RNA–Protein interactions for RNA: ENST00000572365.1

SF3B3-214, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 575 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-214ENST00000572365 AEBP2Q6ZN18 517 aaPredicted RBP22.18■■□□□ 1.14
SF3B3-214ENST00000572365 CHIC1Q5VXU3 224 aa22.1■■□□□ 1.13
SF3B3-214ENST00000572365 PHF23Q9BUL5 403 aaPredicted RBP19.48■□□□□ 0.71
SF3B3-214ENST00000572365 SENP3Q9H4L4 574 aaPredicted RBP18.75■□□□□ 0.59
SF3B3-214ENST00000572365 PLPPR3Q6T4P5 718 aa18.13■□□□□ 0.49
SF3B3-214ENST00000572365 FOXD1Q16676 465 aa17.35■□□□□ 0.37
SF3B3-214ENST00000572365 PPP6R1Q9UPN7 881 aa17.04■□□□□ 0.32
SF3B3-214ENST00000572365 ADRA2BP18089 450 aa17.02■□□□□ 0.32
SF3B3-214ENST00000572365 POTEDQ86YR6 584 aa16.48■□□□□ 0.23
SF3B3-214ENST00000572365 PIAS4Q8N2W9 510 aaPredicted RBP16.44■□□□□ 0.22
SF3B3-214ENST00000572365 KCNA4P22459 653 aa16.14■□□□□ 0.17
SF3B3-214ENST00000572365 PPP4R3CPQ6ZMV5 832 aa16.02■□□□□ 0.16
SF3B3-214ENST00000572365 MSH5O43196 834 aa16.01■□□□□ 0.15
SF3B3-214ENST00000572365 NCBP3Q53F19 620 aaKnown RBP15.73■□□□□ 0.11
SF3B3-214ENST00000572365 SCAF1Q9H7N4 1312 aaKnown RBP15.59■□□□□ 0.09
SF3B3-214ENST00000572365 NPM3O75607 178 aaKnown RBP15.51■□□□□ 0.07
SF3B3-214ENST00000572365 CNKSR2Q8WXI2 1034 aa15.49■□□□□ 0.07
SF3B3-214ENST00000572365 EHMT2Q96KQ7 1210 aa15.47■□□□□ 0.07
SF3B3-214ENST00000572365 SLC4A1APQ9BWU0 796 aaKnown RBP15.45■□□□□ 0.06
SF3B3-214ENST00000572365 MAPK8IP2Q13387 824 aaPredicted RBP15.32■□□□□ 0.04
SF3B3-214ENST00000572365 CSRNP3Q8WYN3 585 aa15.15■□□□□ 0.02
SF3B3-214ENST00000572365 RNF216Q9NWF9 866 aaPredicted RBP15.09■□□□□ 0.01
SF3B3-214ENST00000572365 DNAJC5BQ9UF47 199 aa15.09■□□□□ 0.01
SF3B3-214ENST00000572365 DMRT2Q9Y5R5 561 aa15.05■□□□□ -0
SF3B3-214ENST00000572365 HOXD11P31277 338 aaPredicted RBP14.93□□□□□ -0.02
SF3B3-214ENST00000572365 ZBTB22O15209 634 aa14.88□□□□□ -0.03
SF3B3-214ENST00000572365 FOXD4L1Q9NU39 408 aa14.74□□□□□ -0.05
SF3B3-214ENST00000572365 SLC4A2P04920 1241 aa14.55□□□□□ -0.08
SF3B3-214ENST00000572365 MYCNP04198 464 aaPredicted RBP14.32□□□□□ -0.12
SF3B3-214ENST00000572365 DCAF8L1A6NGE4 600 aa14.29□□□□□ -0.12
SF3B3-214ENST00000572365 ATXN8OSP0DMR3 200 aa14.23□□□□□ -0.13
SF3B3-214ENST00000572365 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.16□□□□□ -0.141e-8■□□□□ 9.9
SF3B3-214ENST00000572365 CACNB1Q02641 598 aaPredicted RBP14.05□□□□□ -0.16
SF3B3-214ENST00000572365 U3KPZ7 1027 aaPredicted RBP14.02□□□□□ -0.17
SF3B3-214ENST00000572365 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.99□□□□□ -0.17
SF3B3-214ENST00000572365 HNRNPUL2Q1KMD3 747 aaKnown RBP13.99□□□□□ -0.17
SF3B3-214ENST00000572365 SAMD1Q6SPF0 538 aaPredicted RBP13.97□□□□□ -0.17
SF3B3-214ENST00000572365 ATF5Q9Y2D1 282 aaPredicted RBP13.9□□□□□ -0.18
SF3B3-214ENST00000572365 APLP2Q06481 763 aa13.73□□□□□ -0.21
SF3B3-214ENST00000572365 FKBP8Q14318 412 aa13.63□□□□□ -0.23
SF3B3-214ENST00000572365 RNF39Q9H2S5 420 aa13.63□□□□□ -0.23
SF3B3-214ENST00000572365 ZNF219Q9P2Y4 722 aaPredicted RBP13.63□□□□□ -0.23
SF3B3-214ENST00000572365 C1QBPQ07021 282 aaKnown RBP13.48□□□□□ -0.25
SF3B3-214ENST00000572365 SPINK5Q9NQ38 1064 aaPredicted RBP13.48□□□□□ -0.25
SF3B3-214ENST00000572365 TRHP20396 242 aaPredicted RBP13.41□□□□□ -0.26
SF3B3-214ENST00000572365 CAPN15O75808 1086 aa13.37□□□□□ -0.27
SF3B3-214ENST00000572365 MKRN4PQ13434 485 aaPredicted RBP13.33□□□□□ -0.28
SF3B3-214ENST00000572365 POLA2Q14181 598 aa13.32□□□□□ -0.28
SF3B3-214ENST00000572365 FBLN2P98095 1184 aa13.27□□□□□ -0.29
SF3B3-214ENST00000572365 SPDYE4A6NLX3 237 aa13.22□□□□□ -0.29
SF3B3-214ENST00000572365 AMER1Q5JTC6 1135 aaPredicted RBP13.22□□□□□ -0.29
SF3B3-214ENST00000572365 RTN4Q9NQC3 1192 aaKnown RBP13.19□□□□□ -0.3
SF3B3-214ENST00000572365 ZBTB12Q9Y330 459 aaPredicted RBP13.17□□□□□ -0.3
SF3B3-214ENST00000572365 ABCB7O75027 752 aa13.15□□□□□ -0.3
SF3B3-214ENST00000572365 PROM2Q8N271 834 aa13.13□□□□□ -0.31
SF3B3-214ENST00000572365 NISCHQ9Y2I1 1504 aa13.12□□□□□ -0.31
SF3B3-214ENST00000572365 DSG3P32926 999 aa13.1□□□□□ -0.31
SF3B3-214ENST00000572365 FBXO3Q9UK99 471 aa13.06□□□□□ -0.32
SF3B3-214ENST00000572365 VASPP50552 380 aaPredicted RBP12.87□□□□□ -0.35
SF3B3-214ENST00000572365 SPDYE2BA6NHP3 402 aa12.85□□□□□ -0.35
SF3B3-214ENST00000572365 SPDYE6P0CI01 402 aa12.85□□□□□ -0.35
SF3B3-214ENST00000572365 SPDYE2Q495Y8 402 aa12.85□□□□□ -0.35
SF3B3-214ENST00000572365 OSCARQ8IYS5 282 aa12.85□□□□□ -0.35
SF3B3-214ENST00000572365 ZNF692Q9BU19 519 aaPredicted RBP12.84□□□□□ -0.35
SF3B3-214ENST00000572365 POTEHQ6S545 545 aa12.82□□□□□ -0.36
SF3B3-214ENST00000572365 SSUH2Q9Y2M2 353 aa12.81□□□□□ -0.36
SF3B3-214ENST00000572365 IFNLR1Q8IU57 520 aaPredicted RBP12.73□□□□□ -0.37
SF3B3-214ENST00000572365 PABPN1Q86U42 306 aaKnown RBP eCLIP12.68□□□□□ -0.38
SF3B3-214ENST00000572365 ABCC9O60706 1549 aa12.67□□□□□ -0.38
SF3B3-214ENST00000572365 STAG3Q9UJ98 1225 aa12.66□□□□□ -0.38
SF3B3-214ENST00000572365 SLC24A1O60721 1099 aa12.63□□□□□ -0.39
SF3B3-214ENST00000572365 KLHL34Q8N239 644 aa12.5□□□□□ -0.41
SF3B3-214ENST00000572365 PLCD3Q8N3E9 789 aa12.49□□□□□ -0.41
SF3B3-214ENST00000572365 SPOCK2Q92563 424 aa12.49□□□□□ -0.41
SF3B3-214ENST00000572365 PKD2Q13563 968 aa12.48□□□□□ -0.41
SF3B3-214ENST00000572365 MIER1Q8N108 512 aa12.46□□□□□ -0.41
SF3B3-214ENST00000572365 RBM42Q9BTD8 480 aaKnown RBP12.46□□□□□ -0.41
SF3B3-214ENST00000572365 AKT1S1Q96B36 256 aa12.41□□□□□ -0.42
SF3B3-214ENST00000572365 PLEKHG5O94827 1062 aa12.37□□□□□ -0.43
SF3B3-214ENST00000572365 ZBTB47Q9UFB7 747 aaPredicted RBP12.36□□□□□ -0.43
SF3B3-214ENST00000572365 SPDYE1Q8NFV5 336 aaPredicted RBP12.34□□□□□ -0.43
SF3B3-214ENST00000572365 REM2Q8IYK8 340 aaPredicted RBP12.29□□□□□ -0.44
SF3B3-214ENST00000572365 ECM2O94769 699 aaPredicted RBP12.28□□□□□ -0.44
SF3B3-214ENST00000572365 DCAF8L2P0C7V8 631 aa12.27□□□□□ -0.45
SF3B3-214ENST00000572365 PLCB2Q00722 1185 aa12.22□□□□□ -0.45
SF3B3-214ENST00000572365 CLEC11AQ9Y240 323 aa12.22□□□□□ -0.45
SF3B3-214ENST00000572365 PRR29P0C7W0 189 aa12.2□□□□□ -0.46
SF3B3-214ENST00000572365 CREBZFQ9NS37 354 aa12.18□□□□□ -0.46
SF3B3-214ENST00000572365 CIZ1Q9ULV3 898 aaPredicted RBP12.18□□□□□ -0.46
SF3B3-214ENST00000572365 RGL2O15211 777 aa12.17□□□□□ -0.46
SF3B3-214ENST00000572365 NUBP1P53384 320 aa12.15□□□□□ -0.46
SF3B3-214ENST00000572365 TRIM41Q8WV44 630 aa12.15□□□□□ -0.46
SF3B3-214ENST00000572365 MNX1P50219 401 aaPredicted RBP12.14□□□□□ -0.47
SF3B3-214ENST00000572365 PITPNM1O00562 1244 aa12.13□□□□□ -0.47
SF3B3-214ENST00000572365 GSE1Q14687 1217 aa12.11□□□□□ -0.47
SF3B3-214ENST00000572365 NPM1P06748 294 aaKnown RBP eCLIP12.09□□□□□ -0.47
SF3B3-214ENST00000572365 BBXQ8WY36 941 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-214ENST00000572365 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.03□□□□□ -0.48
SF3B3-214ENST00000572365 DCAF8Q5TAQ9 597 aa12.02□□□□□ -0.49
SF3B3-214ENST00000572365 FAM212AQ96EL1 285 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms