3-213ENST00000559711 TNIKQ9UKE5 1360 aa20.35■□□□□ 0.85
USP3-213ENST00000559711 GOLGA3Q08378 1498 aa20.34■□□□□ 0.85
USP3-213ENST00000559711 URB2Q14146 1524 aaKnown RBP20.33■□□□□ 0.84
USP3-213ENST00000559711 KIF21BO75037 1637 aa20.32■□□□□ 0.84
USP3-213ENST00000559711 POLA1P09884 1462 aaPredicted RBP20.29■□□□□ 0.84
USP3-213ENST00000559711 CUX2O14529 1486 aa20.28■□□□□ 0.84
USP3-213ENST00000559711 PRXQ9BXM0 1461 aa20.27■□□□□ 0.84
USP3-213ENST00000559711 UBTFP17480 764 aaKnown RBP20.26■□□□□ 0.83
USP3-213ENST00000559711 KIF21AQ7Z4S6 1674 aa20.26■□□□□ 0.83
USP3-213ENST00000559711 ABCA10Q8WWZ4 1543 aa20.24■□□□□ 0.83
USP3-213ENST00000559711 RAPGEF2Q9Y4G8 1499 aa20.23■□□□□ 0.83
USP3-213ENST00000559711 IGF1RP08069 1367 aa20.22■□□□□ 0.83
USP3-213ENST00000559711 RAD54L2Q9Y4B4 1467 aa20.22■□□□□ 0.83
USP3-213ENST00000559711 CEP162Q5TB80 1403 aa20.2■□□□□ 0.82
USP3-213ENST00000559711 ERICH3Q5RHP9 1530 aa20.2■□□□□ 0.82
USP3-213ENST00000559711 MRC2Q9UBG0 1479 aa20.19■□□□□ 0.82
USP3-213ENST00000559711 CARMIL1Q5VZK9 1371 aa20.1■□□□□ 0.81
USP3-213ENST00000559711 WDR62O43379 1518 aa20.07■□□□□ 0.8
USP3-213ENST00000559711 ERCC6Q03468 1493 aa20.07■□□□□ 0.8
USP3-213ENST00000559711 WDR97A6NE52 1622 aa20.06■□□□□ 0.8
USP3-213ENST00000559711 TDRD9Q8NDG6 1382 aaKnown RBP20.04■□□□□ 0.8
USP3-213ENST00000559711 TARBP1Q13395 1621 aaKnown RBP20.04■□□□□ 0.8
USP3-213ENST00000559711 CLIP1P30622 1438 aa20.04■□□□□ 0.8
USP3-213ENST00000559711 GAPVD1Q14C86 1478 aa20.01■□□□□ 0.79
USP3-213ENST00000559711 ABCA5Q8WWZ7 1642 aa20■□□□□ 0.79
USP3-213ENST00000559711 IFT140Q96RY7 1462 aa19.98■□□□□ 0.79
USP3-213ENST00000559711 THOC2Q8NI27 1593 aaKnown RBP19.95■□□□□ 0.78
USP3-213ENST00000559711 CUL7Q14999 1698 aa19.94■□□□□ 0.78
USP3-213ENST00000559711 TRIM26Q12899 539 aaPredicted RBP19.93■□□□□ 0.78
USP3-213ENST00000559711 PCGF6Q9BYE7 350 aa19.91■□□□□ 0.78
USP3-213ENST00000559711 AQRO60306 1485 aaKnown RBP eCLIP19.89■□□□□ 0.775e-8■■■□□ 17.4
USP3-213ENST00000559711 VPS8Q8N3P4 1428 aa19.87■□□□□ 0.77
USP3-213ENST00000559711 RANGAP1P46060 587 aaPredicted RBP19.86■□□□□ 0.77
USP3-213ENST00000559711 GRIN2BQ13224 1484 aa19.84■□□□□ 0.77
USP3-213ENST00000559711 ZNF608Q9ULD9 1512 aaPredicted RBP19.84■□□□□ 0.77
USP3-213ENST00000559711 ARAP1Q96P48 1450 aa19.82■□□□□ 0.76
USP3-213ENST00000559711 FHAD1B1AJZ9 1412 aa19.81■□□□□ 0.76
USP3-213ENST00000559711 ARHGAP35Q9NRY4 1499 aa19.81■□□□□ 0.76
USP3-213ENST00000559711 PBRM1Q86U86 1689 aa19.77■□□□□ 0.76
USP3-213ENST00000559711 PPARGC1BQ86YN6 1023 aaKnown RBP19.77■□□□□ 0.76
USP3-213ENST00000559711 ADAMTS12P58397 1594 aa19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms