RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 NISCHQ9Y2I1 1504 aa23.57■■□□□ 1.36
USP3-219ENST00000561326 CCDC180Q9P1Z9 1646 aa20.71■□□□□ 0.91
USP3-219ENST00000561326 ZCCHC6Q5VYS8 1495 aaKnown RBP19.73■□□□□ 0.75
USP3-219ENST00000561326 ABCC9O60706 1549 aa19.65■□□□□ 0.74
USP3-219ENST00000561326 DCAF8L2P0C7V8 631 aa19.58■□□□□ 0.72
USP3-219ENST00000561326 DCAF1Q9Y4B6 1507 aa19.53■□□□□ 0.72
USP3-219ENST00000561326 MYO15BQ96JP2 1530 aa19.38■□□□□ 0.69
USP3-219ENST00000561326 NACADO15069 1562 aa19.32■□□□□ 0.68
USP3-219ENST00000561326 RB1CC1Q8TDY2 1594 aa19.21■□□□□ 0.67
USP3-219ENST00000561326 SHROOM4Q9ULL8 1493 aa19.04■□□□□ 0.64
USP3-219ENST00000561326 SCRIBQ14160 1630 aa18.92■□□□□ 0.62
USP3-219ENST00000561326 UNC13AQ9UPW8 1703 aa18.8■□□□□ 0.6
USP3-219ENST00000561326 BICRAQ9NZM4 1560 aa18.53■□□□□ 0.56
USP3-219ENST00000561326 PABPN1Q86U42 306 aaKnown RBP eCLIP18.5■□□□□ 0.55
USP3-219ENST00000561326 SUPT5HO00267 1087 aaKnown RBP18.3■□□□□ 0.52
USP3-219ENST00000561326 CECR2Q9BXF3 1484 aa18.26■□□□□ 0.51
USP3-219ENST00000561326 BAZ1AQ9NRL2 1556 aaPredicted RBP18.25■□□□□ 0.51
USP3-219ENST00000561326 RSF1Q96T23 1441 aaPredicted RBP18.19■□□□□ 0.5
USP3-219ENST00000561326 SMARCA4P51532 1647 aa18.16■□□□□ 0.5
USP3-219ENST00000561326 MROH2BQ7Z745 1585 aa18.16■□□□□ 0.5
USP3-219ENST00000561326 WIZO95785 1651 aa18.04■□□□□ 0.48
USP3-219ENST00000561326 EIF4G1Q04637 1599 aaKnown RBP18.02■□□□□ 0.48
USP3-219ENST00000561326 SMARCA2P51531 1590 aa17.95■□□□□ 0.46
USP3-219ENST00000561326 PEG3Q9GZU2 1588 aa17.95■□□□□ 0.46
USP3-219ENST00000561326 ATAD2BQ9ULI0 1458 aa17.88■□□□□ 0.45
USP3-219ENST00000561326 TOP2AP11388 1531 aaKnown RBP17.85■□□□□ 0.45
USP3-219ENST00000561326 BAZ1BQ9UIG0 1483 aaKnown RBP17.82■□□□□ 0.44
USP3-219ENST00000561326 CC2D2AQ9P2K1 1620 aa17.81■□□□□ 0.44
USP3-219ENST00000561326 NCAPD3P42695 1498 aa17.8■□□□□ 0.44
USP3-219ENST00000561326 HMGXB3Q12766 1538 aa17.76■□□□□ 0.43
USP3-219ENST00000561326 CCDC88BA6NC98 1476 aa17.66■□□□□ 0.42
USP3-219ENST00000561326 DNAJC5BQ9UF47 199 aa17.45■□□□□ 0.38
USP3-219ENST00000561326 CHIC1Q5VXU3 224 aa17.42■□□□□ 0.38
USP3-219ENST00000561326 PRDM2Q13029 1718 aa17.35■□□□□ 0.37
USP3-219ENST00000561326 CADPSQ9ULU8 1353 aa17.34■□□□□ 0.37
USP3-219ENST00000561326 CFTRP13569 1480 aa17.33■□□□□ 0.37
USP3-219ENST00000561326 TRIM41Q8WV44 630 aa17.28■□□□□ 0.36
USP3-219ENST00000561326 LAMC3Q9Y6N6 1575 aa17.26■□□□□ 0.35
USP3-219ENST00000561326 ABCC8Q09428 1581 aa17.19■□□□□ 0.34
USP3-219ENST00000561326 NESP48681 1621 aa17.17■□□□□ 0.34
USP3-219ENST00000561326 WRNQ14191 1432 aaPredicted RBP eCLIP17.16■□□□□ 0.34
USP3-219ENST00000561326 PDS5BQ9NTI5 1447 aa17.14■□□□□ 0.33
USP3-219ENST00000561326 FANCD2Q9BXW9 1451 aa17.12■□□□□ 0.33
USP3-219ENST00000561326 TOP2BQ02880 1626 aa17.06■□□□□ 0.32
USP3-219ENST00000561326 CEP164Q9UPV0 1460 aa17.05■□□□□ 0.32
USP3-219ENST00000561326 SYNJ1O43426 1573 aa17.05■□□□□ 0.32
USP3-219ENST00000561326 BIVM-ERCC5R4GMW8 1640 aa17.04■□□□□ 0.32
USP3-219ENST00000561326 KIF21AQ7Z4S6 1674 aa17.03■□□□□ 0.32
USP3-219ENST00000561326 CUX1P39880 1505 aa17.01■□□□□ 0.31
USP3-219ENST00000561326 DNMBPQ6XZF7 1577 aa16.96■□□□□ 0.31
USP3-219ENST00000561326 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
USP3-219ENST00000561326 TOPBP1Q92547 1522 aa16.91■□□□□ 0.3
USP3-219ENST00000561326 EEA1Q15075 1411 aa16.89■□□□□ 0.29
USP3-219ENST00000561326 FAM9AQ8IZU1 332 aaPredicted RBP16.89■□□□□ 0.29
USP3-219ENST00000561326 MRC2Q9UBG0 1479 aa16.88■□□□□ 0.29
USP3-219ENST00000561326 URB2Q14146 1524 aaKnown RBP16.88■□□□□ 0.29
USP3-219ENST00000561326 FGD5Q6ZNL6 1462 aa16.86■□□□□ 0.29
USP3-219ENST00000561326 SOGA1O94964 1423 aa16.83■□□□□ 0.28
USP3-219ENST00000561326 CSRNP3Q8WYN3 585 aa16.8■□□□□ 0.28
USP3-219ENST00000561326 POLA1P09884 1462 aaPredicted RBP16.8■□□□□ 0.28
USP3-219ENST00000561326 WDR62O43379 1518 aa16.78■□□□□ 0.28
USP3-219ENST00000561326 KIF27Q86VH2 1401 aa16.78■□□□□ 0.28
USP3-219ENST00000561326 RUSC2Q8N2Y8 1516 aa16.76■□□□□ 0.27
USP3-219ENST00000561326 THOC2Q8NI27 1593 aaKnown RBP16.75■□□□□ 0.27
USP3-219ENST00000561326 CUX2O14529 1486 aa16.73■□□□□ 0.27
USP3-219ENST00000561326 RAD54L2Q9Y4B4 1467 aa16.73■□□□□ 0.27
USP3-219ENST00000561326 ABCA10Q8WWZ4 1543 aa16.72■□□□□ 0.27
USP3-219ENST00000561326 LOC105371045A0A1W2PR82 267 aa16.72■□□□□ 0.27
USP3-219ENST00000561326 WDR97A6NE52 1622 aa16.68■□□□□ 0.26
USP3-219ENST00000561326 TARBP1Q13395 1621 aaKnown RBP16.68■□□□□ 0.26
USP3-219ENST00000561326 IFT140Q96RY7 1462 aa16.67■□□□□ 0.26
USP3-219ENST00000561326 KIF21BO75037 1637 aa16.63■□□□□ 0.25
USP3-219ENST00000561326 EHMT2Q96KQ7 1210 aa16.61■□□□□ 0.25
USP3-219ENST00000561326 IGF1RP08069 1367 aa16.61■□□□□ 0.25
USP3-219ENST00000561326 TDRD9Q8NDG6 1382 aaKnown RBP16.61■□□□□ 0.25
USP3-219ENST00000561326 GAPVD1Q14C86 1478 aa16.61■□□□□ 0.25
USP3-219ENST00000561326 GOLGA3Q08378 1498 aa16.6■□□□□ 0.25
USP3-219ENST00000561326 UBTFP17480 764 aaKnown RBP16.59■□□□□ 0.25
USP3-219ENST00000561326 ABCA5Q8WWZ7 1642 aa16.59■□□□□ 0.25
USP3-219ENST00000561326 ERICH3Q5RHP9 1530 aa16.56■□□□□ 0.24
USP3-219ENST00000561326 PRXQ9BXM0 1461 aa16.56■□□□□ 0.24
USP3-219ENST00000561326 CUL7Q14999 1698 aa16.56■□□□□ 0.24
USP3-219ENST00000561326 CARMIL1Q5VZK9 1371 aa16.55■□□□□ 0.24
USP3-219ENST00000561326 PBRM1Q86U86 1689 aa16.54■□□□□ 0.24
USP3-219ENST00000561326 AQRO60306 1485 aaKnown RBP eCLIP16.53■□□□□ 0.241e-6■■■■□ 20.3
USP3-219ENST00000561326 TNIKQ9UKE5 1360 aa16.51■□□□□ 0.23
USP3-219ENST00000561326 RAPGEF2Q9Y4G8 1499 aa16.51■□□□□ 0.23
USP3-219ENST00000561326 GRIN2BQ13224 1484 aa16.5■□□□□ 0.23
USP3-219ENST00000561326 ZNF608Q9ULD9 1512 aaPredicted RBP16.5■□□□□ 0.23
USP3-219ENST00000561326 EIF4G3O43432 1585 aaKnown RBP16.47■□□□□ 0.23
USP3-219ENST00000561326 FHAD1B1AJZ9 1412 aa16.43■□□□□ 0.22
USP3-219ENST00000561326 MAGI1Q96QZ7 1491 aaPredicted RBP16.39■□□□□ 0.21
USP3-219ENST00000561326 ADAMTS12P58397 1594 aa16.38■□□□□ 0.21
USP3-219ENST00000561326 CEP162Q5TB80 1403 aa16.37■□□□□ 0.21
USP3-219ENST00000561326 SNAPC4Q5SXM2 1469 aa16.36■□□□□ 0.21
USP3-219ENST00000561326 CTTNBP2Q8WZ74 1663 aa16.36■□□□□ 0.21
USP3-219ENST00000561326 CHMP7Q8WUX9 453 aaPredicted RBP16.34■□□□□ 0.21
USP3-219ENST00000561326 CLIP1P30622 1438 aa16.32■□□□□ 0.2
USP3-219ENST00000561326 SYNJ2O15056 1496 aa16.31■□□□□ 0.2
USP3-219ENST00000561326 RANGAP1P46060 587 aaPredicted RBP16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms