RNA–Protein interactions for RNA: ENST00000361371.9

LTN1-201, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LTN1, Length 7,685 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-201ENST00000361371 NISCHQ9Y2I1 1504 aa6.39□□□□□ -1.39
LTN1-201ENST00000361371 DCAF8L2P0C7V8 631 aa5.54□□□□□ -1.52
LTN1-201ENST00000361371 SHROOM4Q9ULL8 1493 aa5.46□□□□□ -1.54
LTN1-201ENST00000361371 ABCC9O60706 1549 aa5.39□□□□□ -1.55
LTN1-201ENST00000361371 ZCCHC6Q5VYS8 1495 aaKnown RBP5.35□□□□□ -1.55
LTN1-201ENST00000361371 CCDC180Q9P1Z9 1646 aa5.32□□□□□ -1.56
LTN1-201ENST00000361371 SUPT5HO00267 1087 aaKnown RBP5.26□□□□□ -1.57
LTN1-201ENST00000361371 PABPN1Q86U42 306 aaKnown RBP eCLIP5.2□□□□□ -1.58
LTN1-201ENST00000361371 DCAF1Q9Y4B6 1507 aa5.16□□□□□ -1.58
LTN1-201ENST00000361371 SCRIBQ14160 1630 aa5.12□□□□□ -1.59
LTN1-201ENST00000361371 CECR2Q9BXF3 1484 aa5.1□□□□□ -1.59
LTN1-201ENST00000361371 MYO15BQ96JP2 1530 aa5.08□□□□□ -1.6
LTN1-201ENST00000361371 NACADO15069 1562 aa5.07□□□□□ -1.6
LTN1-201ENST00000361371 RSF1Q96T23 1441 aaPredicted RBP5.05□□□□□ -1.6
LTN1-201ENST00000361371 RB1CC1Q8TDY2 1594 aa5.04□□□□□ -1.6
LTN1-201ENST00000361371 MROH2BQ7Z745 1585 aa5□□□□□ -1.61
LTN1-201ENST00000361371 CHIC1Q5VXU3 224 aa4.99□□□□□ -1.61
LTN1-201ENST00000361371 DNAJC5BQ9UF47 199 aa4.98□□□□□ -1.61
LTN1-201ENST00000361371 BICRAQ9NZM4 1560 aa4.97□□□□□ -1.61
LTN1-201ENST00000361371 EHMT2Q96KQ7 1210 aa4.9□□□□□ -1.62
LTN1-201ENST00000361371 FAM9AQ8IZU1 332 aaPredicted RBP4.9□□□□□ -1.63
LTN1-201ENST00000361371 LOC105371045A0A1W2PR82 267 aa4.88□□□□□ -1.63
LTN1-201ENST00000361371 ATAD2BQ9ULI0 1458 aa4.87□□□□□ -1.63
LTN1-201ENST00000361371 WIZO95785 1651 aa4.87□□□□□ -1.63
LTN1-201ENST00000361371 BAZ1AQ9NRL2 1556 aaPredicted RBP4.87□□□□□ -1.63
LTN1-201ENST00000361371 TRIM41Q8WV44 630 aa4.85□□□□□ -1.63
LTN1-201ENST00000361371 CCDC88BA6NC98 1476 aa4.85□□□□□ -1.63
LTN1-201ENST00000361371 SMARCA4P51532 1647 aa4.84□□□□□ -1.64
LTN1-201ENST00000361371 EIF4G1Q04637 1599 aaKnown RBP4.81□□□□□ -1.64
LTN1-201ENST00000361371 UNC13AQ9UPW8 1703 aa4.81□□□□□ -1.64
LTN1-201ENST00000361371 BAZ1BQ9UIG0 1483 aaKnown RBP4.8□□□□□ -1.64
LTN1-201ENST00000361371 NCAPD3P42695 1498 aa4.8□□□□□ -1.64
LTN1-201ENST00000361371 TOP2AP11388 1531 aaKnown RBP4.79□□□□□ -1.64
LTN1-201ENST00000361371 SMARCA2P51531 1590 aa4.78□□□□□ -1.64
LTN1-201ENST00000361371 ABCC8Q09428 1581 aa4.76□□□□□ -1.65
LTN1-201ENST00000361371 SOGA1O94964 1423 aa4.75□□□□□ -1.65
LTN1-201ENST00000361371 RUSC2Q8N2Y8 1516 aa4.75□□□□□ -1.65
LTN1-201ENST00000361371 NESP48681 1621 aa4.74□□□□□ -1.65
LTN1-201ENST00000361371 PEG3Q9GZU2 1588 aa4.74□□□□□ -1.65
LTN1-201ENST00000361371 CC2D2AQ9P2K1 1620 aa4.73□□□□□ -1.65
LTN1-201ENST00000361371 CADPSQ9ULU8 1353 aa4.73□□□□□ -1.65
LTN1-201ENST00000361371 WRNQ14191 1432 aaPredicted RBP eCLIP4.72□□□□□ -1.65
LTN1-201ENST00000361371 RANGAP1P46060 587 aaPredicted RBP4.71□□□□□ -1.65
LTN1-201ENST00000361371 PPARGC1BQ86YN6 1023 aaKnown RBP4.71□□□□□ -1.66
LTN1-201ENST00000361371 CSRNP3Q8WYN3 585 aa4.7□□□□□ -1.66
LTN1-201ENST00000361371 CFTRP13569 1480 aa4.69□□□□□ -1.66
LTN1-201ENST00000361371 HMGXB3Q12766 1538 aa4.69□□□□□ -1.66
LTN1-201ENST00000361371 TTBK1Q5TCY1 1321 aaPredicted RBP4.66□□□□□ -1.66
LTN1-201ENST00000361371 UBTFP17480 764 aaKnown RBP4.66□□□□□ -1.66
LTN1-201ENST00000361371 SYNJ1O43426 1573 aa4.65□□□□□ -1.66
LTN1-201ENST00000361371 TDRD9Q8NDG6 1382 aaKnown RBP4.64□□□□□ -1.67
LTN1-201ENST00000361371 FANCD2Q9BXW9 1451 aa4.64□□□□□ -1.67
LTN1-201ENST00000361371 CUX1P39880 1505 aa4.64□□□□□ -1.67
LTN1-201ENST00000361371 RAD54L2Q9Y4B4 1467 aa4.64□□□□□ -1.67
LTN1-201ENST00000361371 IGF1RP08069 1367 aa4.62□□□□□ -1.67
LTN1-201ENST00000361371 PCGF6Q9BYE7 350 aa4.61□□□□□ -1.67
LTN1-201ENST00000361371 CUX2O14529 1486 aa4.6□□□□□ -1.67
LTN1-201ENST00000361371 URB2Q14146 1524 aaKnown RBP4.6□□□□□ -1.67
LTN1-201ENST00000361371 FGD5Q6ZNL6 1462 aa4.6□□□□□ -1.67
LTN1-201ENST00000361371 P3H3Q8IVL6 736 aa4.6□□□□□ -1.67
LTN1-201ENST00000361371 RAPGEF2Q9Y4G8 1499 aa4.6□□□□□ -1.67
LTN1-201ENST00000361371 PDS5BQ9NTI5 1447 aa4.59□□□□□ -1.68
LTN1-201ENST00000361371 POLA1P09884 1462 aaPredicted RBP4.58□□□□□ -1.68
LTN1-201ENST00000361371 AQRO60306 1485 aaKnown RBP eCLIP4.58□□□□□ -1.682e-6■■■■□ 20
LTN1-201ENST00000361371 TOPBP1Q92547 1522 aa4.58□□□□□ -1.68
LTN1-201ENST00000361371 CEP164Q9UPV0 1460 aa4.57□□□□□ -1.68
LTN1-201ENST00000361371 CEP162Q5TB80 1403 aa4.57□□□□□ -1.68
LTN1-201ENST00000361371 TNIKQ9UKE5 1360 aa4.57□□□□□ -1.68
LTN1-201ENST00000361371 KIF27Q86VH2 1401 aa4.56□□□□□ -1.68
LTN1-201ENST00000361371 CARMIL1Q5VZK9 1371 aa4.56□□□□□ -1.68
LTN1-201ENST00000361371 ZNF608Q9ULD9 1512 aaPredicted RBP4.56□□□□□ -1.68
LTN1-201ENST00000361371 PRXQ9BXM0 1461 aa4.56□□□□□ -1.68
LTN1-201ENST00000361371 TOP2BQ02880 1626 aa4.55□□□□□ -1.68
LTN1-201ENST00000361371 EEA1Q15075 1411 aa4.55□□□□□ -1.68
LTN1-201ENST00000361371 FBLN2P98095 1184 aa4.55□□□□□ -1.68
LTN1-201ENST00000361371 GOLGA3Q08378 1498 aa4.54□□□□□ -1.68
LTN1-201ENST00000361371 ARID3CA6NKF2 412 aa4.54□□□□□ -1.68
LTN1-201ENST00000361371 ERCC6Q03468 1493 aa4.53□□□□□ -1.68
LTN1-201ENST00000361371 KANK4Q5T7N3 995 aaPredicted RBP4.53□□□□□ -1.68
LTN1-201ENST00000361371 CLIP1P30622 1438 aa4.53□□□□□ -1.68
LTN1-201ENST00000361371 LAMC3Q9Y6N6 1575 aa4.52□□□□□ -1.69
LTN1-201ENST00000361371 ABCA10Q8WWZ4 1543 aa4.51□□□□□ -1.69
LTN1-201ENST00000361371 ATP1B4Q9UN42 357 aaPredicted RBP4.51□□□□□ -1.69
LTN1-201ENST00000361371 MRC2Q9UBG0 1479 aa4.51□□□□□ -1.69
LTN1-201ENST00000361371 DNMBPQ6XZF7 1577 aa4.5□□□□□ -1.69
LTN1-201ENST00000361371 ARAP1Q96P48 1450 aa4.5□□□□□ -1.69
LTN1-201ENST00000361371 GAPVD1Q14C86 1478 aa4.5□□□□□ -1.69
LTN1-201ENST00000361371 TRIM26Q12899 539 aaPredicted RBP4.49□□□□□ -1.69
LTN1-201ENST00000361371 BIVM-ERCC5R4GMW8 1640 aa4.49□□□□□ -1.69
LTN1-201ENST00000361371 FHOD3Q2V2M9 1422 aa4.48□□□□□ -1.69
LTN1-201ENST00000361371 CHMP7Q8WUX9 453 aaPredicted RBP4.48□□□□□ -1.69
LTN1-201ENST00000361371 HNRNPUL2Q1KMD3 747 aaKnown RBP4.47□□□□□ -1.69
LTN1-201ENST00000361371 ARHGAP35Q9NRY4 1499 aa4.47□□□□□ -1.69
LTN1-201ENST00000361371 KIF21BO75037 1637 aa4.47□□□□□ -1.69
LTN1-201ENST00000361371 VPS8Q8N3P4 1428 aa4.46□□□□□ -1.7
LTN1-201ENST00000361371 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.46□□□□□ -1.7
LTN1-201ENST00000361371 SNAPC4Q5SXM2 1469 aa4.45□□□□□ -1.7
LTN1-201ENST00000361371 IFT140Q96RY7 1462 aa4.45□□□□□ -1.7
LTN1-201ENST00000361371 ITGAEP38570 1179 aa4.45□□□□□ -1.7
LTN1-201ENST00000361371 KIF21AQ7Z4S6 1674 aa4.44□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms