RNA–Protein interactions for RNA: ENST00000389194.6

LTN1-202, Transcript of listerin E3 ubiquitin protein ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LTN1, Length 7,749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LTN1-202ENST00000389194 DCAF8L2P0C7V8 631 aa8.89□□□□□ -0.99
LTN1-202ENST00000389194 SUPT5HO00267 1087 aaKnown RBP8.55□□□□□ -1.04
LTN1-202ENST00000389194 EHMT2Q96KQ7 1210 aa8.49□□□□□ -1.05
LTN1-202ENST00000389194 SHROOM4Q9ULL8 1493 aa8.46□□□□□ -1.06
LTN1-202ENST00000389194 NISCHQ9Y2I1 1504 aa8.26□□□□□ -1.09
LTN1-202ENST00000389194 TTBK1Q5TCY1 1321 aaPredicted RBP8.16□□□□□ -1.1
LTN1-202ENST00000389194 FAM9AQ8IZU1 332 aaPredicted RBP8.12□□□□□ -1.11
LTN1-202ENST00000389194 PCGF6Q9BYE7 350 aa8.08□□□□□ -1.12
LTN1-202ENST00000389194 RANGAP1P46060 587 aaPredicted RBP7.98□□□□□ -1.13
LTN1-202ENST00000389194 PPARGC1BQ86YN6 1023 aaKnown RBP7.92□□□□□ -1.14
LTN1-202ENST00000389194 APLP2Q06481 763 aa7.78□□□□□ -1.16
LTN1-202ENST00000389194 YTHDC1Q96MU7 727 aaKnown RBP7.78□□□□□ -1.16
LTN1-202ENST00000389194 CCER1Q8TC90 406 aaPredicted RBP7.76□□□□□ -1.17
LTN1-202ENST00000389194 TRIM41Q8WV44 630 aa7.75□□□□□ -1.17
LTN1-202ENST00000389194 ATP1B4Q9UN42 357 aaPredicted RBP7.73□□□□□ -1.17
LTN1-202ENST00000389194 LOC105371045A0A1W2PR82 267 aa7.73□□□□□ -1.17
LTN1-202ENST00000389194 UBTFP17480 764 aaKnown RBP7.67□□□□□ -1.18
LTN1-202ENST00000389194 PELP1Q8IZL8 1130 aaKnown RBP7.62□□□□□ -1.19
LTN1-202ENST00000389194 CENPBP07199 599 aaPredicted RBP7.58□□□□□ -1.2
LTN1-202ENST00000389194 ITGAEP38570 1179 aa7.58□□□□□ -1.2
LTN1-202ENST00000389194 CNGB1Q14028 1251 aaPredicted RBP7.58□□□□□ -1.2
LTN1-202ENST00000389194 HRCP23327 699 aa7.55□□□□□ -1.2
LTN1-202ENST00000389194 CHIC1Q5VXU3 224 aa7.53□□□□□ -1.2
LTN1-202ENST00000389194 HNRNPUL2Q1KMD3 747 aaKnown RBP7.52□□□□□ -1.21
LTN1-202ENST00000389194 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.52□□□□□ -1.21
LTN1-202ENST00000389194 ZEB1P37275 1124 aaPredicted RBP7.51□□□□□ -1.21
LTN1-202ENST00000389194 TRIM26Q12899 539 aaPredicted RBP7.51□□□□□ -1.21
LTN1-202ENST00000389194 ERICH6Q7L0X2 663 aa7.5□□□□□ -1.21
LTN1-202ENST00000389194 POLR3GLQ9BT43 218 aa7.47□□□□□ -1.21
LTN1-202ENST00000389194 NEFLP07196 543 aa7.4□□□□□ -1.23
LTN1-202ENST00000389194 MYT1Q01538 1121 aa7.38□□□□□ -1.23
LTN1-202ENST00000389194 BCANQ96GW7 911 aa7.35□□□□□ -1.23
LTN1-202ENST00000389194 DIEXFQ68CQ4 756 aaKnown RBP7.34□□□□□ -1.23
LTN1-202ENST00000389194 PABPN1Q86U42 306 aaKnown RBP eCLIP7.32□□□□□ -1.24
LTN1-202ENST00000389194 GTF3C3Q9Y5Q9 886 aa7.3□□□□□ -1.24
LTN1-202ENST00000389194 NEUROD1Q13562 356 aa7.29□□□□□ -1.24
LTN1-202ENST00000389194 MYT1LQ9UL68 1186 aa7.29□□□□□ -1.24
LTN1-202ENST00000389194 FAM50AQ14320 339 aaKnown RBP7.26□□□□□ -1.25
LTN1-202ENST00000389194 ARID3CA6NKF2 412 aa7.24□□□□□ -1.25
LTN1-202ENST00000389194 SLC4A1APQ9BWU0 796 aaKnown RBP7.22□□□□□ -1.25
LTN1-202ENST00000389194 ABCC9O60706 1549 aa7.21□□□□□ -1.26
LTN1-202ENST00000389194 P3H3Q8IVL6 736 aa7.2□□□□□ -1.26
LTN1-202ENST00000389194 ZNF326Q5BKZ1 582 aaKnown RBP7.2□□□□□ -1.26
LTN1-202ENST00000389194 TRIM52Q96A61 297 aa7.18□□□□□ -1.26
LTN1-202ENST00000389194 BCL11AQ9H165 835 aa7.17□□□□□ -1.26
LTN1-202ENST00000389194 DAXXQ9UER7 740 aaPredicted RBP7.14□□□□□ -1.27
LTN1-202ENST00000389194 ZNF316A6NFI3 1004 aaPredicted RBP7.1□□□□□ -1.27
LTN1-202ENST00000389194 CLSPNQ9HAW4 1339 aa7.1□□□□□ -1.27
LTN1-202ENST00000389194 FBLN2P98095 1184 aa7.1□□□□□ -1.27
LTN1-202ENST00000389194 ACIN1Q9UKV3 1341 aaKnown RBP7.1□□□□□ -1.27
LTN1-202ENST00000389194 SENP3-EIF4A1A0A087X0R7 540 aa7.09□□□□□ -1.27
LTN1-202ENST00000389194 HIRIP3Q9BW71 556 aaPredicted RBP7.09□□□□□ -1.27
LTN1-202ENST00000389194 MYO15BQ96JP2 1530 aa7.06□□□□□ -1.28
LTN1-202ENST00000389194 SALL2Q9Y467 1007 aaPredicted RBP7.05□□□□□ -1.28
LTN1-202ENST00000389194 SCAF1Q9H7N4 1312 aaKnown RBP7.05□□□□□ -1.28
LTN1-202ENST00000389194 ANP32CO43423 234 aa7.04□□□□□ -1.28
LTN1-202ENST00000389194 DDX10Q13206 875 aaKnown RBP7.03□□□□□ -1.28
LTN1-202ENST00000389194 RTL5Q5HYW3 569 aaPredicted RBP7.03□□□□□ -1.28
LTN1-202ENST00000389194 IRX6P78412 446 aaPredicted RBP7.02□□□□□ -1.28
LTN1-202ENST00000389194 NPM2Q86SE8 214 aaKnown RBP7.02□□□□□ -1.28
LTN1-202ENST00000389194 FKBP8Q14318 412 aa7.02□□□□□ -1.29
LTN1-202ENST00000389194 ZNF777Q9ULD5 760 aaPredicted RBP7.02□□□□□ -1.29
LTN1-202ENST00000389194 CSRNP3Q8WYN3 585 aa7.02□□□□□ -1.29
LTN1-202ENST00000389194 SENP3Q9H4L4 574 aaPredicted RBP7.02□□□□□ -1.29
LTN1-202ENST00000389194 MIER1Q8N108 512 aa6.99□□□□□ -1.29
LTN1-202ENST00000389194 CHIC2Q9UKJ5 165 aa6.98□□□□□ -1.29
LTN1-202ENST00000389194 CDK11AQ9UQ88 783 aaPredicted RBP6.98□□□□□ -1.29
LTN1-202ENST00000389194 FAM9BQ8IZU0 186 aa6.98□□□□□ -1.29
LTN1-202ENST00000389194 SCRIBQ14160 1630 aa6.98□□□□□ -1.29
LTN1-202ENST00000389194 SLC24A1O60721 1099 aa6.98□□□□□ -1.29
LTN1-202ENST00000389194 HNRNPUQ00839 825 aaKnown RBP eCLIP6.96□□□□□ -1.3
LTN1-202ENST00000389194 PLPPR3Q6T4P5 718 aa6.95□□□□□ -1.3
LTN1-202ENST00000389194 NBR1Q14596 966 aa6.93□□□□□ -1.3
LTN1-202ENST00000389194 ARXQ96QS3 562 aa6.92□□□□□ -1.3
LTN1-202ENST00000389194 CANXP27824 592 aaKnown RBP6.91□□□□□ -1.3
LTN1-202ENST00000389194 KDM2AQ9Y2K7 1162 aa6.9□□□□□ -1.31
LTN1-202ENST00000389194 GRWD1Q9BQ67 446 aaKnown RBP eCLIP6.88□□□□□ -1.311e-7■■■■□ 24.4
LTN1-202ENST00000389194 CHGAP10645 457 aaKnown RBP6.88□□□□□ -1.31
LTN1-202ENST00000389194 DCAF1Q9Y4B6 1507 aa6.86□□□□□ -1.31
LTN1-202ENST00000389194 TONSLQ96HA7 1378 aa6.86□□□□□ -1.31
LTN1-202ENST00000389194 EIF5BO60841 1220 aaKnown RBP6.86□□□□□ -1.31
LTN1-202ENST00000389194 PLEKHG5O94827 1062 aa6.86□□□□□ -1.31
LTN1-202ENST00000389194 RRP7BPQ9NSQ0 103 aa6.85□□□□□ -1.31
LTN1-202ENST00000389194 ANP32AP39687 249 aaKnown RBP6.84□□□□□ -1.31
LTN1-202ENST00000389194 MRS2Q9HD23 443 aa6.82□□□□□ -1.32
LTN1-202ENST00000389194 SIN3AQ96ST3 1273 aa6.82□□□□□ -1.32
LTN1-202ENST00000389194 ZCCHC6Q5VYS8 1495 aaKnown RBP6.81□□□□□ -1.32
LTN1-202ENST00000389194 CCDC136Q96JN2 1154 aa6.81□□□□□ -1.32
LTN1-202ENST00000389194 TMC1Q8TDI8 760 aa6.8□□□□□ -1.32
LTN1-202ENST00000389194 ZBTB47Q9UFB7 747 aaPredicted RBP6.8□□□□□ -1.32
LTN1-202ENST00000389194 RGL3Q3MIN7 710 aa6.79□□□□□ -1.32
LTN1-202ENST00000389194 SUPT16HQ9Y5B9 1047 aaKnown RBP6.79□□□□□ -1.32
LTN1-202ENST00000389194 CLIP1P30622 1438 aa6.77□□□□□ -1.33
LTN1-202ENST00000389194 CEP162Q5TB80 1403 aa6.76□□□□□ -1.33
LTN1-202ENST00000389194 RTN4Q9NQC3 1192 aaKnown RBP6.75□□□□□ -1.33
LTN1-202ENST00000389194 KCNH8Q96L42 1107 aa6.75□□□□□ -1.33
LTN1-202ENST00000389194 HSP90AA1P07900 732 aaKnown RBP6.74□□□□□ -1.33
LTN1-202ENST00000389194 RSF1Q96T23 1441 aaPredicted RBP6.74□□□□□ -1.33
LTN1-202ENST00000389194 MTUS2Q5JR59 1369 aa6.74□□□□□ -1.33
LTN1-202ENST00000389194 STAG3Q9UJ98 1225 aa6.73□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms