Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC19.13■□□□□ 0.658e-7■■■□□ 17.1
YBX3P16989 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC17.53■□□□□ 0.48e-7■■■□□ 17.1
YBX3P16989 CYB5R3-208ENST00000470741 3938 ntTSL 1 (best)13.91□□□□□ -0.188e-7■■■□□ 17.1
YBX3P16989 CYB5R3-202ENST00000361740 2938 ntTSL 2 BASIC12□□□□□ -0.498e-7■■■□□ 17.1
YBX3P16989 SUSD1-205ENST00000415074 842 ntTSL 312.18□□□□□ -0.462e-12■■■□□ 17.1
YBX3P16989 SUSD1-207ENST00000482851 672 ntTSL 311.87□□□□□ -0.512e-12■■■□□ 17.1
YBX3P16989 SUSD1-210ENST00000532348 526 ntTSL 35.31□□□□□ -1.562e-12■■■□□ 17.1
YBX3P16989 PFKFB4-208ENST00000452531 1011 ntTSL 523.41■■□□□ 1.342e-6■■■□□ 17.1
YBX3P16989 SRCAP-205ENST00000483083 5937 ntTSL 210.78□□□□□ -0.681e-6■■■□□ 17.1
YBX3P16989 PDIK1L-203ENST00000444713 838 ntTSL 316.31■□□□□ 0.22e-6■■■□□ 17.1
YBX3P16989 PDIK1L-204ENST00000619836 4252 ntAPPRIS P1 TSL 3 BASIC12.32□□□□□ -0.442e-6■■■□□ 17.1
YBX3P16989 PDIK1L-201ENST00000374269 2566 ntAPPRIS P1 TSL 1 (best) BASIC9.15□□□□□ -0.952e-6■■■□□ 17.1
YBX3P16989 PDIK1L-202ENST00000374271 4279 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.082e-6■■■□□ 17.1
YBX3P16989 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.491e-6■■■□□ 17.1
YBX3P16989 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.021e-6■■■□□ 17.1
YBX3P16989 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.64□□□□□ -0.071e-6■■■□□ 17.1
YBX3P16989 UBE3A-204ENST00000438097 8939 ntAPPRIS P3 TSL 5 BASIC14.05□□□□□ -0.161e-6■■■□□ 17.1
YBX3P16989 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC13.85□□□□□ -0.191e-6■■■□□ 17.1
YBX3P16989 UBE3A-228ENST00000638155 9131 ntAPPRIS P3 TSL 5 BASIC13.01□□□□□ -0.331e-6■■■□□ 17.1
YBX3P16989 UBE3A-226ENST00000637886 8725 ntAPPRIS ALT1 TSL 5 BASIC12.95□□□□□ -0.341e-6■■■□□ 17.1
YBX3P16989 PUF60-220ENST00000532884 819 ntTSL 518.85■□□□□ 0.616e-9■■■□□ 17.1
YBX3P16989 PUF60-213ENST00000528999 431 ntTSL 311.27□□□□□ -0.616e-9■■■□□ 17.1
YBX3P16989 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.663e-7■■■□□ 17.1
YBX3P16989 IPO7-205ENST00000531235 283 ntTSL 38.9□□□□□ -0.981e-7■■■□□ 17.1
YBX3P16989 PAPOLA-220ENST00000556459 959 ntTSL 57.5□□□□□ -1.217e-7■■■□□ 17.1
YBX3P16989 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.027e-7■■■□□ 17.1
YBX3P16989 KCTD3-203ENST00000452413 589 ntTSL 312.53□□□□□ -0.47e-7■■■□□ 17.1
YBX3P16989 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC22.04■■□□□ 1.122e-7■■■□□ 17.1
YBX3P16989 TMEM106C-216ENST00000551305 1356 ntTSL 1 (best)20.64■□□□□ 0.892e-7■■■□□ 17.1
YBX3P16989 TMEM106C-209ENST00000548640 581 ntTSL 315.17■□□□□ 0.022e-7■■■□□ 17.1
YBX3P16989 TMEM106C-210ENST00000548965 326 ntTSL 311.21□□□□□ -0.612e-7■■■□□ 17.1
YBX3P16989 TMEM106C-212ENST00000549288 321 ntTSL 3 BASIC11.21□□□□□ -0.612e-7■■■□□ 17.1
YBX3P16989 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC8.44□□□□□ -1.062e-7■■■□□ 17.1
YBX3P16989 TMEM106C-213ENST00000550146 663 ntTSL 38.37□□□□□ -1.072e-7■■■□□ 17.1
YBX3P16989 TMEM106C-204ENST00000546749 579 ntTSL 37.21□□□□□ -1.262e-7■■■□□ 17.1
YBX3P16989 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.422e-7■■■□□ 17.1
YBX3P16989 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.662e-7■■■□□ 17
YBX3P16989 TSTA3-214ENST00000531473 2220 ntTSL 1 (best)22.96■■□□□ 1.272e-7■■■□□ 17
YBX3P16989 TSTA3-210ENST00000529064 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.022e-7■■■□□ 17
YBX3P16989 IPO7-208ENST00000630083 195 ntTSL 5 BASIC15.55■□□□□ 0.081e-7■■■□□ 17
YBX3P16989 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC34.5■■■■□ 3.114e-8■■■□□ 17
YBX3P16989 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.87■□□□□ 0.934e-8■■■□□ 17
YBX3P16989 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC20.28■□□□□ 0.844e-8■■■□□ 17
YBX3P16989 FKBP2-204ENST00000535135 639 ntTSL 332.34■■■□□ 2.773e-9■■■□□ 17
YBX3P16989 FKBP2-205ENST00000536642 637 ntTSL 226.47■■□□□ 1.833e-9■■■□□ 17
YBX3P16989 FKBP2-206ENST00000541388 705 ntTSL 526.03■■□□□ 1.763e-9■■■□□ 17
YBX3P16989 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.653e-9■■■□□ 17
YBX3P16989 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.953e-9■■■□□ 17
YBX3P16989 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.683e-9■■■□□ 17
YBX3P16989 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC25.73■■□□□ 1.712e-10■■■□□ 17
YBX3P16989 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.642e-10■■■□□ 17
YBX3P16989 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC22.23■■□□□ 1.152e-10■■■□□ 17
YBX3P16989 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.045e-8■■■□□ 17
YBX3P16989 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC17.34■□□□□ 0.375e-8■■■□□ 17
YBX3P16989 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.332e-7■■■□□ 17
YBX3P16989 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.212e-7■■■□□ 17
YBX3P16989 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.532e-7■■■□□ 17
YBX3P16989 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.572e-7■■■□□ 17
YBX3P16989 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.742e-7■■■□□ 17
YBX3P16989 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.12□□□□□ -1.596e-7■■■□□ 17
YBX3P16989 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.92□□□□□ -1.786e-7■■■□□ 17
YBX3P16989 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.876e-7■■■□□ 17
YBX3P16989 SF3B3-214ENST00000572365 575 ntTSL 47.78□□□□□ -1.164e-13■■■□□ 17
YBX3P16989 PLOD3-212ENST00000478082 1585 ntTSL 224.08■■□□□ 1.444e-6■■■□□ 17
YBX3P16989 PLOD3-202ENST00000414785 539 ntTSL 523.63■■□□□ 1.374e-6■■■□□ 17
YBX3P16989 PLOD3-216ENST00000489927 562 ntTSL 222.01■■□□□ 1.114e-6■■■□□ 17
YBX3P16989 PLOD3-207ENST00000456079 563 ntTSL 419.34■□□□□ 0.694e-6■■■□□ 17
YBX3P16989 COASY-212ENST00000591583 716 ntTSL 217.16■□□□□ 0.346e-7■■■□□ 17
YBX3P16989 TRAPPC1-206ENST00000573989 436 ntTSL 216.17■□□□□ 0.181e-9■■■□□ 17
YBX3P16989 NOP10-201ENST00000328848 554 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.94e-10■■■□□ 17
YBX3P16989 NOP10-202ENST00000557912 436 ntTSL 2 BASIC9.04□□□□□ -0.964e-10■■■□□ 17
YBX3P16989 UBE3A-211ENST00000626176 445 ntTSL 36.94□□□□□ -1.32e-6■■■□□ 17
YBX3P16989 UBE3A-206ENST00000604860 571 ntTSL 56.68□□□□□ -1.342e-6■■■□□ 17
YBX3P16989 PRKAG1-211ENST00000549726 1004 ntTSL 24.06□□□□□ -1.766e-8■■■□□ 17
YBX3P16989 GALNT10-206ENST00000519544 744 ntTSL 319.81■□□□□ 0.762e-6■■■□□ 17
YBX3P16989 GALNT10-203ENST00000425427 4344 ntTSL 2 BASIC18.45■□□□□ 0.542e-6■■■□□ 17
YBX3P16989 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.077e-8■■■□□ 17
YBX3P16989 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC17.6■□□□□ 0.419e-7■■■□□ 17
YBX3P16989 FTLP3-201ENST00000427242 528 ntBASIC16.91■□□□□ 0.37e-7■■■□□ 17
YBX3P16989 ORMDL2-204ENST00000550836 438 ntTSL 3 BASIC15.98■□□□□ 0.159e-7■■■□□ 17
YBX3P16989 ORMDL2-201ENST00000243045 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.3□□□□□ -0.289e-7■■■□□ 17
YBX3P16989 ORMDL2-203ENST00000548974 671 ntAPPRIS P1 TSL 2 BASIC10.16□□□□□ -0.789e-7■■■□□ 17
YBX3P16989 ORMDL2-202ENST00000546645 897 ntTSL 29.16□□□□□ -0.949e-7■■■□□ 17
YBX3P16989 ANKRD28-212ENST00000497037 3509 ntTSL 25.51□□□□□ -1.537e-8■■■□□ 17
YBX3P16989 ANKRD28-202ENST00000412318 4408 ntTSL 24.68□□□□□ -1.667e-8■■■□□ 17
YBX3P16989 ANKRD28-215ENST00000624145 6383 ntTSL 2 BASIC4.05□□□□□ -1.767e-8■■■□□ 17
YBX3P16989 CSNK1D-221ENST00000582844 957 ntTSL 528.62■■■□□ 2.172e-6■■■□□ 17
YBX3P16989 CSNK1D-213ENST00000580446 612 ntTSL 321.27■■□□□ 12e-6■■■□□ 17
YBX3P16989 CSNK1D-223ENST00000584472 586 ntTSL 420.72■□□□□ 0.912e-6■■■□□ 17
YBX3P16989 CSNK1D-219ENST00000581660 611 ntTSL 520.22■□□□□ 0.832e-6■■■□□ 17
YBX3P16989 CSNK1D-211ENST00000579316 692 ntTSL 220.22■□□□□ 0.832e-6■■■□□ 17
YBX3P16989 CSNK1D-212ENST00000580061 578 ntTSL 319.57■□□□□ 0.722e-6■■■□□ 17
YBX3P16989 CSNK1D-207ENST00000578194 567 ntTSL 416.2■□□□□ 0.182e-6■■■□□ 17
YBX3P16989 CSNK1D-226ENST00000585026 563 ntTSL 514.88□□□□□ -0.032e-6■■■□□ 17
YBX3P16989 LAMP1-203ENST00000472564 5242 ntTSL 217.57■□□□□ 0.41e-7■■■□□ 17
YBX3P16989 SNAP23-220ENST00000568841 632 ntTSL 310.37□□□□□ -0.752e-7■■■□□ 17
YBX3P16989 SNAP23-209ENST00000563873 368 ntTSL 38.15□□□□□ -1.12e-7■■■□□ 17
YBX3P16989 SNAP23-208ENST00000563830 570 ntTSL 56.88□□□□□ -1.312e-7■■■□□ 17
YBX3P16989 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC28.04■■■□□ 2.084e-8■■■□□ 17
YBX3P16989 FGFRL1-201ENST00000264748 3100 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.114e-8■■■□□ 17
Retrieved 100 of 29,075 protein–RNA pairs in 426.8 ms