RNA–Protein interactions for RNA: ENST00000254480.9

SMARCC1-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMARCC1, Length 6,375 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-201ENST00000254480 DCAF8L2P0C7V8 631 aa33.06■■■□□ 2.88
SMARCC1-201ENST00000254480 SUPT5HO00267 1087 aaKnown RBP31.22■■■□□ 2.59
SMARCC1-201ENST00000254480 EHMT2Q96KQ7 1210 aa30.83■■■□□ 2.53
SMARCC1-201ENST00000254480 SHROOM4Q9ULL8 1493 aa30.7■■■□□ 2.51
SMARCC1-201ENST00000254480 NISCHQ9Y2I1 1504 aa30.16■■■□□ 2.42
SMARCC1-201ENST00000254480 TTBK1Q5TCY1 1321 aaPredicted RBP29.7■■■□□ 2.35
SMARCC1-201ENST00000254480 FAM9AQ8IZU1 332 aaPredicted RBP29.63■■■□□ 2.33
SMARCC1-201ENST00000254480 APLP2Q06481 763 aa29.46■■■□□ 2.31
SMARCC1-201ENST00000254480 RANGAP1P46060 587 aaPredicted RBP29.33■■■□□ 2.29
SMARCC1-201ENST00000254480 PELP1Q8IZL8 1130 aaKnown RBP29.13■■■□□ 2.25
SMARCC1-201ENST00000254480 PCGF6Q9BYE7 350 aa29.1■■■□□ 2.25
SMARCC1-201ENST00000254480 ATP1B4Q9UN42 357 aaPredicted RBP28.9■■■□□ 2.22
SMARCC1-201ENST00000254480 TRIM41Q8WV44 630 aa28.63■■■□□ 2.17
SMARCC1-201ENST00000254480 CCER1Q8TC90 406 aaPredicted RBP28.56■■■□□ 2.16
SMARCC1-201ENST00000254480 UBTFP17480 764 aaKnown RBP28.47■■■□□ 2.15
SMARCC1-201ENST00000254480 PPARGC1BQ86YN6 1023 aaKnown RBP28.45■■■□□ 2.15
SMARCC1-201ENST00000254480 ERICH6Q7L0X2 663 aa28.3■■■□□ 2.12
SMARCC1-201ENST00000254480 YTHDC1Q96MU7 727 aaKnown RBP28.28■■■□□ 2.12
SMARCC1-201ENST00000254480 CENPBP07199 599 aaPredicted RBP28.23■■■□□ 2.11
SMARCC1-201ENST00000254480 ZEB1P37275 1124 aaPredicted RBP28.03■■■□□ 2.08
SMARCC1-201ENST00000254480 ITGAEP38570 1179 aa27.89■■■□□ 2.06
SMARCC1-201ENST00000254480 NEFLP07196 543 aa27.81■■■□□ 2.04
SMARCC1-201ENST00000254480 MYT1LQ9UL68 1186 aa27.77■■■□□ 2.04
SMARCC1-201ENST00000254480 POLR3GLQ9BT43 218 aa27.77■■■□□ 2.04
SMARCC1-201ENST00000254480 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP27.74■■■□□ 2.03
SMARCC1-201ENST00000254480 HNRNPUL2Q1KMD3 747 aaKnown RBP27.74■■■□□ 2.03
SMARCC1-201ENST00000254480 CNGB1Q14028 1251 aaPredicted RBP27.74■■■□□ 2.03
SMARCC1-201ENST00000254480 LOC105371045A0A1W2PR82 267 aa27.61■■■□□ 2.01
SMARCC1-201ENST00000254480 CHIC1Q5VXU3 224 aa27.6■■■□□ 2.01
SMARCC1-201ENST00000254480 TRIM26Q12899 539 aaPredicted RBP27.46■■□□□ 1.99
SMARCC1-201ENST00000254480 HRCP23327 699 aa27.27■■□□□ 1.96
SMARCC1-201ENST00000254480 SLC4A1APQ9BWU0 796 aaKnown RBP27.23■■□□□ 1.95
SMARCC1-201ENST00000254480 MYT1Q01538 1121 aa27.17■■□□□ 1.94
SMARCC1-201ENST00000254480 DAXXQ9UER7 740 aaPredicted RBP27.1■■□□□ 1.93
SMARCC1-201ENST00000254480 PABPN1Q86U42 306 aaKnown RBP eCLIP26.97■■□□□ 1.91
SMARCC1-201ENST00000254480 FAM50AQ14320 339 aaKnown RBP26.95■■□□□ 1.9
SMARCC1-201ENST00000254480 NEUROD1Q13562 356 aa26.81■■□□□ 1.88
SMARCC1-201ENST00000254480 TRIM52Q96A61 297 aa26.81■■□□□ 1.88
SMARCC1-201ENST00000254480 DIEXFQ68CQ4 756 aaKnown RBP26.71■■□□□ 1.87
SMARCC1-201ENST00000254480 CLSPNQ9HAW4 1339 aa26.71■■□□□ 1.87
SMARCC1-201ENST00000254480 ZNF326Q5BKZ1 582 aaKnown RBP26.68■■□□□ 1.86
SMARCC1-201ENST00000254480 ABCC9O60706 1549 aa26.68■■□□□ 1.86
SMARCC1-201ENST00000254480 FBLN2P98095 1184 aa26.63■■□□□ 1.85
SMARCC1-201ENST00000254480 BCANQ96GW7 911 aa26.62■■□□□ 1.85
SMARCC1-201ENST00000254480 ARID3CA6NKF2 412 aa26.58■■□□□ 1.85
SMARCC1-201ENST00000254480 BCL11AQ9H165 835 aa26.52■■□□□ 1.84
SMARCC1-201ENST00000254480 ZNF316A6NFI3 1004 aaPredicted RBP26.51■■□□□ 1.83
SMARCC1-201ENST00000254480 P3H3Q8IVL6 736 aa26.44■■□□□ 1.82
SMARCC1-201ENST00000254480 SLC24A1O60721 1099 aa26.37■■□□□ 1.81
SMARCC1-201ENST00000254480 RTL5Q5HYW3 569 aaPredicted RBP26.35■■□□□ 1.81
SMARCC1-201ENST00000254480 ANP32CO43423 234 aa26.22■■□□□ 1.79
SMARCC1-201ENST00000254480 GTF3C3Q9Y5Q9 886 aa26.22■■□□□ 1.79
SMARCC1-201ENST00000254480 ZNF777Q9ULD5 760 aaPredicted RBP26.17■■□□□ 1.78
SMARCC1-201ENST00000254480 PLPPR3Q6T4P5 718 aa26.07■■□□□ 1.76
SMARCC1-201ENST00000254480 CANXP27824 592 aaKnown RBP26.06■■□□□ 1.76
SMARCC1-201ENST00000254480 ZBTB47Q9UFB7 747 aaPredicted RBP26.05■■□□□ 1.76
SMARCC1-201ENST00000254480 CDK11AQ9UQ88 783 aaPredicted RBP25.96■■□□□ 1.75
SMARCC1-201ENST00000254480 CSRNP3Q8WYN3 585 aa25.85■■□□□ 1.73
SMARCC1-201ENST00000254480 CHGAP10645 457 aaKnown RBP25.85■■□□□ 1.73
SMARCC1-201ENST00000254480 NPM2Q86SE8 214 aaKnown RBP25.82■■□□□ 1.72
SMARCC1-201ENST00000254480 NEFMP07197 916 aa25.81■■□□□ 1.72
SMARCC1-201ENST00000254480 SALL2Q9Y467 1007 aaPredicted RBP25.75■■□□□ 1.71
SMARCC1-201ENST00000254480 STAG3Q9UJ98 1225 aa25.66■■□□□ 1.7
SMARCC1-201ENST00000254480 ESF1Q9H501 851 aaKnown RBP25.66■■□□□ 1.7
SMARCC1-201ENST00000254480 SENP3Q9H4L4 574 aaPredicted RBP25.66■■□□□ 1.7
SMARCC1-201ENST00000254480 CHIC2Q9UKJ5 165 aa25.66■■□□□ 1.7
SMARCC1-201ENST00000254480 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.62■■□□□ 1.692e-8■■■□□ 15.3
SMARCC1-201ENST00000254480 FAM9BQ8IZU0 186 aa25.61■■□□□ 1.69
SMARCC1-201ENST00000254480 ACIN1Q9UKV3 1341 aaKnown RBP25.58■■□□□ 1.69
SMARCC1-201ENST00000254480 DDX10Q13206 875 aaKnown RBP25.58■■□□□ 1.69
SMARCC1-201ENST00000254480 FKBP8Q14318 412 aa25.57■■□□□ 1.68
SMARCC1-201ENST00000254480 TONSLQ96HA7 1378 aa25.53■■□□□ 1.68
SMARCC1-201ENST00000254480 HNRNPUQ00839 825 aaKnown RBP eCLIP25.52■■□□□ 1.68
SMARCC1-201ENST00000254480 ANP32AP39687 249 aaKnown RBP25.52■■□□□ 1.68
SMARCC1-201ENST00000254480 SCRIBQ14160 1630 aa25.52■■□□□ 1.68
SMARCC1-201ENST00000254480 PLEKHG5O94827 1062 aa25.47■■□□□ 1.67
SMARCC1-201ENST00000254480 HIRIP3Q9BW71 556 aaPredicted RBP25.46■■□□□ 1.67
SMARCC1-201ENST00000254480 KDM2AQ9Y2K7 1162 aa25.46■■□□□ 1.67
SMARCC1-201ENST00000254480 NPM1P06748 294 aaKnown RBP eCLIP25.39■■□□□ 1.66
SMARCC1-201ENST00000254480 HSP90AA1P07900 732 aaKnown RBP25.36■■□□□ 1.65
SMARCC1-201ENST00000254480 SCAF1Q9H7N4 1312 aaKnown RBP25.36■■□□□ 1.65
SMARCC1-201ENST00000254480 SENP3-EIF4A1A0A087X0R7 540 aa25.31■■□□□ 1.64
SMARCC1-201ENST00000254480 IRX6P78412 446 aaPredicted RBP25.31■■□□□ 1.64
SMARCC1-201ENST00000254480 A0A0G2JS52 829 aa25.28■■□□□ 1.64
SMARCC1-201ENST00000254480 TMC1Q8TDI8 760 aa25.28■■□□□ 1.64
SMARCC1-201ENST00000254480 ARXQ96QS3 562 aa25.27■■□□□ 1.64
SMARCC1-201ENST00000254480 ZBTB7CA1YPR0 619 aa25.24■■□□□ 1.63
SMARCC1-201ENST00000254480 RRP7BPQ9NSQ0 103 aa25.17■■□□□ 1.62
SMARCC1-201ENST00000254480 NBR1Q14596 966 aa25.17■■□□□ 1.62
SMARCC1-201ENST00000254480 MRS2Q9HD23 443 aa25.16■■□□□ 1.62
SMARCC1-201ENST00000254480 EIF5BO60841 1220 aaKnown RBP25.16■■□□□ 1.62
SMARCC1-201ENST00000254480 KCNH8Q96L42 1107 aa25.16■■□□□ 1.62
SMARCC1-201ENST00000254480 CCDC136Q96JN2 1154 aa25.16■■□□□ 1.62
SMARCC1-201ENST00000254480 WDR43Q15061 677 aaKnown RBP eCLIP25.16■■□□□ 1.622e-6■□□□□ 11.2
SMARCC1-201ENST00000254480 TSPY4P0CV99 314 aa25.15■■□□□ 1.62
SMARCC1-201ENST00000254480 TSPY10P0CW01 314 aa25.15■■□□□ 1.62
SMARCC1-201ENST00000254480 CHMP7Q8WUX9 453 aaPredicted RBP25.14■■□□□ 1.62
SMARCC1-201ENST00000254480 UPF2Q9HAU5 1272 aaKnown RBP25.13■■□□□ 1.61
SMARCC1-201ENST00000254480 MTUS2Q5JR59 1369 aa25.1■■□□□ 1.61
SMARCC1-201ENST00000254480 C14orf37Q86TY3 774 aa25.09■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms