RNA–Protein interactions for RNA: ENST00000573989.1

TRAPPC1-206, Transcript of trafficking protein particle complex 1, humanhuman

TSL 2

Gene TRAPPC1, Length 436 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC1-206ENST00000573989 NISCHQ9Y2I1 1504 aa30.62■■■□□ 2.49
TRAPPC1-206ENST00000573989 CCDC180Q9P1Z9 1646 aa27.23■■□□□ 1.95
TRAPPC1-206ENST00000573989 ABCC9O60706 1549 aa26.41■■□□□ 1.82
TRAPPC1-206ENST00000573989 DCAF8L2P0C7V8 631 aa25.56■■□□□ 1.68
TRAPPC1-206ENST00000573989 RB1CC1Q8TDY2 1594 aa25.55■■□□□ 1.68
TRAPPC1-206ENST00000573989 NACADO15069 1562 aa25.54■■□□□ 1.68
TRAPPC1-206ENST00000573989 ZCCHC6Q5VYS8 1495 aaKnown RBP25.53■■□□□ 1.68
TRAPPC1-206ENST00000573989 MYO15BQ96JP2 1530 aa25.43■■□□□ 1.66
TRAPPC1-206ENST00000573989 DCAF1Q9Y4B6 1507 aa25.37■■□□□ 1.65
TRAPPC1-206ENST00000573989 UNC13AQ9UPW8 1703 aa24.95■■□□□ 1.58
TRAPPC1-206ENST00000573989 SCRIBQ14160 1630 aa24.79■■□□□ 1.56
TRAPPC1-206ENST00000573989 PABPN1Q86U42 306 aaKnown RBP eCLIP24.69■■□□□ 1.54
TRAPPC1-206ENST00000573989 BICRAQ9NZM4 1560 aa24.67■■□□□ 1.54
TRAPPC1-206ENST00000573989 SHROOM4Q9ULL8 1493 aa24.53■■□□□ 1.52
TRAPPC1-206ENST00000573989 EIF4G1Q04637 1599 aaKnown RBP24.06■■□□□ 1.44
TRAPPC1-206ENST00000573989 DNAJC5BQ9UF47 199 aa24.03■■□□□ 1.44
TRAPPC1-206ENST00000573989 CC2D2AQ9P2K1 1620 aa23.92■■□□□ 1.42
TRAPPC1-206ENST00000573989 CECR2Q9BXF3 1484 aa23.78■■□□□ 1.4
TRAPPC1-206ENST00000573989 BAZ1AQ9NRL2 1556 aaPredicted RBP23.76■■□□□ 1.39
TRAPPC1-206ENST00000573989 SMARCA4P51532 1647 aa23.74■■□□□ 1.39
TRAPPC1-206ENST00000573989 SMARCA2P51531 1590 aa23.6■■□□□ 1.37
TRAPPC1-206ENST00000573989 MROH2BQ7Z745 1585 aa23.56■■□□□ 1.36
TRAPPC1-206ENST00000573989 ATAD2BQ9ULI0 1458 aa23.55■■□□□ 1.36
TRAPPC1-206ENST00000573989 NCAPD3P42695 1498 aa23.52■■□□□ 1.36
TRAPPC1-206ENST00000573989 PEG3Q9GZU2 1588 aa23.51■■□□□ 1.35
TRAPPC1-206ENST00000573989 HMGXB3Q12766 1538 aa23.45■■□□□ 1.34
TRAPPC1-206ENST00000573989 BAZ1BQ9UIG0 1483 aaKnown RBP23.41■■□□□ 1.34
TRAPPC1-206ENST00000573989 RSF1Q96T23 1441 aaPredicted RBP23.35■■□□□ 1.33
TRAPPC1-206ENST00000573989 WIZO95785 1651 aa23.35■■□□□ 1.33
TRAPPC1-206ENST00000573989 TOP2AP11388 1531 aaKnown RBP23.13■■□□□ 1.29
TRAPPC1-206ENST00000573989 LAMC3Q9Y6N6 1575 aa22.93■■□□□ 1.26
TRAPPC1-206ENST00000573989 SUPT5HO00267 1087 aaKnown RBP22.91■■□□□ 1.26
TRAPPC1-206ENST00000573989 NESP48681 1621 aa22.87■■□□□ 1.25
TRAPPC1-206ENST00000573989 CADPSQ9ULU8 1353 aa22.86■■□□□ 1.25
TRAPPC1-206ENST00000573989 ERCC6Q03468 1493 aa22.83■■□□□ 1.25
TRAPPC1-206ENST00000573989 CCDC88BA6NC98 1476 aa22.82■■□□□ 1.24
TRAPPC1-206ENST00000573989 PDS5BQ9NTI5 1447 aa22.77■■□□□ 1.24
TRAPPC1-206ENST00000573989 CFTRP13569 1480 aa22.74■■□□□ 1.23
TRAPPC1-206ENST00000573989 KIF21AQ7Z4S6 1674 aa22.68■■□□□ 1.22
TRAPPC1-206ENST00000573989 PRDM2Q13029 1718 aa22.68■■□□□ 1.22
TRAPPC1-206ENST00000573989 FANCD2Q9BXW9 1451 aa22.6■■□□□ 1.21
TRAPPC1-206ENST00000573989 CEP164Q9UPV0 1460 aa22.58■■□□□ 1.2
TRAPPC1-206ENST00000573989 THOC2Q8NI27 1593 aaKnown RBP22.54■■□□□ 1.2
TRAPPC1-206ENST00000573989 CUX2O14529 1486 aa22.52■■□□□ 1.2
TRAPPC1-206ENST00000573989 MRC2Q9UBG0 1479 aa22.5■■□□□ 1.19
TRAPPC1-206ENST00000573989 WDR62O43379 1518 aa22.41■■□□□ 1.18
TRAPPC1-206ENST00000573989 ABCC8Q09428 1581 aa22.33■■□□□ 1.16
TRAPPC1-206ENST00000573989 URB2Q14146 1524 aaKnown RBP22.32■■□□□ 1.16
TRAPPC1-206ENST00000573989 DNMBPQ6XZF7 1577 aa22.26■■□□□ 1.15
TRAPPC1-206ENST00000573989 TOPBP1Q92547 1522 aa22.25■■□□□ 1.15
TRAPPC1-206ENST00000573989 CUX1P39880 1505 aa22.11■■□□□ 1.13
TRAPPC1-206ENST00000573989 IFT140Q96RY7 1462 aa22.09■■□□□ 1.13
TRAPPC1-206ENST00000573989 POLA1P09884 1462 aaPredicted RBP22.06■■□□□ 1.12
TRAPPC1-206ENST00000573989 WRNQ14191 1432 aaPredicted RBP eCLIP22.06■■□□□ 1.12
TRAPPC1-206ENST00000573989 FGD5Q6ZNL6 1462 aa22.03■■□□□ 1.12
TRAPPC1-206ENST00000573989 TOP2BQ02880 1626 aa22■■□□□ 1.11
TRAPPC1-206ENST00000573989 BIVM-ERCC5R4GMW8 1640 aa22■■□□□ 1.11
TRAPPC1-206ENST00000573989 SOGA1O94964 1423 aa21.99■■□□□ 1.11
TRAPPC1-206ENST00000573989 TARBP1Q13395 1621 aaKnown RBP21.98■■□□□ 1.11
TRAPPC1-206ENST00000573989 SYNJ1O43426 1573 aa21.96■■□□□ 1.11
TRAPPC1-206ENST00000573989 RAD54L2Q9Y4B4 1467 aa21.94■■□□□ 1.1
TRAPPC1-206ENST00000573989 ZNF608Q9ULD9 1512 aaPredicted RBP21.91■■□□□ 1.1
TRAPPC1-206ENST00000573989 WDR97A6NE52 1622 aa21.9■■□□□ 1.1
TRAPPC1-206ENST00000573989 EIF4G3O43432 1585 aaKnown RBP21.89■■□□□ 1.09
TRAPPC1-206ENST00000573989 ABCA10Q8WWZ4 1543 aa21.84■■□□□ 1.09
TRAPPC1-206ENST00000573989 AQRO60306 1485 aaKnown RBP eCLIP21.83■■□□□ 1.09
TRAPPC1-206ENST00000573989 TDRD9Q8NDG6 1382 aaKnown RBP21.82■■□□□ 1.08
TRAPPC1-206ENST00000573989 GAPVD1Q14C86 1478 aa21.75■■□□□ 1.07
TRAPPC1-206ENST00000573989 ABCA5Q8WWZ7 1642 aa21.73■■□□□ 1.07
TRAPPC1-206ENST00000573989 GRIN2BQ13224 1484 aa21.73■■□□□ 1.07
TRAPPC1-206ENST00000573989 PBRM1Q86U86 1689 aa21.72■■□□□ 1.07
TRAPPC1-206ENST00000573989 MAGI1Q96QZ7 1491 aaPredicted RBP21.67■■□□□ 1.06
TRAPPC1-206ENST00000573989 TRIM41Q8WV44 630 aa21.67■■□□□ 1.06
TRAPPC1-206ENST00000573989 SNAPC4Q5SXM2 1469 aa21.65■■□□□ 1.06
TRAPPC1-206ENST00000573989 OSCARQ8IYS5 282 aa21.62■■□□□ 1.05
TRAPPC1-206ENST00000573989 DNAJC5Q9H3Z4 198 aa21.62■■□□□ 1.05
TRAPPC1-206ENST00000573989 KIF27Q86VH2 1401 aa21.62■■□□□ 1.05
TRAPPC1-206ENST00000573989 CHD1O14646 1710 aa21.61■■□□□ 1.05
TRAPPC1-206ENST00000573989 ERICH3Q5RHP9 1530 aa21.6■■□□□ 1.05
TRAPPC1-206ENST00000573989 FBLN2P98095 1184 aa21.6■■□□□ 1.05
TRAPPC1-206ENST00000573989 CHMP7Q8WUX9 453 aaPredicted RBP21.58■■□□□ 1.05
TRAPPC1-206ENST00000573989 SYNJ2O15056 1496 aa21.57■■□□□ 1.04
TRAPPC1-206ENST00000573989 ADAMTS12P58397 1594 aa21.52■■□□□ 1.04
TRAPPC1-206ENST00000573989 FHAD1B1AJZ9 1412 aa21.5■■□□□ 1.03
TRAPPC1-206ENST00000573989 CUL7Q14999 1698 aa21.47■■□□□ 1.03
TRAPPC1-206ENST00000573989 IGF1RP08069 1367 aa21.45■■□□□ 1.02
TRAPPC1-206ENST00000573989 GRIN2AQ12879 1464 aa21.44■■□□□ 1.02
TRAPPC1-206ENST00000573989 CHIC1Q5VXU3 224 aa21.43■■□□□ 1.02
TRAPPC1-206ENST00000573989 CARMIL1Q5VZK9 1371 aa21.36■■□□□ 1.01
TRAPPC1-206ENST00000573989 RUSC2Q8N2Y8 1516 aa21.35■■□□□ 1.01
TRAPPC1-206ENST00000573989 CLASP1Q7Z460 1538 aa21.34■■□□□ 1.01
TRAPPC1-206ENST00000573989 NUP160Q12769 1436 aa21.31■■□□□ 1
TRAPPC1-206ENST00000573989 EEA1Q15075 1411 aa21.31■■□□□ 1
TRAPPC1-206ENST00000573989 CEP170Q5SW79 1584 aa21.3■■□□□ 1
TRAPPC1-206ENST00000573989 RAPGEF2Q9Y4G8 1499 aa21.26■□□□□ 0.99
TRAPPC1-206ENST00000573989 RIMBP3CA6NJZ7 1639 aa21.23■□□□□ 0.99
TRAPPC1-206ENST00000573989 RIMBP3BA6NNM3 1639 aa21.23■□□□□ 0.99
TRAPPC1-206ENST00000573989 RIMBP3Q9UFD9 1639 aa21.23■□□□□ 0.99
TRAPPC1-206ENST00000573989 CSRNP3Q8WYN3 585 aa21.23■□□□□ 0.99
TRAPPC1-206ENST00000573989 ARHGEF11O15085 1522 aa21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 170.5 ms