RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 PELP1Q8IZL8 1130 aaKnown RBP21.82■■□□□ 1.08
USP3-203ENST00000538686 NISCHQ9Y2I1 1504 aa21.44■■□□□ 1.02
USP3-203ENST00000538686 MYT1Q01538 1121 aa21.35■■□□□ 1.01
USP3-203ENST00000538686 HRCP23327 699 aa21.16■□□□□ 0.98
USP3-203ENST00000538686 TTBK1Q5TCY1 1321 aaPredicted RBP20.32■□□□□ 0.84
USP3-203ENST00000538686 PPARGC1BQ86YN6 1023 aaKnown RBP20.28■□□□□ 0.84
USP3-203ENST00000538686 SCAF1Q9H7N4 1312 aaKnown RBP20.23■□□□□ 0.83
USP3-203ENST00000538686 PCGF6Q9BYE7 350 aa20.15■□□□□ 0.82
USP3-203ENST00000538686 ZEB1P37275 1124 aaPredicted RBP19.89■□□□□ 0.77
USP3-203ENST00000538686 DCAF1Q9Y4B6 1507 aa19.85■□□□□ 0.77
USP3-203ENST00000538686 MYO15BQ96JP2 1530 aa19.82■□□□□ 0.76
USP3-203ENST00000538686 CCDC180Q9P1Z9 1646 aa19.74■□□□□ 0.75
USP3-203ENST00000538686 ACIN1Q9UKV3 1341 aaKnown RBP19.68■□□□□ 0.74
USP3-203ENST00000538686 TRIM26Q12899 539 aaPredicted RBP19.6■□□□□ 0.73
USP3-203ENST00000538686 CENPBP07199 599 aaPredicted RBP19.48■□□□□ 0.71
USP3-203ENST00000538686 CHIC1Q5VXU3 224 aa19.47■□□□□ 0.71
USP3-203ENST00000538686 NEUROD1Q13562 356 aa19.42■□□□□ 0.7
USP3-203ENST00000538686 GTF3C3Q9Y5Q9 886 aa19.42■□□□□ 0.7
USP3-203ENST00000538686 BCL11AQ9H165 835 aa19.34■□□□□ 0.69
USP3-203ENST00000538686 SUPT5HO00267 1087 aaKnown RBP19.33■□□□□ 0.69
USP3-203ENST00000538686 PRKCSHP14314 528 aaPredicted RBP19.09■□□□□ 0.65
USP3-203ENST00000538686 ERICH6Q7L0X2 663 aa19.07■□□□□ 0.64
USP3-203ENST00000538686 SHROOM4Q9ULL8 1493 aa19.06■□□□□ 0.64
USP3-203ENST00000538686 FAM9AQ8IZU1 332 aaPredicted RBP19.05■□□□□ 0.64
USP3-203ENST00000538686 ANP32EQ9BTT0 268 aa19■□□□□ 0.63
USP3-203ENST00000538686 DIEXFQ68CQ4 756 aaKnown RBP18.93■□□□□ 0.62
USP3-203ENST00000538686 LOC105371045A0A1W2PR82 267 aa18.85■□□□□ 0.61
USP3-203ENST00000538686 CLSPNQ9HAW4 1339 aa18.83■□□□□ 0.61
USP3-203ENST00000538686 APLP2Q06481 763 aa18.74■□□□□ 0.59
USP3-203ENST00000538686 TRIM41Q8WV44 630 aa18.62■□□□□ 0.57
USP3-203ENST00000538686 CSRNP3Q8WYN3 585 aa18.62■□□□□ 0.57
USP3-203ENST00000538686 CCER1Q8TC90 406 aaPredicted RBP18.54■□□□□ 0.56
USP3-203ENST00000538686 TSHZ2Q9NRE2 1034 aa18.49■□□□□ 0.55
USP3-203ENST00000538686 ZNF316A6NFI3 1004 aaPredicted RBP18.46■□□□□ 0.55
USP3-203ENST00000538686 YTHDC1Q96MU7 727 aaKnown RBP18.44■□□□□ 0.54
USP3-203ENST00000538686 ZCCHC6Q5VYS8 1495 aaKnown RBP18.41■□□□□ 0.54
USP3-203ENST00000538686 SUPT16HQ9Y5B9 1047 aaKnown RBP18.4■□□□□ 0.54
USP3-203ENST00000538686 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.39■□□□□ 0.53
USP3-203ENST00000538686 MYT1LQ9UL68 1186 aa18.29■□□□□ 0.52
USP3-203ENST00000538686 MIER1Q8N108 512 aa18.26■□□□□ 0.51
USP3-203ENST00000538686 ERICH6BQ5W0A0 696 aa18.03■□□□□ 0.48
USP3-203ENST00000538686 RBM19Q9Y4C8 960 aaKnown RBP18■□□□□ 0.47
USP3-203ENST00000538686 UBE2Q2Q8WVN8 375 aa17.94■□□□□ 0.46
USP3-203ENST00000538686 ANO8Q9HCE9 1232 aaPredicted RBP17.91■□□□□ 0.46
USP3-203ENST00000538686 FANCIQ9NVI1 1328 aa17.9■□□□□ 0.46
USP3-203ENST00000538686 WRNQ14191 1432 aaPredicted RBP eCLIP17.87■□□□□ 0.45
USP3-203ENST00000538686 MSH5O43196 834 aa17.82■□□□□ 0.44
USP3-203ENST00000538686 DEKP35659 375 aaKnown RBP17.82■□□□□ 0.44
USP3-203ENST00000538686 NEFLP07196 543 aa17.72■□□□□ 0.43
USP3-203ENST00000538686 FKBP8Q14318 412 aa17.7■□□□□ 0.42
USP3-203ENST00000538686 SALL2Q9Y467 1007 aaPredicted RBP17.67■□□□□ 0.42
USP3-203ENST00000538686 BCANQ96GW7 911 aa17.66■□□□□ 0.42
USP3-203ENST00000538686 ABCC9O60706 1549 aa17.65■□□□□ 0.42
USP3-203ENST00000538686 EIF5BO60841 1220 aaKnown RBP17.6■□□□□ 0.41
USP3-203ENST00000538686 CDK11AQ9UQ88 783 aaPredicted RBP17.55■□□□□ 0.4
USP3-203ENST00000538686 RB1CC1Q8TDY2 1594 aa17.54■□□□□ 0.4
USP3-203ENST00000538686 SLC24A1O60721 1099 aa17.53■□□□□ 0.4
USP3-203ENST00000538686 EHMT2Q96KQ7 1210 aa17.51■□□□□ 0.39
USP3-203ENST00000538686 CCDC136Q96JN2 1154 aa17.46■□□□□ 0.39
USP3-203ENST00000538686 CEP162Q5TB80 1403 aa17.44■□□□□ 0.38
USP3-203ENST00000538686 RSF1Q96T23 1441 aaPredicted RBP17.43■□□□□ 0.38
USP3-203ENST00000538686 PKNOX2Q96KN3 472 aa17.41■□□□□ 0.38
USP3-203ENST00000538686 ITGAEP38570 1179 aa17.4■□□□□ 0.38
USP3-203ENST00000538686 NOP58Q9Y2X3 529 aaKnown RBP17.4■□□□□ 0.38
USP3-203ENST00000538686 RTL5Q5HYW3 569 aaPredicted RBP17.38■□□□□ 0.37
USP3-203ENST00000538686 DAXXQ9UER7 740 aaPredicted RBP17.38■□□□□ 0.37
USP3-203ENST00000538686 TNIKQ9UKE5 1360 aa17.36■□□□□ 0.37
USP3-203ENST00000538686 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.3■□□□□ 0.36
USP3-203ENST00000538686 IL27Q8NEV9 243 aa17.29■□□□□ 0.36
USP3-203ENST00000538686 DCAF8L2P0C7V8 631 aa17.28■□□□□ 0.36
USP3-203ENST00000538686 HNRNPUL2Q1KMD3 747 aaKnown RBP17.28■□□□□ 0.36
USP3-203ENST00000538686 NBR1Q14596 966 aa17.27■□□□□ 0.36
USP3-203ENST00000538686 C11orf95C9JLR9 678 aaPredicted RBP17.27■□□□□ 0.35
USP3-203ENST00000538686 CCER2I3L3R5 266 aa17.27■□□□□ 0.35
USP3-203ENST00000538686 KCNH8Q96L42 1107 aa17.24■□□□□ 0.35
USP3-203ENST00000538686 GLIPR1L2Q4G1C9 344 aa17.23■□□□□ 0.35
USP3-203ENST00000538686 DHX57Q6P158 1386 aaKnown RBP17.22■□□□□ 0.35
USP3-203ENST00000538686 USP35Q9P2H5 1018 aa17.18■□□□□ 0.34
USP3-203ENST00000538686 RTN4Q9NQC3 1192 aaKnown RBP17.17■□□□□ 0.34
USP3-203ENST00000538686 WASHC2AQ641Q2 1341 aa17.17■□□□□ 0.34
USP3-203ENST00000538686 PPP4R2Q9NY27 417 aa17.17■□□□□ 0.34
USP3-203ENST00000538686 EEA1Q15075 1411 aa17.16■□□□□ 0.34
USP3-203ENST00000538686 RSPH6AQ9H0K4 717 aa17.15■□□□□ 0.34
USP3-203ENST00000538686 WASHC2CQ9Y4E1 1318 aa17.12■□□□□ 0.33
USP3-203ENST00000538686 ANP32AP39687 249 aaKnown RBP17.12■□□□□ 0.33
USP3-203ENST00000538686 PAK3O75914 559 aaPredicted RBP17.11■□□□□ 0.33
USP3-203ENST00000538686 IPO9Q96P70 1041 aaKnown RBP17.11■□□□□ 0.33
USP3-203ENST00000538686 PODXL2Q9NZ53 605 aa17.08■□□□□ 0.33
USP3-203ENST00000538686 ZBTB47Q9UFB7 747 aaPredicted RBP17.08■□□□□ 0.33
USP3-203ENST00000538686 NACADO15069 1562 aa17.08■□□□□ 0.32
USP3-203ENST00000538686 TRIM52Q96A61 297 aa17.07■□□□□ 0.32
USP3-203ENST00000538686 EIF4G1Q04637 1599 aaKnown RBP17.06■□□□□ 0.32
USP3-203ENST00000538686 GOLGA3Q08378 1498 aa17.04■□□□□ 0.32
USP3-203ENST00000538686 ANP32CO43423 234 aa17.04■□□□□ 0.32
USP3-203ENST00000538686 PPP1R15AO75807 674 aaPredicted RBP17■□□□□ 0.31
USP3-203ENST00000538686 CUX2O14529 1486 aa16.98■□□□□ 0.31
USP3-203ENST00000538686 VPS8Q8N3P4 1428 aa16.98■□□□□ 0.31
USP3-203ENST00000538686 DDX10Q13206 875 aaKnown RBP16.97■□□□□ 0.31
USP3-203ENST00000538686 PPM1GO15355 546 aaPredicted RBP16.94■□□□□ 0.3
USP3-203ENST00000538686 UBTFP17480 764 aaKnown RBP16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms