RNA–Protein interactions for RNA: ENST00000489927.1

PLOD3-216, Transcript of procollagen-lysine,2-oxoglutarate 5-dioxygenase 3, humanhuman

TSL 2

Gene PLOD3, Length 562 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PLOD3-216ENST00000489927 NISCHQ9Y2I1 1504 aa40.01■■■■□ 3.99
PLOD3-216ENST00000489927 ABCC9O60706 1549 aa36.06■■■■□ 3.36
PLOD3-216ENST00000489927 CCDC180Q9P1Z9 1646 aa35.91■■■■□ 3.34
PLOD3-216ENST00000489927 RB1CC1Q8TDY2 1594 aa34.25■■■■□ 3.07
PLOD3-216ENST00000489927 NACADO15069 1562 aa33.99■■■■□ 3.03
PLOD3-216ENST00000489927 DNAJC5BQ9UF47 199 aa33.94■■■■□ 3.02
PLOD3-216ENST00000489927 DCAF8L2P0C7V8 631 aa33.83■■■■□ 3.01
PLOD3-216ENST00000489927 PABPN1Q86U42 306 aaKnown RBP eCLIP33.57■■■□□ 2.96
PLOD3-216ENST00000489927 MYO15BQ96JP2 1530 aa33.48■■■□□ 2.95
PLOD3-216ENST00000489927 UNC13AQ9UPW8 1703 aa33.46■■■□□ 2.95
PLOD3-216ENST00000489927 BICRAQ9NZM4 1560 aa33.28■■■□□ 2.92
PLOD3-216ENST00000489927 ZCCHC6Q5VYS8 1495 aaKnown RBP33.13■■■□□ 2.89
PLOD3-216ENST00000489927 DCAF1Q9Y4B6 1507 aa33.02■■■□□ 2.88
PLOD3-216ENST00000489927 SHROOM4Q9ULL8 1493 aa32.79■■■□□ 2.84
PLOD3-216ENST00000489927 SCRIBQ14160 1630 aa32.74■■■□□ 2.83
PLOD3-216ENST00000489927 CC2D2AQ9P2K1 1620 aa32.55■■■□□ 2.8
PLOD3-216ENST00000489927 CECR2Q9BXF3 1484 aa32.49■■■□□ 2.79
PLOD3-216ENST00000489927 EIF4G1Q04637 1599 aaKnown RBP32.47■■■□□ 2.79
PLOD3-216ENST00000489927 NCAPD3P42695 1498 aa31.4■■■□□ 2.62
PLOD3-216ENST00000489927 ATAD2BQ9ULI0 1458 aa31.29■■■□□ 2.6
PLOD3-216ENST00000489927 DNAJC5Q9H3Z4 198 aa31.22■■■□□ 2.59
PLOD3-216ENST00000489927 SMARCA4P51532 1647 aa31.22■■■□□ 2.59
PLOD3-216ENST00000489927 SMARCA2P51531 1590 aa31.17■■■□□ 2.58
PLOD3-216ENST00000489927 HMGXB3Q12766 1538 aa31.14■■■□□ 2.58
PLOD3-216ENST00000489927 ERCC6Q03468 1493 aa31.13■■■□□ 2.57
PLOD3-216ENST00000489927 CUX2O14529 1486 aa31.09■■■□□ 2.57
PLOD3-216ENST00000489927 BAZ1AQ9NRL2 1556 aaPredicted RBP31.05■■■□□ 2.56
PLOD3-216ENST00000489927 BAZ1BQ9UIG0 1483 aaKnown RBP30.98■■■□□ 2.55
PLOD3-216ENST00000489927 NESP48681 1621 aa30.95■■■□□ 2.55
PLOD3-216ENST00000489927 PEG3Q9GZU2 1588 aa30.92■■■□□ 2.54
PLOD3-216ENST00000489927 MROH2BQ7Z745 1585 aa30.83■■■□□ 2.53
PLOD3-216ENST00000489927 LAMC3Q9Y6N6 1575 aa30.69■■■□□ 2.5
PLOD3-216ENST00000489927 THOC2Q8NI27 1593 aaKnown RBP30.64■■■□□ 2.5
PLOD3-216ENST00000489927 PDS5BQ9NTI5 1447 aa30.53■■■□□ 2.48
PLOD3-216ENST00000489927 KIF21AQ7Z4S6 1674 aa30.52■■■□□ 2.48
PLOD3-216ENST00000489927 WIZO95785 1651 aa30.45■■■□□ 2.46
PLOD3-216ENST00000489927 CADPSQ9ULU8 1353 aa30.44■■■□□ 2.46
PLOD3-216ENST00000489927 MRC2Q9UBG0 1479 aa30.27■■■□□ 2.44
PLOD3-216ENST00000489927 WDR62O43379 1518 aa30.21■■■□□ 2.43
PLOD3-216ENST00000489927 RSF1Q96T23 1441 aaPredicted RBP30.16■■■□□ 2.42
PLOD3-216ENST00000489927 CEP164Q9UPV0 1460 aa30.13■■■□□ 2.41
PLOD3-216ENST00000489927 FANCD2Q9BXW9 1451 aa30.1■■■□□ 2.41
PLOD3-216ENST00000489927 CFTRP13569 1480 aa30.07■■■□□ 2.4
PLOD3-216ENST00000489927 TOP2AP11388 1531 aaKnown RBP30.06■■■□□ 2.4
PLOD3-216ENST00000489927 URB2Q14146 1524 aaKnown RBP29.86■■■□□ 2.37
PLOD3-216ENST00000489927 TRIM41Q8WV44 630 aa29.82■■■□□ 2.36
PLOD3-216ENST00000489927 CCDC88BA6NC98 1476 aa29.73■■■□□ 2.35
PLOD3-216ENST00000489927 PRDM2Q13029 1718 aa29.71■■■□□ 2.35
PLOD3-216ENST00000489927 OSCARQ8IYS5 282 aa29.67■■■□□ 2.34
PLOD3-216ENST00000489927 IFT140Q96RY7 1462 aa29.53■■■□□ 2.32
PLOD3-216ENST00000489927 ZNF608Q9ULD9 1512 aaPredicted RBP29.52■■■□□ 2.32
PLOD3-216ENST00000489927 TOPBP1Q92547 1522 aa29.51■■■□□ 2.32
PLOD3-216ENST00000489927 ABCC8Q09428 1581 aa29.42■■■□□ 2.3
PLOD3-216ENST00000489927 DNMBPQ6XZF7 1577 aa29.39■■■□□ 2.29
PLOD3-216ENST00000489927 EIF4G3O43432 1585 aaKnown RBP29.33■■■□□ 2.29
PLOD3-216ENST00000489927 RIMBP3CA6NJZ7 1639 aa29.29■■■□□ 2.28
PLOD3-216ENST00000489927 RIMBP3BA6NNM3 1639 aa29.29■■■□□ 2.28
PLOD3-216ENST00000489927 RIMBP3Q9UFD9 1639 aa29.29■■■□□ 2.28
PLOD3-216ENST00000489927 TARBP1Q13395 1621 aaKnown RBP29.26■■■□□ 2.27
PLOD3-216ENST00000489927 AQRO60306 1485 aaKnown RBP eCLIP29.24■■■□□ 2.278e-6■■■■□ 23.2
PLOD3-216ENST00000489927 POLA1P09884 1462 aaPredicted RBP29.22■■■□□ 2.27
PLOD3-216ENST00000489927 ARHGEF11O15085 1522 aa29.2■■■□□ 2.27
PLOD3-216ENST00000489927 CHD1O14646 1710 aa29.11■■■□□ 2.25
PLOD3-216ENST00000489927 RAD54L2Q9Y4B4 1467 aa29.11■■■□□ 2.25
PLOD3-216ENST00000489927 SOGA1O94964 1423 aa29.07■■■□□ 2.24
PLOD3-216ENST00000489927 FBLN2P98095 1184 aa29.06■■■□□ 2.24
PLOD3-216ENST00000489927 TDRD9Q8NDG6 1382 aaKnown RBP29.04■■■□□ 2.24
PLOD3-216ENST00000489927 FGD5Q6ZNL6 1462 aa29.01■■■□□ 2.23
PLOD3-216ENST00000489927 CYB5RLQ6IPT4 315 aa29■■■□□ 2.23
PLOD3-216ENST00000489927 CUX1P39880 1505 aa28.98■■■□□ 2.23
PLOD3-216ENST00000489927 SNAPC4Q5SXM2 1469 aa28.93■■■□□ 2.22
PLOD3-216ENST00000489927 WDR97A6NE52 1622 aa28.92■■■□□ 2.22
PLOD3-216ENST00000489927 ARAP1Q96P48 1450 aa28.91■■■□□ 2.22
PLOD3-216ENST00000489927 GRIN2BQ13224 1484 aa28.83■■■□□ 2.21
PLOD3-216ENST00000489927 MAGI1Q96QZ7 1491 aaPredicted RBP28.83■■■□□ 2.21
PLOD3-216ENST00000489927 CHMP7Q8WUX9 453 aaPredicted RBP28.82■■■□□ 2.2
PLOD3-216ENST00000489927 CLASP1Q7Z460 1538 aa28.8■■■□□ 2.2
PLOD3-216ENST00000489927 SYNJ1O43426 1573 aa28.75■■■□□ 2.19
PLOD3-216ENST00000489927 SYNJ2O15056 1496 aa28.75■■■□□ 2.19
PLOD3-216ENST00000489927 SUPT5HO00267 1087 aaKnown RBP28.75■■■□□ 2.19
PLOD3-216ENST00000489927 GAPVD1Q14C86 1478 aa28.72■■■□□ 2.19
PLOD3-216ENST00000489927 TRHP20396 242 aaPredicted RBP28.7■■■□□ 2.18
PLOD3-216ENST00000489927 PBRM1Q86U86 1689 aa28.68■■■□□ 2.18
PLOD3-216ENST00000489927 ABCA10Q8WWZ4 1543 aa28.67■■■□□ 2.18
PLOD3-216ENST00000489927 ABCA5Q8WWZ7 1642 aa28.64■■■□□ 2.18
PLOD3-216ENST00000489927 WRNQ14191 1432 aaPredicted RBP eCLIP28.53■■■□□ 2.16
PLOD3-216ENST00000489927 TOP2BQ02880 1626 aa28.47■■■□□ 2.15
PLOD3-216ENST00000489927 GRIN2AQ12879 1464 aa28.46■■■□□ 2.15
PLOD3-216ENST00000489927 BIVM-ERCC5R4GMW8 1640 aa28.46■■■□□ 2.15
PLOD3-216ENST00000489927 ADAMTS12P58397 1594 aa28.43■■■□□ 2.14
PLOD3-216ENST00000489927 NUP160Q12769 1436 aa28.37■■■□□ 2.13
PLOD3-216ENST00000489927 CEP170Q5SW79 1584 aa28.37■■■□□ 2.13
PLOD3-216ENST00000489927 ERCC6L2Q5T890 1561 aa28.37■■■□□ 2.13
PLOD3-216ENST00000489927 FHAD1B1AJZ9 1412 aa28.34■■■□□ 2.13
PLOD3-216ENST00000489927 ERICH3Q5RHP9 1530 aa28.3■■■□□ 2.12
PLOD3-216ENST00000489927 SHROOM2Q13796 1616 aa28.25■■■□□ 2.11
PLOD3-216ENST00000489927 PRG4Q92954 1404 aaPredicted RBP28.11■■■□□ 2.09
PLOD3-216ENST00000489927 JPH4Q96JJ6 628 aa28.08■■■□□ 2.09
PLOD3-216ENST00000489927 RUSC2Q8N2Y8 1516 aa28.03■■■□□ 2.08
PLOD3-216ENST00000489927 IGF1RP08069 1367 aa27.94■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms