RNA–Protein interactions for RNA: ENST00000589347.1

CLPTM1-211, Transcript of CLPTM1, transmembrane protein, humanhuman

TSL 3

Gene CLPTM1, Length 638 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1-211ENST00000589347 NISCHQ9Y2I1 1504 aa26.08■■□□□ 1.77
CLPTM1-211ENST00000589347 ABCC9O60706 1549 aa23.82■■□□□ 1.4
CLPTM1-211ENST00000589347 CCDC180Q9P1Z9 1646 aa23.48■■□□□ 1.35
CLPTM1-211ENST00000589347 DNAJC5BQ9UF47 199 aa22.84■■□□□ 1.25
CLPTM1-211ENST00000589347 RB1CC1Q8TDY2 1594 aa22.48■■□□□ 1.19
CLPTM1-211ENST00000589347 NACADO15069 1562 aa22.21■■□□□ 1.15
CLPTM1-211ENST00000589347 UNC13AQ9UPW8 1703 aa22■■□□□ 1.11
CLPTM1-211ENST00000589347 PABPN1Q86U42 306 aaKnown RBP eCLIP22■■□□□ 1.11
CLPTM1-211ENST00000589347 BICRAQ9NZM4 1560 aa21.9■■□□□ 1.1
CLPTM1-211ENST00000589347 MYO15BQ96JP2 1530 aa21.8■■□□□ 1.08
CLPTM1-211ENST00000589347 DCAF8L2P0C7V8 631 aa21.74■■□□□ 1.07
CLPTM1-211ENST00000589347 ZCCHC6Q5VYS8 1495 aaKnown RBP21.71■■□□□ 1.07
CLPTM1-211ENST00000589347 DCAF1Q9Y4B6 1507 aa21.62■■□□□ 1.05
CLPTM1-211ENST00000589347 SHROOM4Q9ULL8 1493 aa21.6■■□□□ 1.05
CLPTM1-211ENST00000589347 CC2D2AQ9P2K1 1620 aa21.55■■□□□ 1.04
CLPTM1-211ENST00000589347 CECR2Q9BXF3 1484 aa21.54■■□□□ 1.04
CLPTM1-211ENST00000589347 DNAJC5Q9H3Z4 198 aa21.41■■□□□ 1.02
CLPTM1-211ENST00000589347 EIF4G1Q04637 1599 aaKnown RBP21.38■■□□□ 1.01
CLPTM1-211ENST00000589347 SCRIBQ14160 1630 aa21.29■■□□□ 1
CLPTM1-211ENST00000589347 CUX2O14529 1486 aa20.86■□□□□ 0.93
CLPTM1-211ENST00000589347 ERCC6Q03468 1493 aa20.59■□□□□ 0.89
CLPTM1-211ENST00000589347 NCAPD3P42695 1498 aa20.5■□□□□ 0.87
CLPTM1-211ENST00000589347 SMARCA4P51532 1647 aa20.36■□□□□ 0.85
CLPTM1-211ENST00000589347 HMGXB3Q12766 1538 aa20.34■□□□□ 0.85
CLPTM1-211ENST00000589347 ATAD2BQ9ULI0 1458 aa20.34■□□□□ 0.85
CLPTM1-211ENST00000589347 THOC2Q8NI27 1593 aaKnown RBP20.33■□□□□ 0.84
CLPTM1-211ENST00000589347 NESP48681 1621 aa20.31■□□□□ 0.84
CLPTM1-211ENST00000589347 BAZ1AQ9NRL2 1556 aaPredicted RBP20.3■□□□□ 0.84
CLPTM1-211ENST00000589347 SMARCA2P51531 1590 aa20.27■□□□□ 0.84
CLPTM1-211ENST00000589347 PEG3Q9GZU2 1588 aa20.15■□□□□ 0.82
CLPTM1-211ENST00000589347 LAMC3Q9Y6N6 1575 aa20.14■□□□□ 0.81
CLPTM1-211ENST00000589347 TRIM41Q8WV44 630 aa20.12■□□□□ 0.81
CLPTM1-211ENST00000589347 BAZ1BQ9UIG0 1483 aaKnown RBP20.09■□□□□ 0.81
CLPTM1-211ENST00000589347 KIF21AQ7Z4S6 1674 aa20.07■□□□□ 0.8
CLPTM1-211ENST00000589347 MROH2BQ7Z745 1585 aa20.06■□□□□ 0.8
CLPTM1-211ENST00000589347 PDS5BQ9NTI5 1447 aa19.98■□□□□ 0.79
CLPTM1-211ENST00000589347 WIZO95785 1651 aa19.91■□□□□ 0.78
CLPTM1-211ENST00000589347 WDR62O43379 1518 aa19.9■□□□□ 0.78
CLPTM1-211ENST00000589347 MRC2Q9UBG0 1479 aa19.88■□□□□ 0.77
CLPTM1-211ENST00000589347 CADPSQ9ULU8 1353 aa19.8■□□□□ 0.76
CLPTM1-211ENST00000589347 RSF1Q96T23 1441 aaPredicted RBP19.72■□□□□ 0.75
CLPTM1-211ENST00000589347 TOP2AP11388 1531 aaKnown RBP19.71■□□□□ 0.75
CLPTM1-211ENST00000589347 CEP164Q9UPV0 1460 aa19.67■□□□□ 0.74
CLPTM1-211ENST00000589347 OSCARQ8IYS5 282 aa19.66■□□□□ 0.74
CLPTM1-211ENST00000589347 PRDM2Q13029 1718 aa19.6■□□□□ 0.73
CLPTM1-211ENST00000589347 FANCD2Q9BXW9 1451 aa19.59■□□□□ 0.73
CLPTM1-211ENST00000589347 RIMBP3CA6NJZ7 1639 aa19.58■□□□□ 0.73
CLPTM1-211ENST00000589347 RIMBP3BA6NNM3 1639 aa19.58■□□□□ 0.73
CLPTM1-211ENST00000589347 RIMBP3Q9UFD9 1639 aa19.58■□□□□ 0.73
CLPTM1-211ENST00000589347 CFTRP13569 1480 aa19.5■□□□□ 0.71
CLPTM1-211ENST00000589347 URB2Q14146 1524 aaKnown RBP19.49■□□□□ 0.71
CLPTM1-211ENST00000589347 ARHGEF11O15085 1522 aa19.47■□□□□ 0.71
CLPTM1-211ENST00000589347 CCDC88BA6NC98 1476 aa19.36■□□□□ 0.69
CLPTM1-211ENST00000589347 ZNF608Q9ULD9 1512 aaPredicted RBP19.32■□□□□ 0.68
CLPTM1-211ENST00000589347 IFT140Q96RY7 1462 aa19.3■□□□□ 0.68
CLPTM1-211ENST00000589347 ARAP1Q96P48 1450 aa19.25■□□□□ 0.67
CLPTM1-211ENST00000589347 EIF4G3O43432 1585 aaKnown RBP19.23■□□□□ 0.67
CLPTM1-211ENST00000589347 CYB5RLQ6IPT4 315 aa19.2■□□□□ 0.66
CLPTM1-211ENST00000589347 TOPBP1Q92547 1522 aa19.17■□□□□ 0.66
CLPTM1-211ENST00000589347 CHD1O14646 1710 aa19.17■□□□□ 0.66
CLPTM1-211ENST00000589347 TRHP20396 242 aaPredicted RBP19.14■□□□□ 0.65
CLPTM1-211ENST00000589347 ABCC8Q09428 1581 aa19.14■□□□□ 0.65
CLPTM1-211ENST00000589347 DNMBPQ6XZF7 1577 aa19.12■□□□□ 0.65
CLPTM1-211ENST00000589347 TARBP1Q13395 1621 aaKnown RBP19.08■□□□□ 0.65
CLPTM1-211ENST00000589347 AQRO60306 1485 aaKnown RBP eCLIP19.03■□□□□ 0.643e-6■■■■□ 24.7
CLPTM1-211ENST00000589347 SUPT5HO00267 1087 aaKnown RBP19.02■□□□□ 0.64
CLPTM1-211ENST00000589347 AEBP2Q6ZN18 517 aaPredicted RBP19■□□□□ 0.63
CLPTM1-211ENST00000589347 CLASP1Q7Z460 1538 aa19■□□□□ 0.63
CLPTM1-211ENST00000589347 POLA1P09884 1462 aaPredicted RBP18.94■□□□□ 0.62
CLPTM1-211ENST00000589347 WDR97A6NE52 1622 aa18.9■□□□□ 0.62
CLPTM1-211ENST00000589347 FBLN2P98095 1184 aa18.89■□□□□ 0.61
CLPTM1-211ENST00000589347 SYNJ1O43426 1573 aa18.86■□□□□ 0.61
CLPTM1-211ENST00000589347 CUX1P39880 1505 aa18.86■□□□□ 0.61
CLPTM1-211ENST00000589347 SNAPC4Q5SXM2 1469 aa18.86■□□□□ 0.61
CLPTM1-211ENST00000589347 FGD5Q6ZNL6 1462 aa18.84■□□□□ 0.61
CLPTM1-211ENST00000589347 RAD54L2Q9Y4B4 1467 aa18.83■□□□□ 0.6
CLPTM1-211ENST00000589347 MAGI1Q96QZ7 1491 aaPredicted RBP18.82■□□□□ 0.6
CLPTM1-211ENST00000589347 TDRD9Q8NDG6 1382 aaKnown RBP18.8■□□□□ 0.6
CLPTM1-211ENST00000589347 SOGA1O94964 1423 aa18.78■□□□□ 0.6
CLPTM1-211ENST00000589347 BIVM-ERCC5R4GMW8 1640 aa18.77■□□□□ 0.6
CLPTM1-211ENST00000589347 PBRM1Q86U86 1689 aa18.76■□□□□ 0.59
CLPTM1-211ENST00000589347 GAPVD1Q14C86 1478 aa18.76■□□□□ 0.59
CLPTM1-211ENST00000589347 SYNJ2O15056 1496 aa18.75■□□□□ 0.59
CLPTM1-211ENST00000589347 GRIN2BQ13224 1484 aa18.72■□□□□ 0.59
CLPTM1-211ENST00000589347 TOP2BQ02880 1626 aa18.72■□□□□ 0.59
CLPTM1-211ENST00000589347 CHMP7Q8WUX9 453 aaPredicted RBP18.7■□□□□ 0.58
CLPTM1-211ENST00000589347 ABCA5Q8WWZ7 1642 aa18.67■□□□□ 0.58
CLPTM1-211ENST00000589347 ABCA10Q8WWZ4 1543 aa18.66■□□□□ 0.58
CLPTM1-211ENST00000589347 WRNQ14191 1432 aaPredicted RBP eCLIP18.66■□□□□ 0.58
CLPTM1-211ENST00000589347 ERCC6L2Q5T890 1561 aa18.59■□□□□ 0.57
CLPTM1-211ENST00000589347 KIF13AQ9H1H9 1805 aa18.55■□□□□ 0.56
CLPTM1-211ENST00000589347 CEP170Q5SW79 1584 aa18.52■□□□□ 0.56
CLPTM1-211ENST00000589347 ADAMTS12P58397 1594 aa18.51■□□□□ 0.55
CLPTM1-211ENST00000589347 SHROOM2Q13796 1616 aa18.51■□□□□ 0.55
CLPTM1-211ENST00000589347 GRIN2AQ12879 1464 aa18.51■□□□□ 0.55
CLPTM1-211ENST00000589347 NUP160Q12769 1436 aa18.49■□□□□ 0.55
CLPTM1-211ENST00000589347 ERICH3Q5RHP9 1530 aa18.48■□□□□ 0.55
CLPTM1-211ENST00000589347 FHAD1B1AJZ9 1412 aa18.39■□□□□ 0.53
CLPTM1-211ENST00000589347 CUL7Q14999 1698 aa18.36■□□□□ 0.53
CLPTM1-211ENST00000589347 ABCC10Q5T3U5 1492 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms