RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 NISCHQ9Y2I1 1504 aa12.56□□□□□ -0.4
USP3-210ENST00000559192 SUPT5HO00267 1087 aaKnown RBP11.96□□□□□ -0.5
USP3-210ENST00000559192 SHROOM4Q9ULL8 1493 aa11.91□□□□□ -0.5
USP3-210ENST00000559192 DCAF8L2P0C7V8 631 aa11.91□□□□□ -0.5
USP3-210ENST00000559192 PCGF6Q9BYE7 350 aa11.56□□□□□ -0.56
USP3-210ENST00000559192 EHMT2Q96KQ7 1210 aa11.44□□□□□ -0.58
USP3-210ENST00000559192 HRCP23327 699 aa11.32□□□□□ -0.6
USP3-210ENST00000559192 PELP1Q8IZL8 1130 aaKnown RBP11.32□□□□□ -0.6
USP3-210ENST00000559192 MYT1Q01538 1121 aa11.24□□□□□ -0.61
USP3-210ENST00000559192 PPARGC1BQ86YN6 1023 aaKnown RBP11.23□□□□□ -0.61
USP3-210ENST00000559192 FAM9AQ8IZU1 332 aaPredicted RBP11.21□□□□□ -0.62
USP3-210ENST00000559192 TTBK1Q5TCY1 1321 aaPredicted RBP11.1□□□□□ -0.63
USP3-210ENST00000559192 CHIC1Q5VXU3 224 aa11.09□□□□□ -0.63
USP3-210ENST00000559192 ZEB1P37275 1124 aaPredicted RBP11.07□□□□□ -0.64
USP3-210ENST00000559192 LOC105371045A0A1W2PR82 267 aa11.07□□□□□ -0.64
USP3-210ENST00000559192 TRIM26Q12899 539 aaPredicted RBP11.03□□□□□ -0.64
USP3-210ENST00000559192 TRIM41Q8WV44 630 aa10.99□□□□□ -0.65
USP3-210ENST00000559192 CCER1Q8TC90 406 aaPredicted RBP10.98□□□□□ -0.65
USP3-210ENST00000559192 CENPBP07199 599 aaPredicted RBP10.94□□□□□ -0.66
USP3-210ENST00000559192 ERICH6Q7L0X2 663 aa10.94□□□□□ -0.66
USP3-210ENST00000559192 YTHDC1Q96MU7 727 aaKnown RBP10.89□□□□□ -0.67
USP3-210ENST00000559192 MYO15BQ96JP2 1530 aa10.77□□□□□ -0.68
USP3-210ENST00000559192 APLP2Q06481 763 aa10.76□□□□□ -0.69
USP3-210ENST00000559192 RANGAP1P46060 587 aaPredicted RBP10.74□□□□□ -0.69
USP3-210ENST00000559192 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.73□□□□□ -0.69
USP3-210ENST00000559192 UBTFP17480 764 aaKnown RBP10.67□□□□□ -0.7
USP3-210ENST00000559192 DIEXFQ68CQ4 756 aaKnown RBP10.65□□□□□ -0.7
USP3-210ENST00000559192 GTF3C3Q9Y5Q9 886 aa10.64□□□□□ -0.71
USP3-210ENST00000559192 DCAF1Q9Y4B6 1507 aa10.62□□□□□ -0.71
USP3-210ENST00000559192 SCAF1Q9H7N4 1312 aaKnown RBP10.59□□□□□ -0.71
USP3-210ENST00000559192 ACIN1Q9UKV3 1341 aaKnown RBP10.56□□□□□ -0.72
USP3-210ENST00000559192 ZCCHC6Q5VYS8 1495 aaKnown RBP10.55□□□□□ -0.72
USP3-210ENST00000559192 HNRNPUL2Q1KMD3 747 aaKnown RBP10.54□□□□□ -0.72
USP3-210ENST00000559192 NEUROD1Q13562 356 aa10.46□□□□□ -0.74
USP3-210ENST00000559192 CCDC180Q9P1Z9 1646 aa10.42□□□□□ -0.74
USP3-210ENST00000559192 NEFLP07196 543 aa10.42□□□□□ -0.74
USP3-210ENST00000559192 ITGAEP38570 1179 aa10.39□□□□□ -0.75
USP3-210ENST00000559192 ATP1B4Q9UN42 357 aaPredicted RBP10.39□□□□□ -0.75
USP3-210ENST00000559192 ZNF316A6NFI3 1004 aaPredicted RBP10.39□□□□□ -0.75
USP3-210ENST00000559192 BCANQ96GW7 911 aa10.33□□□□□ -0.76
USP3-210ENST00000559192 SCRIBQ14160 1630 aa10.3□□□□□ -0.76
USP3-210ENST00000559192 MIER1Q8N108 512 aa10.21□□□□□ -0.78
USP3-210ENST00000559192 DAXXQ9UER7 740 aaPredicted RBP10.2□□□□□ -0.78
USP3-210ENST00000559192 ABCC9O60706 1549 aa10.18□□□□□ -0.78
USP3-210ENST00000559192 RTL5Q5HYW3 569 aaPredicted RBP10.18□□□□□ -0.78
USP3-210ENST00000559192 RSF1Q96T23 1441 aaPredicted RBP10.15□□□□□ -0.79
USP3-210ENST00000559192 CSRNP3Q8WYN3 585 aa10.14□□□□□ -0.79
USP3-210ENST00000559192 CNGB1Q14028 1251 aaPredicted RBP10.13□□□□□ -0.79
USP3-210ENST00000559192 FAM50AQ14320 339 aaKnown RBP10.11□□□□□ -0.79
USP3-210ENST00000559192 POLR3GLQ9BT43 218 aa10.08□□□□□ -0.8
USP3-210ENST00000559192 FKBP8Q14318 412 aa10.08□□□□□ -0.8
USP3-210ENST00000559192 PABPN1Q86U42 306 aaKnown RBP eCLIP10.08□□□□□ -0.8
USP3-210ENST00000559192 CEP162Q5TB80 1403 aa10.06□□□□□ -0.8
USP3-210ENST00000559192 RB1CC1Q8TDY2 1594 aa10.05□□□□□ -0.8
USP3-210ENST00000559192 ANP32CO43423 234 aa10.04□□□□□ -0.8
USP3-210ENST00000559192 CDK11AQ9UQ88 783 aaPredicted RBP10.01□□□□□ -0.81
USP3-210ENST00000559192 CLSPNQ9HAW4 1339 aa10.01□□□□□ -0.81
USP3-210ENST00000559192 EIF5BO60841 1220 aaKnown RBP9.99□□□□□ -0.81
USP3-210ENST00000559192 DDX10Q13206 875 aaKnown RBP9.99□□□□□ -0.81
USP3-210ENST00000559192 TRIM52Q96A61 297 aa9.96□□□□□ -0.81
USP3-210ENST00000559192 SUPT16HQ9Y5B9 1047 aaKnown RBP9.96□□□□□ -0.81
USP3-210ENST00000559192 ANP32EQ9BTT0 268 aa9.94□□□□□ -0.82
USP3-210ENST00000559192 CLIP1P30622 1438 aa9.93□□□□□ -0.82
USP3-210ENST00000559192 GLIPR1L2Q4G1C9 344 aa9.93□□□□□ -0.82
USP3-210ENST00000559192 HIRIP3Q9BW71 556 aaPredicted RBP9.93□□□□□ -0.82
USP3-210ENST00000559192 P3H3Q8IVL6 736 aa9.93□□□□□ -0.82
USP3-210ENST00000559192 GOLGA3Q08378 1498 aa9.92□□□□□ -0.82
USP3-210ENST00000559192 CECR2Q9BXF3 1484 aa9.92□□□□□ -0.82
USP3-210ENST00000559192 TNIKQ9UKE5 1360 aa9.91□□□□□ -0.82
USP3-210ENST00000559192 IRX6P78412 446 aaPredicted RBP9.91□□□□□ -0.82
USP3-210ENST00000559192 SOGA1O94964 1423 aa9.89□□□□□ -0.83
USP3-210ENST00000559192 HNRNPUQ00839 825 aaKnown RBP eCLIP9.88□□□□□ -0.83
USP3-210ENST00000559192 ABCC8Q09428 1581 aa9.88□□□□□ -0.83
USP3-210ENST00000559192 MROH2BQ7Z745 1585 aa9.84□□□□□ -0.83
USP3-210ENST00000559192 NBR1Q14596 966 aa9.83□□□□□ -0.84
USP3-210ENST00000559192 ZNF326Q5BKZ1 582 aaKnown RBP9.83□□□□□ -0.84
USP3-210ENST00000559192 CCDC88BA6NC98 1476 aa9.83□□□□□ -0.84
USP3-210ENST00000559192 EEA1Q15075 1411 aa9.82□□□□□ -0.84
USP3-210ENST00000559192 TONSLQ96HA7 1378 aa9.82□□□□□ -0.84
USP3-210ENST00000559192 NPM2Q86SE8 214 aaKnown RBP9.81□□□□□ -0.84
USP3-210ENST00000559192 FAM9BQ8IZU0 186 aa9.81□□□□□ -0.84
USP3-210ENST00000559192 BCL11AQ9H165 835 aa9.81□□□□□ -0.84
USP3-210ENST00000559192 WIZO95785 1651 aa9.8□□□□□ -0.84
USP3-210ENST00000559192 TSHZ2Q9NRE2 1034 aa9.8□□□□□ -0.84
USP3-210ENST00000559192 WRNQ14191 1432 aaPredicted RBP eCLIP9.8□□□□□ -0.84
USP3-210ENST00000559192 ANP32AP39687 249 aaKnown RBP9.79□□□□□ -0.84
USP3-210ENST00000559192 CEP164Q9UPV0 1460 aa9.79□□□□□ -0.84
USP3-210ENST00000559192 ARID3CA6NKF2 412 aa9.77□□□□□ -0.84
USP3-210ENST00000559192 SIN3AQ96ST3 1273 aa9.76□□□□□ -0.85
USP3-210ENST00000559192 RBM19Q9Y4C8 960 aaKnown RBP9.73□□□□□ -0.85
USP3-210ENST00000559192 BAZ1AQ9NRL2 1556 aaPredicted RBP9.73□□□□□ -0.85
USP3-210ENST00000559192 KCNH8Q96L42 1107 aa9.72□□□□□ -0.85
USP3-210ENST00000559192 NACADO15069 1562 aa9.72□□□□□ -0.85
USP3-210ENST00000559192 SENP3-EIF4A1A0A087X0R7 540 aa9.71□□□□□ -0.86
USP3-210ENST00000559192 VPS8Q8N3P4 1428 aa9.71□□□□□ -0.86
USP3-210ENST00000559192 CHIC2Q9UKJ5 165 aa9.7□□□□□ -0.86
USP3-210ENST00000559192 RUSC2Q8N2Y8 1516 aa9.7□□□□□ -0.86
USP3-210ENST00000559192 KANK4Q5T7N3 995 aaPredicted RBP9.7□□□□□ -0.86
USP3-210ENST00000559192 MRS2Q9HD23 443 aa9.69□□□□□ -0.86
USP3-210ENST00000559192 CCDC136Q96JN2 1154 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms