RNA–Protein interactions for RNA: ENST00000638011.1

UBE3A-227, Transcript of ubiquitin protein ligase E3A, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene UBE3A, Length 8,742 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3A-227ENST00000638011 PELP1Q8IZL8 1130 aaKnown RBP25.36■■□□□ 1.65
UBE3A-227ENST00000638011 MYT1Q01538 1121 aa24.83■■□□□ 1.57
UBE3A-227ENST00000638011 CCER1Q8TC90 406 aaPredicted RBP24.04■■□□□ 1.44
UBE3A-227ENST00000638011 ERICH6Q7L0X2 663 aa23.78■■□□□ 1.4
UBE3A-227ENST00000638011 CENPBP07199 599 aaPredicted RBP23.61■■□□□ 1.37
UBE3A-227ENST00000638011 YTHDC1Q96MU7 727 aaKnown RBP23.46■■□□□ 1.35
UBE3A-227ENST00000638011 DCAF8L2P0C7V8 631 aa23.43■■□□□ 1.34
UBE3A-227ENST00000638011 ZEB1P37275 1124 aaPredicted RBP23.26■■□□□ 1.31
UBE3A-227ENST00000638011 TTBK1Q5TCY1 1321 aaPredicted RBP23.13■■□□□ 1.29
UBE3A-227ENST00000638011 APLP2Q06481 763 aa23.06■■□□□ 1.28
UBE3A-227ENST00000638011 NEFLP07196 543 aa23■■□□□ 1.27
UBE3A-227ENST00000638011 SUPT5HO00267 1087 aaKnown RBP22.88■■□□□ 1.25
UBE3A-227ENST00000638011 FAM9AQ8IZU1 332 aaPredicted RBP22.73■■□□□ 1.23
UBE3A-227ENST00000638011 DAXXQ9UER7 740 aaPredicted RBP22.63■■□□□ 1.21
UBE3A-227ENST00000638011 PCGF6Q9BYE7 350 aa22.47■■□□□ 1.19
UBE3A-227ENST00000638011 RTL5Q5HYW3 569 aaPredicted RBP22.28■■□□□ 1.16
UBE3A-227ENST00000638011 NISCHQ9Y2I1 1504 aa22.09■■□□□ 1.13
UBE3A-227ENST00000638011 ZNF316A6NFI3 1004 aaPredicted RBP21.98■■□□□ 1.11
UBE3A-227ENST00000638011 EHMT2Q96KQ7 1210 aa21.95■■□□□ 1.1
UBE3A-227ENST00000638011 SHROOM4Q9ULL8 1493 aa21.94■■□□□ 1.1
UBE3A-227ENST00000638011 GLIPR1L2Q4G1C9 344 aa21.89■■□□□ 1.1
UBE3A-227ENST00000638011 TRIM26Q12899 539 aaPredicted RBP21.68■■□□□ 1.06
UBE3A-227ENST00000638011 MYT1LQ9UL68 1186 aa21.66■■□□□ 1.06
UBE3A-227ENST00000638011 HRCP23327 699 aa21.62■■□□□ 1.05
UBE3A-227ENST00000638011 TRIM41Q8WV44 630 aa21.52■■□□□ 1.04
UBE3A-227ENST00000638011 CLSPNQ9HAW4 1339 aa21.49■■□□□ 1.03
UBE3A-227ENST00000638011 UBTFP17480 764 aaKnown RBP21.37■■□□□ 1.01
UBE3A-227ENST00000638011 CDK11AQ9UQ88 783 aaPredicted RBP21.35■■□□□ 1.01
UBE3A-227ENST00000638011 ANP32BQ92688 251 aaKnown RBP21.33■■□□□ 1.01
UBE3A-227ENST00000638011 DIEXFQ68CQ4 756 aaKnown RBP21.25■□□□□ 0.99
UBE3A-227ENST00000638011 ATP1B4Q9UN42 357 aaPredicted RBP21.24■□□□□ 0.99
UBE3A-227ENST00000638011 ANP32AP39687 249 aaKnown RBP21.21■□□□□ 0.99
UBE3A-227ENST00000638011 EIF5BO60841 1220 aaKnown RBP21.12■□□□□ 0.97
UBE3A-227ENST00000638011 ZBTB47Q9UFB7 747 aaPredicted RBP21.11■□□□□ 0.97
UBE3A-227ENST00000638011 RANGAP1P46060 587 aaPredicted RBP21.01■□□□□ 0.95
UBE3A-227ENST00000638011 GTF3C3Q9Y5Q9 886 aa20.97■□□□□ 0.95
UBE3A-227ENST00000638011 TNNT2P45379 298 aaPredicted RBP20.93■□□□□ 0.94
UBE3A-227ENST00000638011 POLR3GLQ9BT43 218 aa20.91■□□□□ 0.94
UBE3A-227ENST00000638011 ANP32CO43423 234 aa20.84■□□□□ 0.93
UBE3A-227ENST00000638011 UPF2Q9HAU5 1272 aaKnown RBP20.8■□□□□ 0.92
UBE3A-227ENST00000638011 NEFMP07197 916 aa20.8■□□□□ 0.92
UBE3A-227ENST00000638011 ANP32EQ9BTT0 268 aa20.73■□□□□ 0.91
UBE3A-227ENST00000638011 HSP90AA1P07900 732 aaKnown RBP20.71■□□□□ 0.91
UBE3A-227ENST00000638011 ACIN1Q9UKV3 1341 aaKnown RBP20.69■□□□□ 0.9
UBE3A-227ENST00000638011 CANXP27824 592 aaKnown RBP20.67■□□□□ 0.9
UBE3A-227ENST00000638011 TRIM44Q96DX7 344 aaPredicted RBP20.65■□□□□ 0.9
UBE3A-227ENST00000638011 SLC4A1APQ9BWU0 796 aaKnown RBP20.62■□□□□ 0.89
UBE3A-227ENST00000638011 NCLP19338 710 aaKnown RBP20.58■□□□□ 0.89
UBE3A-227ENST00000638011 ITGAEP38570 1179 aa20.55■□□□□ 0.88
UBE3A-227ENST00000638011 BCANQ96GW7 911 aa20.54■□□□□ 0.88
UBE3A-227ENST00000638011 HNRNPUL2Q1KMD3 747 aaKnown RBP20.52■□□□□ 0.88
UBE3A-227ENST00000638011 PPARGC1BQ86YN6 1023 aaKnown RBP20.48■□□□□ 0.87
UBE3A-227ENST00000638011 CDK11BP21127 795 aaKnown RBP20.45■□□□□ 0.86
UBE3A-227ENST00000638011 ERICH6BQ5W0A0 696 aa20.43■□□□□ 0.86
UBE3A-227ENST00000638011 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.43■□□□□ 0.86
UBE3A-227ENST00000638011 CNGB1Q14028 1251 aaPredicted RBP20.37■□□□□ 0.85
UBE3A-227ENST00000638011 DDRGK1Q96HY6 314 aa20.34■□□□□ 0.85
UBE3A-227ENST00000638011 NPM2Q86SE8 214 aaKnown RBP20.34■□□□□ 0.85
UBE3A-227ENST00000638011 BECN1Q14457 450 aa20.31■□□□□ 0.84
UBE3A-227ENST00000638011 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.28■□□□□ 0.84
UBE3A-227ENST00000638011 GOLGA6L22H0YM25 854 aa20.27■□□□□ 0.84
UBE3A-227ENST00000638011 NBR1Q14596 966 aa20.23■□□□□ 0.83
UBE3A-227ENST00000638011 FKBP8Q14318 412 aa20.17■□□□□ 0.82
UBE3A-227ENST00000638011 FAM50AQ14320 339 aaKnown RBP20.16■□□□□ 0.82
UBE3A-227ENST00000638011 CCDC136Q96JN2 1154 aa20.15■□□□□ 0.82
UBE3A-227ENST00000638011 CHIC1Q5VXU3 224 aa20.13■□□□□ 0.81
UBE3A-227ENST00000638011 TRIM52Q96A61 297 aa20.13■□□□□ 0.81
UBE3A-227ENST00000638011 NEUROD1Q13562 356 aa20.09■□□□□ 0.81
UBE3A-227ENST00000638011 PPM1GO15355 546 aaPredicted RBP20.07■□□□□ 0.8
UBE3A-227ENST00000638011 LOC105371045A0A1W2PR82 267 aa20.06■□□□□ 0.8
UBE3A-227ENST00000638011 CHAF1AQ13111 956 aaPredicted RBP20.04■□□□□ 0.8
UBE3A-227ENST00000638011 NRDCO43847 1150 aa20.03■□□□□ 0.8
UBE3A-227ENST00000638011 GOLGA6L6A8MZA4 724 aa20.03■□□□□ 0.8
UBE3A-227ENST00000638011 DNTTIP2Q5QJE6 756 aaKnown RBP20.03■□□□□ 0.8
UBE3A-227ENST00000638011 ZRSR1Q15695 479 aaKnown RBP20.02■□□□□ 0.8
UBE3A-227ENST00000638011 MYH16Q9H6N6 1097 aa20■□□□□ 0.79
UBE3A-227ENST00000638011 SLC24A1O60721 1099 aa20■□□□□ 0.79
UBE3A-227ENST00000638011 PTMAP06454 111 aaKnown RBP19.99■□□□□ 0.79
UBE3A-227ENST00000638011 NAP1L5Q96NT1 182 aaPredicted RBP19.98■□□□□ 0.79
UBE3A-227ENST00000638011 DCAF1Q9Y4B6 1507 aa19.96■□□□□ 0.79
UBE3A-227ENST00000638011 HNRNPUQ00839 825 aaKnown RBP eCLIP19.96■□□□□ 0.79
UBE3A-227ENST00000638011 L1TD1Q5T7N2 865 aaKnown RBP19.91■□□□□ 0.78
UBE3A-227ENST00000638011 TONSLQ96HA7 1378 aa19.9■□□□□ 0.78
UBE3A-227ENST00000638011 ZNF326Q5BKZ1 582 aaKnown RBP19.9■□□□□ 0.78
UBE3A-227ENST00000638011 ARXQ96QS3 562 aa19.89■□□□□ 0.77
UBE3A-227ENST00000638011 BCL11AQ9H165 835 aa19.89■□□□□ 0.77
UBE3A-227ENST00000638011 CCDC180Q9P1Z9 1646 aa19.87■□□□□ 0.77
UBE3A-227ENST00000638011 CASC1Q6TDU7 716 aa19.85■□□□□ 0.77
UBE3A-227ENST00000638011 TMC1Q8TDI8 760 aa19.79■□□□□ 0.76
UBE3A-227ENST00000638011 MSNP26038 577 aaKnown RBP19.79■□□□□ 0.76
UBE3A-227ENST00000638011 USP35Q9P2H5 1018 aa19.78■□□□□ 0.76
UBE3A-227ENST00000638011 ARID4BQ4LE39 1312 aaPredicted RBP19.78■□□□□ 0.76
UBE3A-227ENST00000638011 PTMSP20962 102 aa19.77■□□□□ 0.76
UBE3A-227ENST00000638011 WDR43Q15061 677 aaKnown RBP eCLIP19.71■□□□□ 0.751e-6■□□□□ 10.7
UBE3A-227ENST00000638011 NOP58Q9Y2X3 529 aaKnown RBP19.71■□□□□ 0.75
UBE3A-227ENST00000638011 SCAF1Q9H7N4 1312 aaKnown RBP19.7■□□□□ 0.74
UBE3A-227ENST00000638011 TNNT3P45378 269 aaPredicted RBP19.7■□□□□ 0.74
UBE3A-227ENST00000638011 CFAP44Q96MT7 982 aa19.65■□□□□ 0.74
UBE3A-227ENST00000638011 CHMP4BQ9H444 224 aaKnown RBP19.65■□□□□ 0.74
UBE3A-227ENST00000638011 FAM9BQ8IZU0 186 aa19.63■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms